scg2b (scg2)


Basic Information

Item Value
gene id scg2b
gene name scg2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 11254430 ~ 11257433 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925127.2
CGGGCATTACGTGTGTGGCTGTGACGCACGCGGTCAGGTGTTGCCTCATATAGCGCGCGAGGGAGCTGTCCCGGTGCTGAAACCGGAGCCTACAGGCACGCGCTGAAGACACGCACACGGGGGAGATGCTCTTTTCgcttccatccattttctgagCTCCTACCTCGCGAAAAGGCGGCATGACGCGTTCATTAAGCAAGCTCTCGGGGCTTGTGCTGGTGGCTCTGCTGCACTGTGTGGCTGTGCATGGCGCCTCCATCACCCGTCACCACCGGCTGCGAGGCAGCAGCGGCAACCAAGACGCGTATCTGAGCCCCAACTCGGACATGATCAAAGCCTTGGAGTACATCGAGAGCCTGAAACGGCGCACCGACGACTCCGAGGGTCCCACCGGAGACTATGATGAAGTGGATAAATTCCGGCTCCTGGTGCAGCTCGCTTCTCTTCGGGACGAGGACGCGCCGGTGCGCGAGGACGCTGCCGCTGCCAGCTGGCCTGATAACAAAGCCCCGGAGTGGGTCCGAGCTCTGCTCAGGGTGCTGGAGCAAAGCGCAGACGGCGCGCTGACGCCCGGAAACGAGCGCCGCTTTCACAAGAGCAGACGGCCGGCGACTGAAGCCGAAAGTCCCGCGCCCGAGAACGGCGCCGTGGTGAGGCCTCACAAGAAATACCCACTCATGTTCGAAGACGAGGAAAACGTCCGGGACAAGAAGCGCGCCACGGAGGACCTGGACGAGCAGTACACCCCGCAGAGTCTCGCCAACATGCGCTCCATATTCGAGGAGCTCGGGAAGCTGTCCAACCCGCACAACCTGAAGCGGGACGACGCAGAGGCGGAGGACGAGGAAGAgggtgaggatgatgaagatgacgaGGACGTGTACAGGCCCCGAAACGTGGCGTATGAAGACGTGACCGGAGGGGAGGAGTGGGTGCCGTTAGAGGAGCAGGTCGAGACCGAGGAGATGGTTAAGGGCAGTCATGAAGAGTTTGATCGGGGAGTAGAGGACAGCGACGAGGCGCGCGAGGTGATGGAGAGACGATCTGCGCTTGACGCCACAGATCGCGCAGATGACGACACAAAACTTGTGGACTACGTCTTGCTGAAGGTGCTGGAAATGAGCGATCAGGCGCAGAAGCGCGACCTGACAGACGCGCAGAGCGGCAGGAGGAGACTGCTGAACATGCCCTCTCTGCTCGACCCGCGGGCCATCAAACAGCTGCTGTCAGCCGTGTCCATGAAGCTCCAGATCCCGCCTGAAGATCTGGTCGGCATGCTGTTTATGGAGGAAACTCGGAAGCAGCAGCGTCTCCCTGAACCTCAGCTGGCGAGAAAAGCCAGCGCGCCCCGCTACCGGAGCCGCGTCATCAAGTACTACAACGGACGCCAACCGGAAGTCACAGTCAGCGACATTCCCGCTGACGTCAAGACTGAAGATATCCTAAAGGTCCTGGGGCTGGGAAACATGGCCAACAAGAACGCCAAGTATTTCGTCAAACCGAGACCGTATAAGACGGCCATGGCACGGTATCTGGCGCCGAGCGGGCGGCGCGGCGGCGTGTCGGTGCCGGAGCTCAGCAGAGCGCCCAGCAAGCGGAAGGATGATTACGACGACGCGGTGGATGAAGACGAAGTGGCCACCTTCCTGGCCGCCAAACTTTTAACCGAGTACCCCGATCCCAGCTCATCAGATCGCAGAAGAGCCGTGGACTCCTCGAACGCACTGTTTCCCTACGAAATTTACGAGGAAGCCATGAAAGATTACTTCGACCAGGTAGACTCGGGGAAGGGCGCGCCTGCGAAAAGAGACACGCagggcaaggaggaggcggaAGTGCAGCAGAAAACCCCGACCGAGGTCGCGATCCCGGAGCAGGCTGACCAGCAGATCCCCGAGTCAGTAACCgagggagagaaagagcatCATACTAAACTGGTGGCTGGAATGTAGTGGCTGAGAATAAACCACAAGGGAACAGCATTCCTCTGTCCACATCCCTCTCCTTACAGATGCCTCGATTTCCTCAAGATTAACCAACGTTAAGTGCTTTAGGATGAAATTCTATATTATGTACATAATATACCGCATACAAACGTGCAAGAGTAAACGacattttgtgtcttttttttttccttttttgggttttttttgtttgggtttttagTGTCTCCAGTGTATTTTTGCCACGTGCGTTAGTATGATGTGCCCTTGCTTCTGTTGAGCACTATGGAGCTTGGTATGGTCCTATCCTATGAGCTGTATCATTATTAGACAAAGGTGGATGTGAACCTCGTTTCTCAGTCATTTTGTACCTGTTCTGAAGTGTGAAATGACTCAAAGATTAATAAAgcattactgtattatttttcc
