im:7138239 (LOC108280258,LOC108439873)


Basic Information

Item Value
gene id im:7138239
gene name LOC108280258,LOC108439873
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13594607 ~ 13599684 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925153.2
GGGCCAGTCAGGCAAGACTGAGTACGTGTTTaggttgagtgtgtgtgacactgagGAATACTGCTATGGATATGGTGCTGCTGCACGTGTTCCTGCTTCTCTCTTTGTGTCATCAGAGCTTGACAGCTGTATTGAACATGCACACAGATCCAAGAAATCTGTTTGCAGAGAGAGCTTGTTGCAGACGCCAGAGTCACTTCATCTACATAGGACAAGATATCTTAGGCAGTCCAGTGAACGTGGATGTAGGCATGTGCCGAACAAACTGCGGCCAAGCACGGCCCTCATCCTTTGAGGCTGGGATGCAAGGCTACGCCTCCATGCTGGACTTCCTGAGAGACAAAAAGATGCGAACTCCAGCAGCGTCCTCTCACGAGCTCTCGGGCTTTGGAGGAAACCTTCCGTCATGTGGCATGAGCATGACCTGTGAACCCACTGGACTGCGTGTGGACAAAGTGATGCTCATGGACGGCCTGCGTGAGGTGGAAATCATTGAGGACTGCCACTGCGAGGCCAAAGTGACTCGCTGTGTCCGAGCACCCTCTCTCAGAACATACTTCTTTGAAACACCTTACGAGACTGTTATCGATGTGGGCAAGTGCGTAGGATCGAAAGGTGAACTGGAGGGCTTTTCCTGTGTGCCTACCAAGTTTGATTCTGCTCTCGTGGACACTCCGAATAAAGTGGAGCTGATTCAGACGGTGGCTGGCTGCGATATGAAAGAAGGCTGCTACAGAATTCCTTATGTGGAATATCATTACGAGATCACATACAATGAAGACGGGCTCAAGGAAGAAAAACTTAAGGAAATAGATGTGGGGAGATGTTTGGGAAGCTGCACCTCAGGAAACCGCTGTCTTCTCAGGAGTGCTTCTAATTCTGCTGAGTGTCTGCTGTGGGCAGAGGGACAGGGCAGTGCGTGTGTTCCACAAGGGTATGAGAGCCACACGTTTCTCAATCAGCATGGACAAACCCGAACTGTGCTGGCCATCACTTCGTGCCTCTGCCAGTCTTAAACACAGTGACCTCTACTGAAAGTGCACACACGCTGCACTAACCAAGTGGACTTGCATTTACAAAAGTGTCTTGAGTTGACTAAATGCAGAAGCACGTTAAAGGCTGGGATCTATAACATATAATTATTATGTTAAAATAGCACATGCTATTATGGTATTctgacatactatttagtattatagtataataataacctttatttaaccaggtaagtcaagtgagaaccagttctcatttacaaCGACGACCTGGCCAGTATGTGGTTTAGGACATGGGTTTTGGAATCTGTGTTTTTATAATGTTACAACATATGTGTCAAGGACATCTACTTCTCTTATGCAAAATTACAGCTGACCTGTTTCAGCTGTCCctgtaatatatgtaaaatatgtaaatataattttgtaaataaatttgatgCCATTAATTAAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC104950317

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925153.2 True 1449 mRNA 0.46 7 13594607 13599684

Neighbor

gene id symbol gene type direction distance location
admp LOC108280256,LOC108439880,LOC107754609,LOC107687929,LOC107596296,LOC107696672,LOC105906921,LOC107750936 coding downstream 1941 13589569 ~ 13592666 (-)
LOC113533394 LOC108280525 coding downstream 205770 13386391 ~ 13388837 (-)
LOC113533154 pde4dip coding downstream 217429 13306777 ~ 13377178 (-)
cactin cactin,LOC103479278,LOC103479458 coding downstream 299629 13285372 ~ 13294978 (-)
LOC113533516 NA coding downstream 429390 13161536 ~ 13165217 (-)
capsla LOC108280735,LOC108439882,LOC107552688 coding upstream 59010 13658694 ~ 13661180 (-)
abhd8a abhd8a,LOC108280232,LOC108439870,LOC107696148,LOC107754588,LOC107687901,LOC107596234,LOC103352801 coding upstream 93719 13693403 ~ 13703418 (-)
LOC113533381 LOC108280169,LOC108439884,LOC100333521,LOC107696163 coding upstream 105616 13705300 ~ 13710697 (-)
napgb napg,LOC107750913,LOC107696142,LOC105907026,LOC107687900 coding upstream 208091 13807775 ~ 13819461 (-)
acss2l LOC108280639,LOC108442433,LOC107750908 coding upstream 310181 13909865 ~ 13931138 (-)
G319754 NA non-coding downstream 7076 13587091 ~ 13587531 (-)
G319674 NA non-coding downstream 165644 13428011 ~ 13428963 (-)
G319673 LOC108280701,LOC108433090,LOC105903982,LOC106600049,LOC107384124,LOC105020399 non-coding downstream 168655 13422351 ~ 13425952 (-)
G319606 NA non-coding downstream 285564 13305529 ~ 13309043 (-)
G319568 NA non-coding downstream 450336 13144063 ~ 13144271 (-)
G319766 NA non-coding upstream 29563 13629247 ~ 13629457 (-)
G319906 NA non-coding upstream 232171 13831855 ~ 13834798 (-)
G319974 NA non-coding upstream 340927 13940611 ~ 13945349 (-)
G319975 NA non-coding upstream 348624 13948308 ~ 13949723 (-)
G319995 rnf126,LOC107750906,LOC107569633,LOC107596227,LOC107754583 non-coding upstream 410225 14009909 ~ 14010528 (-)
LOC113533649 LOC108280860,LOC108433106 other downstream 666536 12908453 ~ 12928071 (-)
wu:fb63a08 LOC108280878 other downstream 1888730 11619876 ~ 11705877 (-)
ccl20a.3 LOC108261059 other downstream 3066328 10527282 ~ 10528279 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other downstream 4621332 8969204 ~ 8973275 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other downstream 4640497 8903824 ~ 8954110 (-)
ccl25a NA other upstream 12832 13612516 ~ 13615743 (-)
LOC113533556 LOC108280202 other upstream 65497 13665181 ~ 13680110 (-)
theg NA other upstream 1132050 14731734 ~ 14745487 (-)
LOC113533479 LOC108280451 other upstream 1623094 15222778 ~ 15231580 (-)
LOC113533563 NA other upstream 2087398 15687082 ~ 15724356 (-)

Expression


Co-expression Network