epc1b (LOC108280341,LOC108442943)


Basic Information

Item Value
gene id epc1b
gene name LOC108280341,LOC108442943
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 9416189 ~ 9486194 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925207.2
GGGTTGGGCCGTGAAGAGCGAACGGAGTCTTAAAGAGTTTTTAATGTCCGCCATGTTGGCTATGGCGTACTGAACCAAAGAAAGAGACCGGAGCCAGTAGGAAAAGTAGACCGACAGAGAGCGAACGAGATCCGGGCTTTCCCGGTTTCGCTCGCTCCGCTATATTATACCTACAGTCAATCGAAACGTAGACTCCGGgatcacaaaataaaatctttcatGACAGCTGTATTCAAATCAATGGTGAACGTTAGGAGATCGGATACATTTATGCTGCATCTcgtattattaaaaaaatgagtaaattgTCGTTTCGGGCACGGGCGCTGGACGCTTCCAAGCCTTTACCCGTCTTCCGTTGTGAGGATCTACCCGACCTGCACGAATATGCATCTATTAATCGGGCTGTGCCACAGATGCCAACGGggatggagaaagaggaggaatcGGAGCATCATCTGCAGCGGGCGATCTCAGCACAACAGGTATACGGGGAGAAGAGGGACAACATGGTGATTCCTGTGCCTGAGGCTGAGAGCAATATCACATACTATGAGAGCCTCTATCCAGGTGACTTTAAGATGCCCAAGCAGCTCATCCACATACAGCCCTTTAGCTTGGACACAGAGCAACCGGATTATGACCTGGACTCAGATGATGATGTGTTCGTTACCAAGCTAAGGAAGAAAATGGAGGTGGGGGCTCTGCAGTTTGAGGAGATGATCGACCGGCTGGAGAAAGGCAGTGGGCAGCAGTTGGTGACTTTGCAGGAGGCAAAACTCCTTCTCAAGGAGGATGATGAGTTAATCAGGGAGGTGTTTGAGTATTGGACCATGAAGAGAAAATCATGTAAAAGTGGCTCTCTCATCCCGGCCGTAAAACAGGAGAAGCGAGATGGTTCGAGCACCAGTGACCCCTATGTTGCCTTCAGGCGCAGAACAGAAAAAATGCAGACCAGGAAGAATCGTAAGAATGATGAGGTTTCCTATGAGAAAATGTTAAAGTTGAGAAGAGATCTAAGCAGGGCTGTTACCATACTGGAAATGATAAAGAGACGTgagaagagcaagagagaatTGCTGCACCTCACGCTGGAGATAGTGGAGAAGAGAAATGGCATGGCTGATTTTGGGGGTGAGGTAATGGCAGAGGTTCTGGCTCAGAGGGCACTAGAGAAGCCGGTTATTCCCCTGATCCCCATCACCACCAGCAGCCAGTACAGACATACAGAAAATGACCGCGACTACAAGAACAAGCTGGACAAGCCAGAAGTGGTACGTCAGAAGAGGAAGTATGAGAAGAAACCGAAGCCCTTGCTGCTATCTGGTCAGTCTACCCCTGCAGCAGTCAACAGTAAAGCCCTTAACCAGTATGATTTCCCCAGCTCAGATGAAGAGCCCTACTCACAGCTATTTTCTGGCTCCTCGGAGGCAGAAGAGGAGAATGATCCTGATGGTGTGTTTGCGTTTAGACGCAGGTCTGGCTGCCACTATCAATCTGTGTGTGGAGGGCAGGGTTTATGGCCATGGTCAGATTCTGCTGAGGGTGGTTTGGGAGATGCTCGTTACCGTTACTCTGTCACCACACTCACCATACCTCACCGATGTGTGGGATTAGCACGACGAAGGGTTGGAAGAGGGGGCAGggttcTGTTGGATCGGGCCTACTCTGACTGGAATGCTGTGTATCATGGGTTGGGCTTAGGTTCTCCCGCCCCCTCATTTACCCACCAGCCTGCTAGTATGGATACCTCACATACCATTGTCCAGACCTCTGCCTCGGGTCCTTCCTCCTGCTCCTCTACATACTCATCAGACCTCTCGCAGATCCTCCATAATATTAAGAGCTGTCGCTGGAGGCACTTCAGACCTTGGACGGCTCTGTCCCATGACTCCAATATCTTCCAGCCCTGCTCAGCACAGAAGCTGAGCTCTGGCCTCTTCAGTCCAGATAAAAATCGTGCCGACAGCAGAGCAGCTGCCGCCCCACCCATAACTGtgtttaCGGCTGAGCAGTACCATCACCATCAGGAGCAGCTAGCCTTGATGAAGAAAGACCAGCTGGAGCAGGCACAGCAGCAGCACCGAGTCAATGCCAAGACACAAactttttcatCCATGATCTTAGACTCTGCGAGTGCACAGTTTGCTGCCTCTGCACTGGTGACTTCGGAACAGCTGATGGCACTGAAGAGTAAAGAGGAAGGAATTCTGGGAGTTGGAGTCAATGGAGTTATATCAGCCTCAGGAGTCTATAAGGGCTTGCACTACACAAGAACATCCTCCACCAGCCCTATACCCACCTCTAACCATCATCAGTGCAACACCCCTACCTCCAACCCCAACAATGGAACTTCCTCAGCTAATCACCATGTTGGCTCAGACAGCCCTGCCCCTACACAGGTGCTATTAGCCGGGGCAATGAGAGTGGGTGTGCCATCATCAGGTGCAGCATTAAGTGTGCGGCATCTGCAGCGTCAGCTCACGGTTCCAACTTCTGCCCTAAAACTTGCAGCCAATGTCAACAGGCAGCTCCCTAAAGTCACAACCAGCTCATCCACCCTTGACATGGGCACCAGgGAAAATCATGATCAAGAGAAGCCAACATTGAACAGTATAACAGAAAACACTGTAGCAATGGAGGTTACGTAGCCCTGCCCCTCTTCCTTCATCACCCCAAGATTTGGGGCATCTAATCTAGGTGCTGTGCATCAGTGACATTGTGTGTCAGCGGCAGCTGTTGGGACTAGACTGCAGTGCTTGCCGTTTTTGTTTCGTTAATGTCATCTGTAAATTATGAAATAAGCATTTATTCTATGTACAGTGATGCATATTTGTTATATGGCCCTTTGTACATAACATTTACTTGAATACAGAAATTGTTCAGTTATGTTTTGCACTTAAGGAGGGGGGGTTCAAAAAACTAACTGCGACTTTGTTGGAGTGAATGgtggtgtgtatgtttgtatggTGATGTGAGATCACATGCATGGTGTAAACCTGctgttttatctatttattgtgAGGTGTTTACAGGAATTTTTagttagtatttttttatactgtgtaACCTGTTGCGGTCCtgtgtgggtgtctgtgtgtttaaccATATTATGTGTCAGTTTTCTTGTGAAAAGATGCAGGTTTTTCCCCTTGTTCTGTTCCCTTGTATTACAGTCAGCTCCCCTCATGGTCATCTGTGTCAAAGatcaagtgtgtgtatatacacacacacacacacacacacacacacacacacacacacacacacacacacactgtccact
>XM_026925208.2
GGGGGTTGGGCCGTGAAGAGCGAACGGAGTCTTAAAGAGTTTTTAATGTCCGCCATGTTGGCTATGGCGTACTGAACCAAAGAAAGAGACCGGAGCCAGTAGGAAAAGTAGACCGACAGAGAGCGAACGAGATCCGGGCTTTCCCGGTTTCGCTCGCTCCGCTATATTATACCTACAGTCAATCGAAACGTAGACTCCGGgatcacaaaataaaatctttcatGACAGCTGTATTCAAATCAATGGTGAACGTTAGGAGATCGGATACATTTATGCTGCATCTcgtattattaaaaaaatgagtaaattgTCGTTTCGGGCACGGGCGCTGGACGCTTCCAAGCCTTTACCCGTCTTCCGTTGTGAGGATCTACCCGACCTGCACGAATATGCATCTATTAATCGGGCTGTGCCACAGATGCCAACGGggatggagaaagaggaggaatcGGACAAAAAGGGCTGTGACATGGAAAGAAATGGAGGATTATTACAGCTTCCAgGAGCATCATCTGCAGCGGGCGATCTCAGCACAACAGGTATACGGGGAGAAGAGGGACAACATGGTGATTCCTGTGCCTGAGGCTGAGAGCAATATCACATACTATGAGAGCCTCTATCCAGGTGACTTTAAGATGCCCAAGCAGCTCATCCACATACAGCCCTTTAGCTTGGACACAGAGCAACCGGATTATGACCTGGACTCAGATGATGATGTGTTCGTTACCAAGCTAAGGAAGAAAATGGAGGTGGGGGCTCTGCAGTTTGAGGAGATGATCGACCGGCTGGAGAAAGGCAGTGGGCAGCAGTTGGTGACTTTGCAGGAGGCAAAACTCCTTCTCAAGGAGGATGATGAGTTAATCAGGGAGGTGTTTGAGTATTGGACCATGAAGAGAAAATCATGTAAAAGTGGCTCTCTCATCCCGGCCGTAAAACAGGAGAAGCGAGATGGTTCGAGCACCAGTGACCCCTATGTTGCCTTCAGGCGCAGAACAGAAAAAATGCAGACCAGGAAGAATCGTAAGAATGATGAGGTTTCCTATGAGAAAATGTTAAAGTTGAGAAGAGATCTAAGCAGGGCTGTTACCATACTGGAAATGATAAAGAGACGTgagaagagcaagagagaatTGCTGCACCTCACGCTGGAGATAGTGGAGAAGAGAAATGGCATGGCTGATTTTGGGGGTGAGGTAATGGCAGAGGTTCTGGCTCAGAGGGCACTAGAGAAGCCGGTTATTCCCCTGATCCCCATCACCACCAGCAGCCAGTACAGACATACAGAAAATGACCGCGACTACAAGAACAAGCTGGACAAGCCAGAAGTGGTACGTCAGAAGAGGAAGTATGAGAAGAAACCGAAGCCCTTGCTGCTATCTGGTCAGTCTACCCCTGCAGCAGTCAACAGTAAAGCCCTTAACCAGTATGATTTCCCCAGCTCAGATGAAGAGCCCTACTCACAGCTATTTTCTGGCTCCTCGGAGGCAGAAGAGGAGAATGATCCTGATGGTGTGTTTGCGTTTAGACGCAGGTCTGGCTGCCACTATCAATCTGTGTGTGGAGGGCAGGGTTTATGGCCATGGTCAGATTCTGCTGAGGGTGGTTTGGGAGATGCTCGTTACCGTTACTCTGTCACCACACTCACCATACCTCACCGATGTGTGGGATTAGCACGACGAAGGGTTGGAAGAGGGGGCAGggttcTGTTGGATCGGGCCTACTCTGACTGGAATGCTGTGTATCATGGGTTGGGCTTAGGTTCTCCCGCCCCCTCATTTACCCACCAGCCTGCTAGTATGGATACCTCACATACCATTGTCCAGACCTCTGCCTCGGGTCCTTCCTCCTGCTCCTCTACATACTCATCAGACCTCTCGCAGATCCTCCATAATATTAAGAGCTGTCGCTGGAGGCACTTCAGACCTTGGACGGCTCTGTCCCATGACTCCAATATCTTCCAGCCCTGCTCAGCACAGAAGCTGAGCTCTGGCCTCTTCAGTCCAGATAAAAATCGTGCCGACAGCAGAGCAGCTGCCGCCCCACCCATAACTGtgtttaCGGCTGAGCAGTACCATCACCATCAGGAGCAGCTAGCCTTGATGAAGAAAGACCAGCTGGAGCAGGCACAGCAGCAGCACCGAGTCAATGCCAAGACACAAactttttcatCCATGATCTTAGACTCTGCGAGTGCACAGTTTGCTGCCTCTGCACTGGTGACTTCGGAACAGCTGATGGCACTGAAGAGTAAAGAGGAAGGAATTCTGGGAGTTGGAGTCAATGGAGTTATATCAGCCTCAGGAGTCTATAAGGGCTTGCACTACACAAGAACATCCTCCACCAGCCCTATACCCACCTCTAACCATCATCAGTGCAACACCCCTACCTCCAACCCCAACAATGGAACTTCCTCAGCTAATCACCATGTTGGCTCAGACAGCCCTGCCCCTACACAGGTGCTATTAGCCGGGGCAATGAGAGTGGGTGTGCCATCATCAGGTGCAGCATTAAGTGTGCGGCATCTGCAGCGTCAGCTCACGGTTCCAACTTCTGCCCTAAAACTTGCAGCCAATGTCAACAGGCAGCTCCCTAAAGTCACAACCAGCTCATCCACCCTTGACATGGGCACCAGgGAAAATCATGATCAAGAGAAGCCAACATTGAACAGTATAACAGAAAACACTGTAGCAATGGAGGTTACGTAGCCCTGCCCCTCTTCCTTCATCACCCCAAGATTTGGGGCATCTAATCTAGGTGCTGTGCATCAGTGACATTGTGTGTCAGCGGCAGCTGTTGGGACTAGACTGCAGTGCTTGCCGTTTTTGTTTCGTTAATGTCATCTGTAAATTATGAAATAAGCATTTATTCTATGTACAGTGATGCATATTTGTTATATGGCCCTTTGTACATAACATTTACTTGAATACAGAAATTGTTCAGTTATGTTTTGCACTTAAGGAGGGGGGGTTCAAAAAACTAACTGCGACTTTGTTGGAGTGAATGgtggtgtgtatgtttgtatggTGATGTGAGATCACATGCATGGTGTAAACCTGctgttttatctatttattgtgAGGTGTTTACAGGAATTTTTagttagtatttttttatactgtgtaACCTGTTGCGGTCCtgtgtgggtgtctgtgtgtttaaccATATTATGTGTCAGTTTTCTTGTGAAAAGATGCAGGTTTTTCCCCTTGTTCTGTTCCCTTGTATTACAGTCAGCTCCCCTCATGGTCATCTGTGTCAAAGatcaagtgtgtgtatatacacacacacacacacacacacacacacacacacacacacacacacacacacactgtccact
>XM_034314695.1
GCAGGTCATCTACGAACAGATTGAGATTCTGGAGGTCTTTGGATTGGTCTTCTACTGGAAATACATCCAACACCTCAGCTTCGTTCGAGGCCACTTTGTGGAGCCTAAGCCTTTAGCTTGGACACAGAGCAACCGGATTATGACCTGGACTCAGATGATGATGTGTTCGTTACCAAGCTAAGGAAGAAAATGGAGGTGGGGGCTCTGCAGTTTGAGGAGATGATCGACCGGCTGGAGAAAGGCAGTGGGCAGCAGTTGGTGACTTTGCAGGAGGCAAAACTCCTTCTCAAGGAGGATGATGAGTTAATCAGGGAGGTGTTTGAGTATTGGACCATGAAGAGAAAATCATGTAAAAGTGGCTCTCTCATCCCGGCCGTAAAACAGGAGAAGCGAGATGGTTCGAGCACCAGTGACCCCTATGTTGCCTTCAGGCGCAGAACAGAAAAAATGCAGACCAGGAAGAATCGTAAGAATGATGAGGTTTCCTATGAGAAAATGTTAAAGTTGAGAAGAGATCTAAGCAGGGCTGTTACCATACTGGAAATGATAAAGAGACGTgagaagagcaagagagaatTGCTGCACCTCACGCTGGAGATAGTGGAGAAGAGAAATGGCATGGCTGATTTTGGGGGTGAGGTAATGGCAGAGGTTCTGGCTCAGAGGGCACTAGAGAAGCCGGTTATTCCCCTGATCCCCATCACCACCAGCAGCCAGTACAGACATACAGAAAATGACCGCGACTACAAGAACAAGCTGGACAAGCCAGAAGTGGTACGTCAGAAGAGGAAGTATGAGAAGAAACCGAAGCCCTTGCTGCTATCTGGTCAGTCTACCCCTGCAGCAGTCAACAGTAAAGCCCTTAACCAGTATGATTTCCCCAGCTCAGATGAAGAGCCCTACTCACAGCTATTTTCTGGCTCCTCGGAGGCAGAAGAGGAGAATGATCCTGATGGTGTGTTTGCGTTTAGACGCAGGTCTGGCTGCCACTATCAATCTGTGTGTGGAGGGCAGGGTTTATGGCCATGGTCAGATTCTGCTGAGGGTGGTTTGGGAGATGCTCGTTACCGTTACTCTGTCACCACACTCACCATACCTCACCGATGTGTGGGATTAGCACGACGAAGGGTTGGAAGAGGGGGCAGggttcTGTTGGATCGGGCCTACTCTGACTGGAATGCTGTGTATCATGGGTTGGGCTTAGGTTCTCCCGCCCCCTCATTTACCCACCAGCCTGCTAGTATGGATACCTCACATACCATTGTCCAGACCTCTGCCTCGGGTCCTTCCTCCTGCTCCTCTACATACTCATCAGACCTCTCGCAGATCCTCCATAATATTAAGAGCTGTCGCTGGAGGCACTTCAGACCTTGGACGGCTCTGTCCCATGACTCCAATATCTTCCAGCCCTGCTCAGCACAGAAGCTGAGCTCTGGCCTCTTCAGTCCAGATAAAAATCGTGCCGACAGCAGAGCAGCTGCCGCCCCACCCATAACTGtgtttaCGGCTGAGCAGTACCATCACCATCAGGAGCAGCTAGCCTTGATGAAGAAAGACCAGCTGGAGCAGGCACAGCAGCAGCACCGAGTCAATGCCAAGACACAAactttttcatCCATGATCTTAGACTCTGCGAGTGCACAGTTTGCTGCCTCTGCACTGGTGACTTCGGAACAGCTGATGGCACTGAAGAGTAAAGAGGAAGGAATTCTGGGAGTTGGAGTCAATGGAGTTATATCAGCCTCAGGAGTCTATAAGGGCTTGCACTACACAAGAACATCCTCCACCAGCCCTATACCCACCTCTAACCATCATCAGTGCAACACCCCTACCTCCAACCCCAACAATGGAACTTCCTCAGCTAATCACCATGTTGGCTCAGACAGCCCTGCCCCTACACAGGTGCTATTAGCCGGGGCAATGAGAGTGGGTGTGCCATCATCAGGTGCAGCATTAAGTGTGCGGCATCTGCAGCGTCAGCTCACGGTTCCAACTTCTGCCCTAAAACTTGCAGCCAATGTCAACAGGCAGCTCCCTAAAGTCACAACCAGCTCATCCACCCTTGACATGGGCACCAGgGAAAATCATGATCAAGAGAAGCCAACATTGAACAGTATAACAGAAAACACTGTAGCAATGGAGGTTACGTAGCCCTGCCCCTCTTCCTTCATCACCCCAAGATTTGGGGCATCTAATCTAGGTGCTGTGCATCAGTGACATTGTGTGTCAGCGGCAGCTGTTGGGACTAGACTGCAGTGCTTGCCGTTTTTGTTTCGTTAATGTCATCTGTAAATTATGAAATAAGCATTTATTCTATGTACAGTGATGCATATTTGTTATATGGCCCTTTGTACATAACATTTACTTGAATACAGAAATTGTTCAGTTATGTTTTGCACTTAAGGAGGGGGGGTTCAAAAAACTAACTGCGACTTTGTTGGAGTGAATGgtggtgtgtatgtttgtatggTGATGTGAGATCACATGCATGGTGTAAACCTGctgttttatctatttattgtgAGGTGTTTACAGGAATTTTTagttagtatttttttatactgtgtaACCTGTTGCGGTCCtgtgtgggtgtctgtgtgtttaaccATATTATGTGTCAGTTTTCTTGTGAAAAGATGCAGGTTTTTCCCCTTGTTCTGTTCCCTTGTATTACAGTCAGCTCCCCTCATGGTCATCTGTGTCAAAGatcaagtgtgtgtatatacacacacacacacacacacacacacacacacacacacacacacacacacacactgtccact

