LOC113533215 (LOC108280868)


Basic Information

Item Value
gene id LOC113533215
gene name LOC108280868
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13571709 ~ 13587075 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925179.2
AGAAAGCAAAGCTTTATGATTAAGAGGGAATCAGTGTGTAGAGAGAAAGTGTAAGTGAAGCTGAGCTCTGATCAAGCCGATTAGTGCTTGCAACATGGATGGAGATAAAGAAATTAACAGGAAATTTTCACTGGACAGTTTGGGCTATTCCCTGGATTGTGGAGGATCCCCGGGGAAGTCCAAAGAGTATAAAATGAGGAGGAGTTCTGAGAGCATGAAGAGTCGTGTCCTGGATGAATCACACTTTGAACTCCTTAACAAGAACCTccagagaagcagctccataCGAACCACCAGCACAATAGATGAGGAGGGGGCTGATCGTTCAGACGGACCTCTTAATCGCAGTAGTTTCAAGAACCATAGCAAAACATTCCACAAACATTTCCCAGAAATCTCTGAGATGGAGGATCTGATTTATGCTTTCACCTGTGCCCTCCAAAAGGAAGTGCTCTACCATGGCAAGATGTACGTGTCACACCAGCATGTGTGTTTCTACTCCTCTGTTCTCCTGAAAGAGACCAAGgTTCAGATACATATGTCCACAATCCAGAttataaagaagaagaacacaGCACGGGTTGTACCCAATGCAATCTCCATCATCACCAAAACTGGAGACAAAtatcTGTTTGGGTCGTTACGGAATCGAGACGTGTGTTTCAATGTCCTGAGGTCTATATGTCCACAGCTACAGAATGCAAGTCTTCAAATGTCTCCTGTAGAAAACGGCCATGAACTGGAAGTCGACGCAATTTCCAGTCACTCCAGTCAGGAGGACAGTACAGACCCTCACAGGTTCTCTGTCTCAGGGCAGGACAGGAAGACGAGCAGCAATGTTCCTCCCTTGTCATCAGTCTCTAACATTTCCCACGTCGAAGCAAGAAACAACTCCACATCATGCAACAGCACCAACAGAGATGGCCACTCTTCAGAGGAGAACACAGCTGTCTCCTGGGTGGCCATGGTAACGGAGAAGATCAGATCTTTCCTCTCCGTGGGAGGCACGACCAGCGTCAACAAACTCGTCACTGTCTATCTCATACTagttCTGCTCCTGGTCCTGTCATCTGGCTACATTGGTCTGCGTATTGCAGCTTTGGAAGAGCAGCTGAGCACACTTGGAGCAACGACTGAGTTTGGCCTACAGAGATCGTATAAGGAAACATAACACCTTGCCTGCATGAAGAGCCTGAAACATCCTGGAGGAGTCAAAACAAAGAACTTTCCATCTCTTAACATGCAGCACAACACAAGTCTTCACTGGCACAGTGAACTGACCGAGAATGAATCTGAAAACAGCAGACTTTATTTCCCTGGAGGTCTGCTCAGACTCTGGTTCCAGCCATGTCCCAAGTAGTGCACTGCATTTGGTGGTGGTGTAACCAAATAGAGAATTAACTCTTTAATGCATGGCATCCACCCTCAGGTACAGCTGAATTAAAAGTGGATtgaattggattttttttaggaaaGTATTAGAtacaaatatatgtaatatgccTCTACAGCACTTGGTGGCAAAGACATTAGATCATTACTATTCTGTAACACAAACCATtattctgatcagggttgccagaGTCATGTTTTTATGCCAAATTTGGCTACGTCTGAAGCAAAGTTGCAGTTGGAAAGCATGTCTGTAGGTAAAAttagatcttgttttaaagcaaataatctgaattaattCTAATCAATTTCAAACACAGGATATGATGAAAAAAGGGAAAGTGTTagtgcagacagtgtatctttcatttctgttttaatgtgGTTAATGTCCATACCAAATGATAAAAAGGTGTATTGTAGATATTGCAAGTCAGAAATGTGTGTACACCATTACACCCATACAAAGAGTAAGAAAAACAAGGATAATGCATTTCCCTTTTCCAGTATCTGAACTTTTGGGGCTAATTTCAGGACATACTTATGGTTTTTGAAATGTAGCTGGGCTAGAAATTTCgatgagacctggcaaccctgatccTGATACATATCCCAATCTCTCAATCCAGAATGCCTGATTGTCAGAGATATTCCGCACACCGAATATATTTCTCCATAGaagtttgaatttttatttaaattttgaaaCCAACTGTCCACAGACATGGACATTATCCAGCAACAGTCTTTTGGACATGTCCTGGATaaaattgctcttttttttttgttcaaattaaaacattttaagcttTAGTAATTTAAGTAGTAATTAAATTTAAGTAGGTGAGTAATTAAATTTAAGTAGTAGtaaatttaagtaatttaagtTAGAATAAAAAttactctaacacacctgaagCTCATCAATGGCTTGATAGTGAGACTACACTGgtctatataataaaaataagtacaaTGTTAATTTACTGTTAGtagtacattaatatttatacttCCAACTAGGGACACTGTAGACCACttaattatattacatattttttgaaACAgaatcttaatttttttatttgaatattgtttgttttatattttagacctactattaatgaatgaattaatgcatgggacat