>XM_026925128.2
TGTAGtggtttaaaaacatgttatgaTGCGATACAGCTCAGTTGTGCTCAGGGCTCCGAGTGGCTGATCTTGTGGGGGATATAAATCATTTACACAGCACTTTAACTCTCATTCTGAGCAGAGCCATAGGAGCCTGAAGCGGCATGACGCGTTCATTAAGCAAGCTCTCGGGGCTTGTGCTGGTGGCTCTGCTGCACTGTGTGGCTGTGCATGGCGCCTCCATCACCCGTCACCACCGGCTGCGAGGCAGCAGCGGCAACCAAGACGCGTATCTGAGCCCCAACTCGGACATGATCAAAGCCTTGGAGTACATCGAGAGCCTGAAACGGCGCACCGACGACTCCGAGGGTCCCACCGGAGACTATGATGAAGTGGATAAATTCCGGCTCCTGGTGCAGCTCGCTTCTCTTCGGGACGAGGACGCGCCGGTGCGCGAGGACGCTGCCGCTGCCAGCTGGCCTGATAACAAAGCCCCGGAGTGGGTCCGAGCTCTGCTCAGGGTGCTGGAGCAAAGCGCAGACGGCGCGCTGACGCCCGGAAACGAGCGCCGCTTTCACAAGAGCAGACGGCCGGCGACTGAAGCCGAAAGTCCCGCGCCCGAGAACGGCGCCGTGGTGAGGCCTCACAAGAAATACCCACTCATGTTCGAAGACGAGGAAAACGTCCGGGACAAGAAGCGCGCCACGGAGGACCTGGACGAGCAGTACACCCCGCAGAGTCTCGCCAACATGCGCTCCATATTCGAGGAGCTCGGGAAGCTGTCCAACCCGCACAACCTGAAGCGGGACGACGCAGAGGCGGAGGACGAGGAAGAgggtgaggatgatgaagatgacgaGGACGTGTACAGGCCCCGAAACGTGGCGTATGAAGACGTGACCGGAGGGGAGGAGTGGGTGCCGTTAGAGGAGCAGGTCGAGACCGAGGAGATGGTTAAGGGCAGTCATGAAGAGTTTGATCGGGGAGTAGAGGACAGCGACGAGGCGCGCGAGGTGATGGAGAGACGATCTGCGCTTGACGCCACAGATCGCGCAGATGACGACACAAAACTTGTGGACTACGTCTTGCTGAAGGTGCTGGAAATGAGCGATCAGGCGCAGAAGCGCGACCTGACAGACGCGCAGAGCGGCAGGAGGAGACTGCTGAACATGCCCTCTCTGCTCGACCCGCGGGCCATCAAACAGCTGCTGTCAGCCGTGTCCATGAAGCTCCAGATCCCGCCTGAAGATCTGGTCGGCATGCTGTTTATGGAGGAAACTCGGAAGCAGCAGCGTCTCCCTGAACCTCAGCTGGCGAGAAAAGCCAGCGCGCCCCGCTACCGGAGCCGCGTCATCAAGTACTACAACGGACGCCAACCGGAAGTCACAGTCAGCGACATTCCCGCTGACGTCAAGACTGAAGATATCCTAAAGGTCCTGGGGCTGGGAAACATGGCCAACAAGAACGCCAAGTATTTCGTCAAACCGAGACCGTATAAGACGGCCATGGCACGGTATCTGGCGCCGAGCGGGCGGCGCGGCGGCGTGTCGGTGCCGGAGCTCAGCAGAGCGCCCAGCAAGCGGAAGGATGATTACGACGACGCGGTGGATGAAGACGAAGTGGCCACCTTCCTGGCCGCCAAACTTTTAACCGAGTACCCCGATCCCAGCTCATCAGATCGCAGAAGAGCCGTGGACTCCTCGAACGCACTGTTTCCCTACGAAATTTACGAGGAAGCCATGAAAGATTACTTCGACCAGGTAGACTCGGGGAAGGGCGCGCCTGCGAAAAGAGACACGCagggcaaggaggaggcggaAGTGCAGCAGAAAACCCCGACCGAGGTCGCGATCCCGGAGCAGGCTGACCAGCAGATCCCCGAGTCAGTAACCgagggagagaaagagcatCATACTAAACTGGTGGCTGGAATGTAGTGGCTGAGAATAAACCACAAGGGAACAGCATTCCTCTGTCCACATCCCTCTCCTTACAGATGCCTCGATTTCCTCAAGATTAACCAACGTTAAGTGCTTTAGGATGAAATTCTATATTATGTACATAATATACCGCATACAAACGTGCAAGAGTAAACGacattttgtgtcttttttttttccttttttgggttttttttgtttgggtttttagTGTCTCCAGTGTATTTTTGCCACGTGCGTTAGTATGATGTGCCCTTGCTTCTGTTGAGCACTATGGAGCTTGGTATGGTCCTATCCTATGAGCTGTATCATTATTAGACAAAGGTGGATGTGAACCTCGTTTCTCAGTCATTTTGTACCTGTTCTGAAGTGTGAAATGACTCAAAGATTAATAAAgcattactgtattatttttcc

