LOC113533206 (loxl5b,LOC108280695,LOC108427108)


Basic Information

Item Value
gene id LOC113533206
gene name loxl5b,LOC108280695,LOC108427108
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16128701 ~ 16131801 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925155.2
GGCACCGGGCGCAAGACGTTACGCCAACGCCGCCGCGTCAAAAACACAAATCCAGCGCAACCATCAGGCTACTCGGGTAGCGGCGTCCCGAGAAGATCAACCTCGACCACGGAGGATGATAACAGCGCGAACCGAGTTCAAGAGCTGCATCCGGAGAGCGCAGCGCCCGCGAACTTGGAAAGCGCGCGCGTGGAGAGCGTGAGCGCGCAGCAATCCTATCCTGATCCTACGATCACTGGGCAGGAGAGCGTGGGTGATGCCGTCGCTCCAGCGCCTGGTTCTCTCGGAACAAGCGAGGAAGAAGAGACACCCGACAACATGATCGGCGACGACCCTTGGAACCCACAGAAAAACCACAGGAATACCGTTTTCTACAACGCGTATCCATCAGGCGGACGGGCTGGTACCGCGCGCACGCGCCGTCCTCCACCTGGAACTGGGTACGGCACGAGATATTTCCACAACGgGCTCCCGGACCTCGTGCCAGATCCGTACTCCATTCAGGCTGGCTCCTACATCCAGCGCATGCAGATGTATGCGCTCCGGTGCGCAGCTGAAGAGAACTGTCTCGCGCGGTCAGCTTATAGACCAGCAGTCAGGGACCTCGACTACAGGGTTCTGCTGCGCTTCCCCCAGAAGGTCCGAAACCTCGGCACAGCAGACTTCCTGCCCGTAAAACCCAGACACCAATGGGAATGGCACAGCTGTCATCAGCATTACCACAGCATGGATGCGTTCAGTCTCTATGATCTATTGGACGTAAACACTGGCCGTAAGGTGGCAGAGGGACACAAAGCCAGTTTCTGTCTGGAGGACACTGGCTGTAACCCAGGCTTCCATCGTCGCTACGcttgcactgcacacacacagGGTTTGAGCCCCGGCTGCCATGACACCTATGCTGCTAACATTGATTGCCAGTGGATCGACATCACAGATGTTCCTCCTGGTAACTACATCCTTAAGATCACAGTTAACCCAAATTACCTGGTTCCTGAGTCTGATTTCTCCAACAATGTGGTGCGCTGTGAGGTTTCCTACAGCGGTCATCACGTCCAGACTCAAAATTGCAGGATAAGCAGgaaCTAAAATCTTGGACATGTTAGGAAATCTTTTCCTccatatttttctgtattttgtaaGCTGGCAGTTTATATGTAATTCCTTTCATAAGAGTATTCAACAAAAACTTGAAATAATGTTGGAATAACGTGTTATAATagttgtactgtatatgtattatttgcgttaatatttctgttttatttttagtgcaataaaatattgtttGCAGTATTAGAGTAcaagaaattacatttttataatgcatttaatttatagCTTGTTGTTACAGATATGtgctttgtgttattttatgtgTATAGACAGTTGCTTTTAAAttctttgtatttattacatatgAAAATGTAAGGGTATGgtattcttaattttttttttcttttaagacctgagtatttttttttctacttgtgTTTAATTTTGGTGACTCCAGAGTAGACCACTAGAAACAGACGGTAACTACATGAAGTATTTCATTCATGCTGTGTAAGAATGCAAGTAggcatccaaaaaaaaaaacatgtagtcTGACTGTGTGTAATGTCCCAGTGCTTTCATTATTACAAGAGACATTCCATGGCTGAGGCTGTTTCCCTGATACAcaataaacatcacagaaaCTAATACTGAAATTGAGTTATGTTTCTTTTGGAATTCAGTTATAAACCCACCGAAGTCTGTTTTGTCTATTTGAATGAACTatcaggattaaaaaaacaggcatATTGGACATGCGTtctttgtaaaaacaaacactgttgCTGATTAAAATGAAGTCTGACCAAGGATTTAATTGGTTCAGACAGTAGACCTTGCAGTATTTGGGAAATTTCTGCATAAACGAGGCAGTGTGTCTGGGACAAAGTCTTGCCAGCTAGGTTCATTTTGTCTGGATAAATGGGGTGTATTTCCCTTGATTTTAAtcacttaaatatttaaatcttatttaacATGAGCACAATAATGCAGTATATATTTGGATGTTAATGATTCCCTCTTGTCATTTCCAGTAAGTGATGGATGAAGAAATTGTTTTCTGTATTCACCATAGTTGAACTAATACACATTCCTCTGGTGGcattttgagtaaaaaaaaaaaagtcaa