>XM_026925181.2
GTCAGTGTGAGGAGTGCTGTCTGTTGTAGTAAATGGAGCATGAAGATTCTGGATGGTAAACTGAATGATCACTCTACATagCTATTCCCTGGATTGTGGAGGATCCCCGGGGAAGTCCAAAGAGTATAAAATGAGGAGGAGTTCTGAGAGCATGAAGAGTCGTGTCCTGGATGAATCACACTTTGAACTCCTTAACAAGAACCTccagagaagcagctccataCGAACCACCAGCACAATAGATGAGGAGGGGGCTGATCGTTCAGACGGACCTCTTAATCGCAGTAGTTTCAAGAACCATAGCAAAACATTCCACAAACATTTCCCAGAAATCTCTGAGATGGAGGATCTGATTTATGCTTTCACCTGTGCCCTCCAAAAGGAAGTGCTCTACCATGGCAAGATGTACGTGTCACACCAGCATGTGTGTTTCTACTCCTCTGTTCTCCTGAAAGAGACCAAGgTTCAGATACATATGTCCACAATCCAGAttataaagaagaagaacacaGCACGGGTTGTACCCAATGCAATCTCCATCATCACCAAAACTGGAGACAAAtatcTGTTTGGGTCGTTACGGAATCGAGACGTGTGTTTCAATGTCCTGAGGTCTATATGTCCACAGCTACAGAATGCAAGTCTTCAAATGTCTCCTGTAGAAAACGGCCATGAACTGGAAGTCGACGCAATTTCCAGTCACTCCAGTCAGGAGGACAGTACAGACCCTCACAGGTTCTCTGTCTCAGGGCAGGACAGGAAGACGAGCAGCAATGTTCCTCCCTTGTCATCAGTCTCTAACATTTCCCACGTCGAAGCAAGAAACAACTCCACATCATGCAACAGCACCAACAGAGATGGCCACTCTTCAGAGGAGAACACAGCTGTCTCCTGGGTGGCCATGGTAACGGAGAAGATCAGATCTTTCCTCTCCGTGGGAGGCACGACCAGCGTCAACAAACTCGTCACTGTCTATCTCATACTagttCTGCTCCTGGTCCTGTCATCTGGCTACATTGGTCTGCGTATTGCAGCTTTGGAAGAGCAGCTGAGCACACTTGGAGCAACGACTGAGTTTGGCCTACAGAGATCGTATAAGGAAACATAACACCTTGCCTGCATGAAGAGCCTGAAACATCCTGGAGGAGTCAAAACAAAGAACTTTCCATCTCTTAACATGCAGCACAACACAAGTCTTCACTGGCACAGTGAACTGACCGAGAATGAATCTGAAAACAGCAGACTTTATTTCCCTGGAGGTCTGCTCAGACTCTGGTTCCAGCCATGTCCCAAGTAGTGCACTGCATTTGGTGGTGGTGTAACCAAATAGAGAATTAACTCTTTAATGCATGGCATCCACCCTCAGGTACAGCTGAATTAAAAGTGGATtgaattggattttttttaggaaaGTATTAGAtacaaatatatgtaatatgccTCTACAGCACTTGGTGGCAAAGACATTAGATCATTACTATTCTGTAACACAAACCATtattctgatcagggttgccagaGTCATGTTTTTATGCCAAATTTGGCTACGTCTGAAGCAAAGTTGCAGTTGGAAAGCATGTCTGTAGGTAAAAttagatcttgttttaaagcaaataatctgaattaattCTAATCAATTTCAAACACAGGATATGATGAAAAAAGGGAAAGTGTTagtgcagacagtgtatctttcatttctgttttaatgtgGTTAATGTCCATACCAAATGATAAAAAGGTGTATTGTAGATATTGCAAGTCAGAAATGTGTGTACACCATTACACCCATACAAAGAGTAAGAAAAACAAGGATAATGCATTTCCCTTTTCCAGTATCTGAACTTTTGGGGCTAATTTCAGGACATACTTATGGTTTTTGAAATGTAGCTGGGCTAGAAATTTCgatgagacctggcaaccctgatccTGATACATATCCCAATCTCTCAATCCAGAATGCCTGATTGTCAGAGATATTCCGCACACCGAATATATTTCTCCATAGaagtttgaatttttatttaaattttgaaaCCAACTGTCCACAGACATGGACATTATCCAGCAACAGTCTTTTGGACATGTCCTGGATaaaattgctcttttttttttgttcaaattaaaacattttaagcttTAGTAATTTAAGTAGTAATTAAATTTAAGTAGGTGAGTAATTAAATTTAAGTAGTAGtaaatttaagtaatttaagtTAGAATAAAAAttactctaacacacctgaagCTCATCAATGGCTTGATAGTGAGACTACACTGgtctatataataaaaataagtacaaTGTTAATTTACTGTTAGtagtacattaatatttatacttCCAACTAGGGACACTGTAGACCACttaattatattacatattttttgaaACAgaatcttaatttttttatttgaatattgtttgttttatattttagacctactattaatgaatgaattaatgcatgggacat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925179.2 True 2540 mRNA 0.40 13 13571709 13587075
XM_026925181.2 False 2477 mRNA 0.40 13 13574606 13587075

