atp1a2a (atp1a2a,LOC108261056,LOC108428278,LOC107692876,LOC107749099,LOC107721700)


Basic Information

Item Value
gene id atp1a2a
gene name atp1a2a,LOC108261056,LOC108428278,LOC107692876,LOC107749099,LOC107721700
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10061226 ~ 10130722 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925209.2
AGGAGGTGGCAATCCCAAAAAAGACCACCCCTCCTTTAAACACGTGTTGAGAGAGAACGACATCTGTCTTTCATACTTTTAGAACATGGGGAAAGGGTATGGACGTGATATGAGCCCTGAGGCTTCTCAGAAcaatggaaagaagaaaaagaaagataaagattTGGATGAGCTGAAGAAAGAGGCAGCTTTGGATGATCATAAGCTCTCTCTGGAAGAGTTGTCAGCTCGCTATGAGGTGGACCTGTTTAAAGGCCTGACCCATAAAAGAGCATTGGAGCTCCTGGCACGGGATGGGCCTAATGTTCTGACTCCACCTCCAACCATCCCAGAGTGGGTGAAATTCTGTAAACAATTGTTTGGAGGGTTCTCCATCCTCTTGTGGATCGGTGCTGTCTTGTGTTTCCTTGCTTATGGTATCCAGTTCGCAACTGAGGAAGAGCCAGCCAATGACAATTTATATTTGGGAGTAGTCCTGGCTGCTGTGGTCATCATCACTGGCTGCTTTTCCTATTACCAAGAGGCCAAGAGTTCACGCATCATGGACTCCTTCAAGAACATGGTGCCACAGCAAGCTTTGGTGATCCGTGAGGGTGAGAAGAAGCAAATCAATGCAGAGGAGGTGGTTCTGGGAGATCTGGTTGAAATAAAGGGGGGCGATCGCATTCCGGCTGACCTACGGTTCATCTCTTCCAGTGGCTGCAAGgTAGACAATTCCTCTCTGACAGGAGAGTCTGAGCCTCAAACCCGTTCTCCTGACTGCACTCACGAAAACCCTCTTGAGTCCAGAAACATTGGCTTCTTCTCCACTAACTGTGTGGAAGGCACGGCCCGTGGCATTGTGATCGCAACAGGAGATCGTACAGTTATGGGGCGAATAGCGACCCTGGCTTCTGGGTTGGAGGTGGGCCAGACCCCCATCAATTTGGAAATTGAGCACTTCATCCACATCATTACTGGTGTAGCTGTCTTTCTCGGTGTCTCGTTCTTTATCCTCTCACTCATCCTCGGCTACACGTGGCTCGAGGCTGTCATCTTCCTCATTGGCATTATTGTTGCCAATGTGCCTGAAGGACTGTTGGCAACAGTCACGGTGTGTCTGACCCTAACAGCTAAGCGTATGGCACATAAGAATTGTTTGGTGAAGAATCTGGAGGCTGTAGAGACTTTGGGCTCCACCTCCACTATATGCTCAGATAAGACTGGAACCCTGACCCAGAACCGCATGACCGTGGCCCACATGTGGTTCGACAACCAGATCTACGAGGCTGATACTACAGAGGATCAATCAGGCAATGGGGCCTTTGATAAGAGCTCCCCCACCTGGACTGCTCTGTCACGTGTAGCAGCACTCTGCAATCGTGCTGTCTTCAAACCTGGACAAAAAGATATTCCTATTCTGAAGATGGAGACAGCAGGTGATGCATCAGAGTCTGCTTTGCTAAAGTGTATTGAGCTCTCCTGTGGGTCTGTAAAGGCATTTAGAGAGAGAAACCCTAAAGTTGGAGAAATTCCATTCAACTCAACCAACAAGTTTCAGCTGTCTATCCATGAAATTGAAGACAGTCCAACTGGGCATCTCCTCGTGATGAAAGGAGCTCCCGAGAGGATTTTGGACAGGTGCAATACAATCATGATCAATGGGCAAGAGCTTCCTCTGGATGATGACTGGAGAGATACATTCCAGGGAGCCTACATGGACCTGGGGGGTCTCGGGGAGAGAGTGCTGGGCTTCTGCCACTTGTTCCTGTCACCCTCTCATTTCCCGCGAGGTTTTGCATTTGACTGCGATGACATCAATTTCCCCATGgaccatatgtgctttctgGGTCTTGTGTCCATGATAGACCCCCCGAGAGCTGCCGTGCCTGATGCCGTGGGCAAGTGTCGGTCGGCTGGGATAAAGGTGATCATGGTAACTGGAGACCATCCAATTACGGCTAAGGCAATCGCTAAAGGTGTTGGCATCATCTCAGAAGGCAATGAGACAGTGGAGGACATTGCAGAGAGACTTAACATCCCATTAAGTCAAGTTAACCCACGAGATGCTAAGGCATGTGTAGTGCATGGTGCTGATCTGAAGGAGATGAGTTCCGAGTATTTGGATGATCTCCTGAGAAACCACACTGAGATCGTCTTTGCTCGCACCTCTCCACAACAGAAACTCATCATTGTAGAGGGCTGCCAGCGACagGGTGCTATAGTGGCAGTGACAGGTGATGGGGTAAATGACTCTCCTGCTCTAAAGAGGGCTGACATCGGCATTGCCATGGGAATAGCAGGATCTGACGTCTCCAAACAAGCAGCTGACATGATCCTGCTGGATGACAACTTCGCATCCATTGTAACAGGGGTGGAGGAGGGTCGTTTGATCTTTGATAACCTGAAGAAGTCAATAGCCTACACTCTTACCAGCAACATTCCTGAgatctctccctttctcctctTCATCGCTGCTAGTGTTCCTCTGCCTCTGGGCACTGTCACCATCCTCTGCATTGACTTGGGAACTGACATGGTTCCTGCCATTTCTCTGGCTTATGAGTCAGCAGAAAGTGACATTATGAAGCGCCAACCCAGAAACCCCAAAACTGACAAATTGGTCAACGAGAGACTCATTAGTATGGCATATGGGCAGATTGgtatgatCCAGGCCCTGGCTGGGTTCTTTACCTACTTTGTGATATTGGCGGAGAATGGATTTCTGCCTTATAGTCTTCTGGGATTGCGACTTGACTGGGATGATCGCAATGTCAACGATCTTGAGGACAGCTATGGACAGCAATGGaCCTATGAGCAGCGCAAGATCGTGGAGTTCACTTGTCACACATCCTTCTTCGTGAGCAttgtggtggtgcagtgggcTGACCTCATCATCTGCAAAACACGAAGAAATTCCCTTTTTCAGCAGGGCATGAAAAATAAGATTCTGATCTTTGGCCTGTTTGCTGAGACGGCCCTTGCTGCGTTCCTGTCCTACTGCCCTGGAATGGATATTGCTTTGCGCATGTACCCACTCAAGGTGTACTGGTGGTTCTGTGCTCTTCCATATAGCCTGCTCATCTTTATCTATGACGAAATCCGCAAATTAATTCTGAGGAGGAGGCCAGGAGGTTGGGTGGAAAAAGAGACCTACTATTAATggatataaactataaactgtcTATCAAGGTGTATTATCAAAATGTGTTGTTATGGTCTGAACAAGGGTTTCTAACTCCTGTAGTAAAGATGTCCTGCTCTAATGGTTTTACTCTTTCACTGCCTTAAAGTACCTCATTTATCTTATCAGTGCATTATCAGGGTTGCATCAATTCTTCTATGCTATTGATGTGAAAATTTATCTATGTGAAATTTCATATTTGGCATGCTGGTGCTAAATTACTCTTATGAGATGACAGCGGGTGTAATAATTGGCATTATTATGAATAGGATACCTCTTTGAATTCCTGAGTCTAAAACTAAGGAACCATACATGatcaaatgtttatttgtgaTCAAATACTTACTGTGATCTAAGACAGAATGCCTCATCTGTCAGAAAACTTGTGCTGAAAAGCTGTTGATTAACACTATATGTGGTGCTAGTGCAGTGACATTTTAACTCTCAGTGAATAGATTAATCAGGTTCAACATTGTCTGTAAAAACTTACTAAACAACTGGTATTTGGCAAtgtgatgtatttaaaaaaattaaatctaaattaaaaccTTTGACTATTTCAATTTGTCAgaaactttcattcattcatcatcagtaactgctttCTTCTGGTCAGGGTTACAGGGGATCCCTAGCCTATCCTGAGAAACCAGTCCATCGTAGAGCTCCATGCATGTACACAATCTCAGTCATTGTCAGATAAACTTGTCATTGATATATTAGGCCTAGGAGTGTAGGtctaaaaataactttttgctGTTCGTTACGGTCTGAGAGTGAATGCATATGCAGCATTGCAAAATGGTTTAATTAACTCTGTAAGTGAATTTCTTTCTGGGAGTGGATACGCAAGCTGGCATACAACAGTTTCGCTAGTTATCTGGTTGTGATCAATTTAAAAACTCAGTTTAATTCAGTAAAATGTTAGGTTAGTCAGTGCTGGGCATAATGTTCTGTACACTAAGATCTAGCAGTAAAATGCTGGAGAAAATAAGTGTGAAAATTTCAGTAAAACACAATAGAAAGTACAGATGTTGAATGTTTAAGTGTGTCactgttgggtttttttttcccatcttccAAACACTAGCCAAACAAGGCCTACCATTAACGCCAGTGGACCTGGCAAAACTAAAGCCAATCCTCCTGATTCCTCTGGAAAATTGCCAAAGTTCCCCCTAACAGAGGTCTTGTATACATCTTGTATTGTCAtcttctttcagctgttcccattaggggtcaccacagcggatcactgaccctcat