Function

symbol description
loxl5b Predicted to enable protein-lysine 6-oxidase activity. Acts upstream of or within notochord morphogenesis. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in notochord and prechordal plate.

GO:

id name namespace
GO:0048570 notochord morphogenesis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005507 copper ion binding molecular_function
GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925155.2 True 2185 mRNA 0.44 7 16128701 16131801

Neighbor

gene id symbol gene type direction distance location
pgpep1 pgpep1,LOC107596298,LOC107552686,LOC107660389,LOC107696873 coding downstream 33847 16090524 ~ 16094854 (-)
upf1 upf1,LOC107660376,LOC107724030,LOC105907049,LOC107696277 coding downstream 40183 16071106 ~ 16088518 (-)
LOC113533416 homer3,LOC108280570,LOC108427175,LOC107696283 coding downstream 60140 16041828 ~ 16068561 (-)
polr2ea polr2e,polr2eb,LOC107669821,LOC107599482 coding downstream 199634 15924221 ~ 15929067 (-)
zgc:85843 tm6sf2 coding downstream 267219 15854503 ~ 15861482 (-)
nmrk2 LOC108280697,LOC108427183,LOC107750947,LOC103029326,LOC107552712,LOC107696854,LOC107687917,LOC107723974 coding upstream 8963 16140764 ~ 16143363 (-)
atcayb atcay,LOC108280696,LOC108427182,LOC105906996,LOC105906923 coding upstream 16062 16147863 ~ 16160217 (-)
klf2b LOC108280879 coding upstream 95870 16227671 ~ 16230299 (-)
ap1m1 ap1m1,LOC107696211 coding upstream 176757 16308558 ~ 16326957 (-)
LOC113533484 LOC108280930,LOC108427189 coding upstream 204202 16336003 ~ 16342837 (-)
G321349 NA non-coding downstream 29463 16098868 ~ 16099238 (-)
G321347 NA non-coding downstream 79058 16049442 ~ 16049643 (-)
G321330 NA non-coding downstream 86960 16040881 ~ 16041741 (-)
LOC117595737 NA non-coding downstream 301357 15811353 ~ 15827344 (-)
G321032 NA non-coding downstream 536085 15592160 ~ 15592616 (-)
G321354 calr3b,LOC107750920,LOC107696693,LOC108280796,LOC107552714 non-coding upstream 56175 16187976 ~ 16223314 (-)
G321465 NA non-coding upstream 242709 16374510 ~ 16375343 (-)
G321468 NA non-coding upstream 262407 16394208 ~ 16456123 (-)
LOC117595731 NA non-coding upstream 262952 16394753 ~ 16395539 (-)
G321470 NA non-coding upstream 267499 16399300 ~ 16401527 (-)
LOC113533563 NA other downstream 404345 15687082 ~ 15724356 (-)
LOC113533479 LOC108280451 other downstream 897121 15222778 ~ 15231580 (-)
theg NA other downstream 1383214 14731734 ~ 14745487 (-)
LOC113533556 LOC108280202 other downstream 2448591 13665181 ~ 13680110 (-)
ccl25a NA other downstream 2512958 13612516 ~ 13615743 (-)
G321462 NA other upstream 225773 16357574 ~ 16367004 (-)
stk11 stk11 other upstream 432907 16564708 ~ 16587816 (-)
trnal-uaa_3 NA other upstream 841726 16973527 ~ 16973770 (-)
G322080 NA other upstream 1368264 17500065 ~ 17500832 (-)
LOC113546399 LOC108280496,LOC108430154 other upstream 1722046 17853847 ~ 17872108 (-)

Expression


Co-expression Network