LOC113533212 (LOC108280212,LOC108427118,LOC568754,LOC107558277,LOC107667866,LOC107729992,LOC107600185,LOC107750900,LOC107696035)


Basic Information

Item Value
gene id LOC113533212
gene name LOC108280212,LOC108427118,LOC568754,LOC107558277,LOC107667866,LOC107729992,LOC107600185,LOC107750900,LOC107696035
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 14481676 ~ 14487383 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925176.2
TTAACACGCTGAGTAAAGTCAAGTAAACCCGCGCACCTCGCATGGACAAAAGGACACGCACGCAGACACCTGTGATTTGCCAGACCTGATAGCAGACGCCGCAGTGGTTCGCAGTAAGTTCCCCGAAGCTGCTCAACAGGGTTTGTTTCCTCCTACCACTCCTTCTCAAGAGAGTATGTGGCTCCTGGAGAAGATCCGTGGCTCTGTGGAAGGCAATGTGCTCCGTCATCGCGACTCGGGTGACAGCCAGTCCAAAGGGCCCACCCACAGCAATGTGCTCACACCCGATAAGATCCCCGACTTCTTCATCCCACCCAAGTTGGTGTGCTGCCCCCCGGAGGCTGATACTCCAGAGATGAAGCCCAAAAACGGGCTGCACTCCTCCACATCCGAGCAGACCATCTGCAGCAAGACACCTCAGGGTGGCTCACGCAGCCCGCGCCTCATTTGCAAGCTCACTGGGGATACCAAGAACCTGCTCAAGGCTGCCAACCGCCACATCATCCAGATCGAGAGTGCTGATGACTTGGCAGCAGGTGACGTTGGTGACCTCACCACCAACGCTGACCCTCAGTCCCAAACAGCCATGTCCTTGCCCTATGTACCTAAAGCGCAGACCTCGTATGGCTTTACTACTTTGATGGAGAGCCCTCACACACGACGCAAGGAGTCGCTATTCCACAGTGACCCCACCAGTCCGCTCACATCCCCCAATTCTCAGCGCAAGACACAAGGCAACAGCAACCACCTCAACCCAGGTGACTGCAATACCTCACACTCCAACCCTTATCGCTACTTCAGTGGAGGCGAGAGCGACACATGCTCCTCAGCAGAGTCATCACCATTTGGCTCACCCTTGCTCTCAAGGTCAGCCTCGCTTCTTAGAATGTTCACCCATGAGACCCAGGCTAAAGTATCACGTGCTAAGCGCTCCTTTGCCCGCCACAGCTCTCTCTCGACAGACGACTGCAGCTCGGTGGAAACCAGCCCCAACATCCAGCGCCGCTTCAGGTGTCCACCTTCGCCTGCATTCGGAAGCCGTAAAGCAGGCGCCAATGTCGACCGCCTCACCCAGCACACTGTCAAACTGCACAAAGGGGGGACACTGCGCCTCTGCACGGACTACGACACAGAGGCGGCGCGGCTCCGGGTGCGCGTGCTTGCTGCTGAAGACCTTTACGATAAGCAGGTTGATGTGAAGAGCATCAACTGCTGTGTGGCACTCTACCTGAACCCAGGCAAGCTGCAGAAGCAGAGAAGCAACATCATCAAAAACAGCCGCAATCCTGTCTTCAACGAGGACTTCTTCTTTGACTCCTTGCCTGCTGCACAGGTCAAGAACCTGGCGATAAAGATGAAGGTGGTCAACAAAGGCACCAGCCTGAAACGGGACACGTTGCTTGGGGAGAGGGAGGTGCCCCTTAAAGATCTGCTGCCTGGCTTTTAGTGCCAACCACAACAGACTCCACTGAACAGGAAGTACAGTCAGCCTGGACTGAATCCAGAGCAAACAAAGTGTCCACTGTAatgtttttccttccttcttcctgcTGCAAGAGGTGACCTTTCCAGTTAGAAGACTGAGAGTGTGTTATTGACAAGGGTTCTGTTTGTCCACATgttctgtgtgtatgttcagGGCGTGTCAGTATTTGAACTGTACATAAAGCTCGCTGTAAGTGTCCtttcaaaagtgtgtgtgtgtgtgtgtctggctcACTATGGCAACTCATGTCTGTAGAAGCCAGCTAACATCTGTACAGCTGGTGATGCAGCTGCTTTGCACTGTGCACATGTACAAAGAGGCTTTGAAGTGCCACAATGGCAAATGCAAATGCATGCTTCATATCTGGTTTGAAATTCTAAACTTGTGAGCGTGACAAAGACTTTTGTATTTGCTATCACTGTAGTGCCAGACTTTCCATGTAAGCCTTTTCTTCAATCTTATCACTGGAGCATGTGAGTGATCTTGTTGAATTGTTCTTGCTTATAGTCCTTTGGTTCTATGCTATAATTCTGCTTATTTTCACTGAGTAGTTTTGTGGGACAAATTCACCCTCCAGCCTTACAAAAGAGATAAGCTGCACATGTCGACTGGTACATCGCAAAACGGACATCTGTTAATTAGACTTATTGTACAACACCAATCAATTgtgaataatgtaaataattgcTTATCATGTTGTACGTGTGTATGACAGACCTTCAGCATACTTGAGTACTTGCACAATTGTCTTGGCATGTTTGTTGAAATTTATGTGTATAGCTGAGACAAACTTGCACAGATAAATGCATAAGCTTTTTCTTACCACTTGTTGAACACATTGGCTGTAACGGAACAGCTAATGGATAACAATTGTATAATGTAgtgccaatatttattttactgttttatggAGTTGAGATTTATACTTTTCCATGGCCATAACAAATGATTTCAGTATAGCCAATTATAATTCCTTATTATAAATCATCTTAATAGCATCAGTGTAATGGGCCAAAAATGGCCACGGGTCCTTGTAAGccttcttatttttcatttacagaGCCTTGAGAGCTCTGTAATCTAATTAGCATTTAGGAGTCTCTGCAGTATAGCACAAATGAAAGCTAAAGCCACTGTTGGCAGACATCAGACTTTGTCCAGTAGACAATAGCACTTCTaggctgttgttttttttttggctgtttactctttttttaaattgaatatcTCACAAATCACCTAATTTTAGCTTGCTAGTAATAACTCCTAAGGGTGAGAACTATTAGAGAGATGTCTTTGGTGCTAGAGGTGTTGGCTTgctagagtgagagagagagagagagagagagagagtcatccATTGACAGCCTATATTTTACACTCTATAGTATCTGCAGGAACCAGaccattttaaatccattttcttGGTTTTCTGCCGAAACAATTCTTACTTTGACGGCACCAATCATACATTTCTAGCTCTATTTTGAGCACTCATTTGCAACAGTCAAATTGCAGGTATTAGATTCCCTATTAGCTTTACTTCAATGGCAGGTACTGTGATTCTCTACATGAACAGCAGAAGTACAATTACACAAGGGGGAATGACTTCTGACTTCTTGAAATCTCTCAAATTAAAATGGCTGAAAGAAGGCCCTGCACTCTTTGGTGGAAATGAAAGGACTCAGTGACGGCATTCGATTGATATTCATTTCACTATCCGTGTTTCTGTAGATGAGATTAAACTGTCTGGCGCTTGTGTTTAGAACCGAATATAAAAGATAAAGTGCCTATCCACTGAACTTGATGcctgtccttctgtctgtcaAGACGTAGGCCTCTGTGTGCGACCTTCCTCTTCCCTTATTACTGTGTGCAGATGCATTATCAACACTACCTTTATTAAGTCCAAATAGACGTACTGTAATATTGTACCTCCGAGTTATATTGTGTGGGTGTTTCTATATTTTCTGATGCTGAAGGTGGATATTGTTGGTTTTGAGTGGATGCGTTCGTCATTGTGggcttttattgtttattacacCAAGCCGAGATTCTAGCAGTGACTTTATTCTTTGCCCGACTCTGTTTTCTGAAATTGTTTCACGTTTATTTCTCCTTTCCAATTTTCCATTGATCCTCCAAATCCAAAGTGAAACATGGTATTGACCTGTCTATTTTGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925176.2 True 3670 mRNA 0.46 2 14481676 14487383