Function

symbol description
atp1a2a Predicted to enable P-type sodium:potassium-exchanging transporter activity. Acts upstream of or within several processes, including animal organ development; heart contraction; and thigmotaxis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including Kupffer's vesicle; brain; heart; musculature system; and pronephric duct. Human ortholog(s) of this gene implicated in alternating hemiplegia of childhood; benign neonatal seizures; familial hemiplegic migraine 2; hypertension; and migraine with aura. Orthologous to human ATP1A2 (ATPase Na+/K+ transporting subunit alpha 2).

NR:

description
Na/K ATPase alpha subunit isoform 2

GO:

id name namespace
GO:0010084 specification of animal organ axis polarity biological_process
GO:0051480 regulation of cytosolic calcium ion concentration biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0001947 heart looping biological_process
GO:0042044 fluid transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function

KEGG:

id description
K01539 ATP1A; sodium/potassium-transporting ATPase subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925209.2 True 4429 mRNA 0.45 24 10061226 10130722

Neighbor

gene id symbol gene type direction distance location
mpz mpz,LOC106600490 coding upstream 7686 10042888 ~ 10053540 (+)
lig1 lig1 coding upstream 27211 10003656 ~ 10034015 (+)
LOC113533165 LOC108280405,LOC100705068 coding upstream 72182 9981186 ~ 9989044 (+)
dnaaf6 pih1d3 coding upstream 108906 9943753 ~ 9952320 (+)
fndc7a LOC108280340 coding upstream 200078 9829378 ~ 9861148 (+)
sdhc sdhc coding downstream 43098 10173820 ~ 10186067 (+)
trnar-ucu_12 NA coding downstream 57029 10187751 ~ 10187824 (+)
cadm3 cadm3,LOC107749121,LOC107600075 coding downstream 65386 10196108 ~ 10288224 (+)
kirrel1b kirrelb,LOC108280344,LOC108428281,LOC107749112,LOC107659821,LOC107557870,LOC107721762 coding downstream 161108 10291830 ~ 10347388 (+)
ccl20a.4 NA coding downstream 402262 10532984 ~ 10534451 (+)
G317633 NA non-coding upstream 120989 9939969 ~ 9940237 (+)
G317621 NA non-coding upstream 181470 9878915 ~ 9879756 (+)
G317618 NA non-coding upstream 185406 9874996 ~ 9875820 (+)
G317529 NA non-coding upstream 241761 9819266 ~ 9819465 (+)
G317526 NA non-coding upstream 245569 9815277 ~ 9815657 (+)
G317754 NA non-coding downstream 26555 10157277 ~ 10157530 (+)
G317761 NA non-coding downstream 55584 10186306 ~ 10187126 (+)
G317939 NA non-coding downstream 373441 10504163 ~ 10510193 (+)
LOC117599937 NA non-coding downstream 386866 10517588 ~ 10520208 (+)
G317946 NA non-coding downstream 393764 10524486 ~ 10524774 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other upstream 83310 9958993 ~ 9977916 (+)
G317390 NA other upstream 646062 9412323 ~ 9415164 (+)
LOC117599964 LOC107387363,LOC107676291,LOC107756568 other upstream 1247816 8811595 ~ 8813410 (+)
G316745 NA other upstream 1792028 8268709 ~ 8269198 (+)
G316744 NA other upstream 1797165 8263339 ~ 8264061 (+)
capn10 capn10 other downstream 405709 10536431 ~ 10562994 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other downstream 433099 10563821 ~ 10568907 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other downstream 599624 10730346 ~ 10734088 (+)
per2 LOC108280459,LOC108439864 other downstream 1269162 11399884 ~ 11464769 (+)
G318439 NA other downstream 1336577 11467299 ~ 11469499 (+)

Expression


Co-expression Network