Neighbor

gene id symbol gene type direction distance location
LOC113533157 LOC108280702,LOC108433088 coding upstream 6506 13437035 ~ 13565203 (+)
fem1a LOC108280701,LOC108433090,LOC105903982,LOC106600049,LOC107384124,LOC105020399 coding upstream 145743 13422324 ~ 13425966 (+)
LOC113533546 LOC108280911,LOC105904033,LOC106599985,LOC105020641,LOC106569538,LOC103047033 coding upstream 160898 13390167 ~ 13410811 (+)
prkab2 prkab2,LOC108280523,LOC108433095,LOC102781441,LOC101470867,LOC100694198 coding upstream 266272 13299508 ~ 13305437 (+)
sema4e LOC108280345 coding upstream 286457 13267754 ~ 13285252 (+)
ranbp3b ranbp3,ranbp3b,LOC108439867,LOC107750915 coding downstream 49390 13636465 ~ 13658131 (+)
LOC113533233 piezo2,LOC108414168 coding downstream 133891 13720966 ~ 13807258 (+)
rab12 rab12,LOC107696134,LOC107750912 coding downstream 233590 13820665 ~ 13834815 (+)
ndufv2 ndufv2,LOC107596229,LOC107754586,LOC107696125 coding downstream 345571 13932646 ~ 13947792 (+)
ankrd12 ankrd12,LOC108280287 coding downstream 362651 13949726 ~ 13985056 (+)
G319415 NA non-coding upstream 60982 13505106 ~ 13510727 (+)
LOC117599983 NA non-coding upstream 150326 13418555 ~ 13421383 (+)
G319382 NA non-coding upstream 160102 13363825 ~ 13411607 (+)
G319342 NA non-coding upstream 265566 13239147 ~ 13306143 (+)
G319340 NA non-coding upstream 326439 13202033 ~ 13245270 (+)
G319755 LOC108280256,LOC106569623,LOC108439880,LOC107687929,LOC107754609,LOC107596296 non-coding downstream 2524 13589599 ~ 13590316 (+)
G319867 NA non-coding downstream 269890 13856965 ~ 13894441 (+)
LOC117595740 NA non-coding downstream 317452 13904527 ~ 13910280 (+)
G319886 NA non-coding downstream 321788 13908863 ~ 13909635 (+)
LOC117595739 NA non-coding downstream 324496 13911571 ~ 13919146 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other upstream 417182 13021142 ~ 13154527 (+)
G319170 NA other upstream 768690 12765055 ~ 12803019 (+)
G318439 NA other upstream 2102210 11467299 ~ 11469499 (+)
per2 LOC108280459,LOC108439864 other upstream 2106940 11399884 ~ 11464769 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other upstream 2837621 10730346 ~ 10734088 (+)
LOC113533270 mtcl1 other downstream 250358 13837433 ~ 13897914 (+)
zmp:0000000521 zmp:0000000521,LOC108280721,LOC107696078,LOC108442439,LOC107596226,LOC105888700 other downstream 493174 14080249 ~ 14127012 (+)
rab31 rab31 other downstream 799163 14386238 ~ 14466753 (+)
tle2c zgc:136336,LOC108280589,LOC108427215 other downstream 1050706 14637781 ~ 14666508 (+)
ly97.3 LOC108280687 other downstream 1240167 14827242 ~ 14828778 (+)

Expression


Co-expression Network