Neighbor

gene id symbol gene type direction distance location
ralbp1 ralbp1,LOC107696059,LOC107667860 coding upstream 31237 14438363 ~ 14450439 (+)
sirt6 sirt6,LOC107667852 coding upstream 109483 14344594 ~ 14372193 (+)
rnf126 rnf126,LOC107569633,LOC107754583,LOC107596227,LOC107750906,LOC105909243 coding upstream 466305 14006357 ~ 14015371 (+)
twsg1a twsg1,tws1a,LOC106579643 coding upstream 477976 13988603 ~ 14003700 (+)
ankrd12 ankrd12,LOC108280287 coding upstream 496620 13949726 ~ 13985056 (+)
gna11b gna11b,LOC103033252,LOC108280682,LOC108427217,LOC105889474,LOC107600186,LOC107667855,LOC107696027,LOC107558284 coding downstream 62926 14550309 ~ 14594321 (+)
chico chico,aes,LOC108280588,LOC108427216,LOC107558286,LOC107667856,LOC106574496 coding downstream 115386 14602769 ~ 14628849 (+)
scn12aa scn12aa,LOC100304599,LOC108427209,LOC107655859,LOC107713684,LOC107558292 coding downstream 290839 14778222 ~ 14804806 (+)
LOC113533364 epb41l3,LOC108280699,LOC108427206 coding downstream 631110 15118493 ~ 15139852 (+)
LOC113533638 apcdd1,LOC108280926 coding downstream 688392 15175775 ~ 15191239 (+)
G320212 NA non-coding upstream 22667 14458672 ~ 14459009 (+)
G320211 NA non-coding upstream 25219 14455383 ~ 14456457 (+)
G320210 NA non-coding upstream 27725 14438716 ~ 14453951 (+)
LOC117595736 NA non-coding upstream 55378 14404979 ~ 14426298 (+)
G320149 NA non-coding upstream 166358 14315061 ~ 14315318 (+)
G320371 NA non-coding downstream 61840 14549223 ~ 14560613 (+)
G320386 NA non-coding downstream 126616 14613999 ~ 14671669 (+)
G320797 LOC108280451 non-coding downstream 736488 15223871 ~ 15226072 (+)
G320843 NA non-coding downstream 823221 15310604 ~ 15310809 (+)
G320848 NA non-coding downstream 853183 15340566 ~ 15341207 (+)
rab31 rab31 other upstream 14923 14386238 ~ 14466753 (+)
zmp:0000000521 zmp:0000000521,LOC108280721,LOC107696078,LOC108442439,LOC107596226,LOC105888700 other upstream 354664 14080249 ~ 14127012 (+)
LOC113533270 mtcl1 other upstream 583762 13837433 ~ 13897914 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other upstream 1327149 13021142 ~ 13154527 (+)
G319170 NA other upstream 1678657 12765055 ~ 12803019 (+)
tle2c zgc:136336,LOC108280589,LOC108427215 other downstream 150398 14637781 ~ 14666508 (+)
ly97.3 LOC108280687 other downstream 339859 14827242 ~ 14828778 (+)
LOC113533366 NA other downstream 576338 15063721 ~ 15066371 (+)
LOC113533365 LOC108280254 other downstream 594855 15082238 ~ 15101461 (+)
fcer1gl LOC100304589 other downstream 762132 15249515 ~ 15253555 (+)

Expression


Co-expression Network