Function

symbol description
scg2 Enables chemoattractant activity and cytokine activity. Involved in several processes, including eosinophil chemotaxis; induction of positive chemotaxis; and negative regulation of apoptotic process. Located in extracellular space.

NR:

description
PREDICTED: secretogranin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925127.2 True 2372 mRNA 0.56 2 11254430 11257433
XM_026925128.2 False 2336 mRNA 0.55 2 11254430 11256894

Neighbor

gene id symbol gene type direction distance location
LOC113533464 NA coding downstream 24039 11225802 ~ 11230391 (-)
mbnl1 LOC108280526,LOC108428303 coding downstream 84038 11108408 ~ 11170392 (-)
kcnab1b kcnab1b,LOC108280191,LOC108428302,LOC107600068,LOC107749128,LOC107721779,LOC107557878,LOC107692887 coding downstream 162843 11035914 ~ 11091587 (-)
pask pask coding downstream 224940 11010346 ~ 11029490 (-)
mterf4 LOC108428300 coding downstream 244189 11001980 ~ 11010241 (-)
gbp2 LOC108280462,LOC108280460 coding upstream 29743 11287176 ~ 11325246 (-)
hes6 hes6 coding upstream 209687 11467120 ~ 11468787 (-)
LOC113533529 gpr55 coding upstream 235161 11492594 ~ 11496391 (-)
trnaw-cca_17 NA coding upstream 290935 11548368 ~ 11548439 (-)
acsl3b acsl3b,LOC108280780,LOC108439858,LOC107738798,LOC107745612,LOC107567703,LOC107660143,LOC107552494,LOC105907082 coding upstream 292350 11549783 ~ 11572390 (-)
G318479 NA non-coding downstream 67030 11187197 ~ 11187400 (-)
G318293 NA non-coding downstream 245260 11007152 ~ 11009170 (-)
G318202 NA non-coding downstream 332868 10845723 ~ 10921562 (-)
G318198 NA non-coding downstream 411139 10841668 ~ 10843291 (-)
G318128 NA non-coding downstream 530215 10723148 ~ 10724215 (-)
LOC113533221 NA non-coding upstream 137448 11394881 ~ 11411164 (-)
G318552 NA non-coding upstream 143232 11400665 ~ 11401502 (-)
LOC117599995 NA non-coding upstream 372137 11629570 ~ 11631921 (-)
G318639 NA non-coding upstream 432056 11689489 ~ 11693334 (-)
G318660 NA non-coding upstream 544214 11801647 ~ 11801862 (-)
ccl20a.3 LOC108261059 other downstream 726151 10527282 ~ 10528279 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other downstream 2281155 8969204 ~ 8973275 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other downstream 2300320 8903824 ~ 8954110 (-)
G317176 NA other downstream 2368721 8883649 ~ 8885709 (-)
vcpip1 vcpip1 other downstream 2765801 8477223 ~ 8488629 (-)
wu:fb63a08 LOC108280878 other upstream 362443 11619876 ~ 11705877 (-)
LOC113533649 LOC108280860,LOC108433106 other upstream 1651020 12908453 ~ 12928071 (-)
ccl25a NA other upstream 2355083 13612516 ~ 13615743 (-)
LOC113533556 LOC108280202 other upstream 2407748 13665181 ~ 13680110 (-)
theg NA other upstream 3474301 14731734 ~ 14745487 (-)

Expression


Co-expression Network