Function

NR:

description
PREDICTED: enhancer of polycomb homolog 1-like isoform X1

GO:

id name namespace
GO:0035267 NuA4 histone acetyltransferase complex cellular_component
GO:0032777 Piccolo NuA4 histone acetyltransferase complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925207.2 False 3286 mRNA 0.48 14 9416189 9486192
XM_026925208.2 True 3340 mRNA 0.48 15 9416189 9486194
XM_034314695.1 False 2786 mRNA 0.48 13 9416189 9462819

Neighbor

gene id symbol gene type direction distance location
ift57 ift57,LOC108280285 coding downstream 658161 8726321 ~ 8758028 (-)
tmem71 tmem71 coding downstream 701931 8690052 ~ 8714258 (-)
si:dkey-7l6.3 LOC108280163 coding downstream 728258 8678819 ~ 8687931 (-)
LOC113543001 LOC108280205,LOC108428270,LOC107749125,LOC107659567,LOC107602634 coding downstream 864181 8505221 ~ 8552008 (-)
basp1 LOC108280584 coding downstream 1236088 8155454 ~ 8180101 (-)
zeb1a LOC108280338 coding upstream 165381 9651575 ~ 9685427 (-)
LOC113533399 LOC108280347 coding upstream 229751 9715945 ~ 9788653 (-)
prpf38b prpf38b,LOC107660074,LOC107568745,LOC107730443,LOC103395982 coding upstream 388589 9874783 ~ 9894767 (-)
LOC117599941 LOC107739197,LOC107573659 coding upstream 449029 9935223 ~ 9942312 (-)
wdr47a wdr47,LOC108261062,LOC108428282,LOC107749106,LOC107730459 coding upstream 861647 10347841 ~ 10392507 (-)
G317422 NA non-coding downstream 1060 9411315 ~ 9415129 (-)
LOC117599963 NA non-coding downstream 6246 9404384 ~ 9409943 (-)
G317370 NA non-coding downstream 183293 9232672 ~ 9232896 (-)
G317369 NA non-coding downstream 188237 9227615 ~ 9227952 (-)
G317367 itgb1,itgb1b,LOC107659805,LOC108442929 non-coding downstream 197100 9212999 ~ 9219089 (-)
G317428 NA non-coding upstream 14471 9500665 ~ 9500867 (-)
G317470 NA non-coding upstream 153178 9639372 ~ 9642911 (-)
LOC117599950 NA non-coding upstream 171708 9657902 ~ 9659672 (-)
LOC117599991 NA non-coding upstream 210562 9696756 ~ 9699099 (-)
G317538 NA non-coding upstream 219237 9705431 ~ 9705970 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other downstream 442914 8969204 ~ 8973275 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other downstream 462079 8903824 ~ 8954110 (-)
G317176 NA other downstream 530480 8883649 ~ 8885709 (-)
vcpip1 vcpip1 other downstream 927560 8477223 ~ 8488629 (-)
rps28 rps28 other downstream 1848055 7565081 ~ 7568134 (-)
ccl20a.3 LOC108261059 other upstream 1041088 10527282 ~ 10528279 (-)
wu:fb63a08 LOC108280878 other upstream 2133682 11619876 ~ 11705877 (-)
LOC113533649 LOC108280860,LOC108433106 other upstream 3422259 12908453 ~ 12928071 (-)
ccl25a NA other upstream 4126322 13612516 ~ 13615743 (-)
LOC113533556 LOC108280202 other upstream 4178987 13665181 ~ 13680110 (-)

Expression


Co-expression Network