upf1 (upf1,LOC107660376,LOC107724030,LOC105907049,LOC107696277)


Basic Information

Item Value
gene id upf1
gene name upf1,LOC107660376,LOC107724030,LOC105907049,LOC107696277
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16071106 ~ 16088518 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925268.2
TGTTCACGTCACCATTTCGAGTGGGAGTTGAAGCTTCCTTTCGAAGCCGTACGCGTTCATTCGTGATAACGCTTTTGAGTTTAAATCAAAACAATATTGCGAGCGTGTTcgttttttaaaacatattcattgtgtaagtgtttgtggggtttttttgtttgttttttttttttatttgtgaaagcGGACCTTGCTGGTTGGGGGATAAAAATGAGCGTAGAGGCGTACGGGCCGAGCTCGCAGACTCTCACCTTCCTGGACACGGAGGAAGCGGAGCTGCTCGGAGCCGACACGCAGGGCTCGGAGTTCGAGTTCACCGACTTCACCCTGCCGAGCCAGACTCAAACACAAGGCCAAACCCAGAGTCAGCTCGACAACCAGGTGAATGGACCTGAGGGAGTTCTGCAGAACGGCGATGATGCTGTGGTGAAAACCAGTCAACTTCTGGCAGAGCTGAATTTcgaagaggatgaagaggacaCCTATTACACCAAGGATCTCCCTGTGCATGCCTGCAGTTACTGTGGTATTCATGATCCTGCCTGTGTGGTGTATTGCAACACCAGCAAGAAGTGGTTCTGCAATGGACGTGGCAACACCTCTGGCAGCCATATTGTCAACCATTTGGTGCGTGCCAAATGTAAGGAGGTGACCCTGCATAAAGATGGTCCTTTGGGGGAAACAGTGTTGGAGTGTTACAACTGTGGCTGTCGCAATGTTTTCCTCCTGGGCTTCATTCCAGCCAAGGCCGATTCTGTCGTGGTGCTCCTGTGCAGgcAGCCATGTGCCAGTCAAAGCAGTCTGAAGGACATTAACTGGGACAGCTCCCAGTGGCAGCCTTTGATCCAGGACCGGTGCTTTCTGTCCTGGCTGGTGAAGATCCCGTCTGAGCAGGAGCAGCTCAGGGCACGCCAGATCACCGCTCAGCAGATCAACAAACTGGAGGAGCTCTGGAAGGAGAATCCAACAGCAACACTTGAGGATTTGGAGAAGCCTGGTGTGGATGAAGAGCCTCAGCATGTTCTGCTGCGATATGAAGATGCCTACCAGTATCAGAACATCTTTGGCCCATTGGTCAAACTGGAGGCAGACTATGACAAGAAGCTTAAAGAGTCCCAGACCCAAGACAATATAACTGTCAGGTGGGATTTGGGACTGAATAAAAAGAGGATTGCTTATTTCACCCTTCCCAAGACGGATTCAGGTGACATGCGTCTTATGCAAGGGGATGAGATCTGCCTGCGTTATAAGGGAGATTTGGCTCCTCTCTGGAAGGGGATTGGACATGTCATCAAGGTCCCTGATAACTATGGAGATGAGATTGCTATAGAGCTGAGGAGCAGTGCTGGAGCTCCCGTGGAGGTGCCCCACAACTTCCAGGTGGACTTTGTCTGGAAATCCACTTCCTTTGACCGCATGCAGAGTGCCCTGAAAACATTTGCGGTAGACGAGACCTCAGTGTCTGGTTACATCTATCACAAGTTGCTTGGCCATGAGGTGGAGGATGTGATCATTAAGTGCCAGTTACCCAAGCGCTTCACTGCCCAGGGCCTGCCTGACCTCAACCACTCACAGGTGTATGCTGTGAAAACGGTGCTCCAGCGTCCCCTCAGTCTGATCCAGGGGCCTCCTGGTACTGGCAAAACTGTTACCTCAGCAACTATTGTTTACCATCTGGCTAGACAGGGCAACGGGCCGGTGCTGGTATGTGCTCCCAGCAACATTGCAGTGGACCAGCTGACAGAGAAAATTCACCAAACAGGACTGAAAGTGGTGCGTCTCTGTGCCAAGAGCCGAGAGGCCATTGATTCTCCTGTGTCCTTCCTGGCTCTGCACAACCAGATTCGCAACATGGACAGCATGCCAGAACTGCAAAAGCTGCAGCAGCTGAAGGATGAAACAGGAGAGCTGTCTTCCTCGGATGAGAAGCGCTACAGGGCCCTGAAGCGCACTGCAGAAAGGGAGCTACTCATGAATGCAGATGTGATCTGTTGTACTTGCGTGGGTGCGGGTGATCCTCGTCTGGCTAAAATGCAGTTCCGCTCCATCCTGATAGATGAGAGTACCCAGGCTACTGAGCCAGAGTGCATGGTTCCTGTAGTGCTGGGAGCCAAGCAGCTGATCCTGGTGGGTGATCACTGCCAGCTAGGTCCAGTGGTCATGTGTAAAAAGGCTGCTAAGGCAGGTCTGTCCCAGTCTCTTTTCGAGAGACTGGTGGTGCTGGGCATCAGACCCATCCGTCTACAAGTGCAATACCGTATGCACCCTGCACTCAGCGCTTTCCCCTCCAATATCTTCTATGAAGGATCTCTCCAGAACGGAGTCACTGCTGCTGACCGCATCAAGAAGGGCTTTGATTTCCAGTGGCCTCAGCCAGATAAGCCCATGTTCTTCTATGTGACACAGGGCCAGGAGGAGATTGCCAGCTCAGGCACCTCCTACCTCAACAGGACTGAGGCTGCTAATGTGGAGAAGATCACCACTCGCCTTTTGAAGGCCGGAGCCAAACCTGACCAGATTGGTATAATCACTCCCTACGAGGGCCAGCGCTCCTACCTGGTGCAGTACATGCAGTTCAGCGGTTCCCTTCATACTAAGCTCTACCAGGAGGTGGAGATAGCCAGCGTGGATGCCTTCCAGGGCCGTGAGAAGGACTTCATTATTCTGTCTTGTGTCAGAGCCAATGAGCACCAAGGCATCGGCTTTCTTAATGATCCACGCAGGTTGAACGTTGCCCTCACCAGAGCCAGGTATGGTGTGATCATTGTGGGGAATCCTAAAGCTCTGTCTAAGCAGCCACTCTGGAACCACCTGCTGAACTACTACAAGGAGCAGAAGGTTCTGGTGGAGGGGCCTCTCAACAACCTGAGAGAGAGCCTCATGCAGTTCAGCAAACCTCGCAAGCTCGTTAACACCATCAACCCTGGAGCTCGTTTTATGAGCACTGCCATGTATGATGCCAGGGAGGCCATGATCCCCGGCTCAGTGTATGACCGCAGCAACACTGGTCGTCCATCGAGCATGTATTTCCAAACTCACGACCAGATTGGGATGATTGGTGCAGGGCCGAACCCTATGGCCTCCATGAACATTCCCATACCCTTCAACCTGGTCATGCCCCCCCTGCCCCCACCAGGCTACCTGGGCCAGATTAATGGCCCGGCTACTGGTCGTGGTGCGTCAAAGGGAAAGCCAAGTGGGCGCGGAGGACGGCAGAGGAATCGTGGCGTGGGTAACCATGGCAGCGGGCAGACCAACATGGCAAACAGCCAGGCCAGTCAGGATCTGGTATCTCAGCCCTTCTCTCAGGGTCCCCTGACCCAGGGCTACATTACCATGAGCCAGCCCTCACAGATGAGCCAGCCAGGCCTGTCCCAGCCTGAACTTTCCCAgGACAGTTACCTGGGTGATGAGTTCAAGTCGCAGATGGATGTGGCTCTGTCCCAGGATTCCACTTACCAGGGTGAACGGGCATACCAGCATGGAGGAGTGACCGGACTCTCTCAGTACTAGAGTGTTGTTGGAACGGGAGCTAGGCCTACGCTGAGCTTAGTTCATCAGCATTTTAAATCTgggtaaatataaaaaaagaacaaacatggATGCCCGTTTTCCACTGTTACAACTGAAGCACCATGGTGTGAGAACAACAGGAGAGAATCAAACCAATCACGTGtgaaaaaagagggagaaaagcagGATAAGAAAAGAGGGAACGAAAGAGAGTGGAGGGAGGAAACCACCCCACCACTCGCTAAGGATGggaaggaggagagaggagcAGACGCAGCATAGGAGGAGACGATGTAGGAGGGAAATCAAACCGAGATCTTCGATCTGCAACTCCGCATAGTCGAGGCGCCTCCTGGGGAGCAGGGCAGTCCCTTACCTGCCTCCTCTCTCTCGCCAGGCTGCAGCCGGCAGCCGCAGACCTCGCTCTGCCACCCGAGACGGAGAGAAGACGAAGTTCTCTTAAAACTACCTGCAAAAAAAACGCCACGCTTGCTCTGTCGTCTCCACAAGCTGAAAGATGAGGTGacgtctttaaaaaaatgatcaaataaagatattttttaaaaaaaacactttcaagCAGCTGATTTTGGGGAAAATTTTCCCTTCAAAGTTGGAATCTGACTTTCAGATATTACCACCAAACATCTTTGAGAGGATGGGGAAACATCTCTGGGCGGAGGGTTGTGCTTTtacgcattttttttttttttattttattttttttttttttcttttttttttttgtggtggtggtggtccCATCTTTACAAATGGTGCTAGGAGTCTCTGAAGAAAGATTCAACTTTGAGGAAAGTTTTCTGATTGAAGGTTGTGGAGTAGTGGTTCAGAAATGGAACGGCTCTGAGAGATGTCgcctgctctgggtgtgtgacCAATGGAAAAGATGGGGAGTCTTAACAAATGgctttgtgatattttttaacaaaatggcaaACTGGAAGGGTTGAGAGATTTGAAGTTTATCATTTTTTGCCTcaccattttaaacaaattgttTTGAACCCAGATAAACAATTGCAGCAGAACCTAAATTTAGAGATAGGTCATTAGTGGCTTGTTGATGTCTCTATATGGAAAACATGAAGTCATAGGTCCCCAAGAAAATGAGCCAAAAAGCCAGTGGTCAAGCCACTAAAGTTAACCTGTCGCATACCATACGCTCACAGGACCGCTGGAGATTGAACCCGGGGGGCTAATACAAGTTTGAAAAGAGTTTAGAGAATTATCTCAATCTGTAGGAAGATTAAAGCGCTGCTCTCACGTTCAGCAGCAGTTCTGGCAAGTAGCATATTGGTTATGGTCAGTTCCTCTGGCTTCAGTACCGGCATTAAAATCTTTATGCTTCCACTACAGGCAGTGCTGCAAAAccaagatttattttctaaatcaCTCCACCTATTTAGTAAAATTCATAATAATGCACCACATATCAGATTGAGTTCTTGAGTTAAATTATTCCTATACATGAGTTTGAGCCATGAGTTAAATACAGCCGAAAATCACAAAAGTGGCCGTTTGTTAAAGGGTAAAGGGCAGACAGGTGGGATTCTCGCTGTTTGTGTCCGTTTCCCACAAGCAGACTGAAAGAGGCTGCTGTACTCGTCTCTTGCTTACTTGGATGCCAGTGTGTGCGTAGATGGTAGTGTTCTGCTAAGGAGGTTGTGTATGTGCCTCCATATTAATTGTCTCTCTTGTTTTGTGATtaatagtttgtttgtttttttttcttcccccttGTTGGTTGTTGAAGTTGCTTTTCCCCCTATTTActgtctttattattttaacaccTAATTGCATTGTATTTCATTTCTGTAGTCTAGATATGAATGTGAGGTGTACCACATTATCCACTTCATGATCTAAGACTattcataaaattttttttttttttcgtttctttcttttctaaagCTCTGCTCGTAGAATGCTTTGATGCAGCAACATGTGATGCCTTGTCATTTTCATTAACCCTGGAATGTTCATGCCTTGCAGTTATTCCTTGCCTAGTGGCACAATAGCTTGGCATTACTACCTTTTTAGTCTTGGCtctaaactggaaaaaaaaaacaaaaccaaaaaaaaaaaacctttccctATTGGAGTTACAATTGTTCATTTAAAGCGTTTTGTTGTCTAATGGATTTATAACAAATTGCAAAAAGATTTTGTCATTTCTGACATTCACTGCTTGTGTGCATAGCGCTTTCATGTTATTTATAGTTATTCTCATTGGTAGTATCAAAGCTAAATGTAGGCTATACATCCAAAATTAAACAGGGAACTAAATATCCAGAACATAGCTTCTTCAtgttctcatttttaaaaaatcaattccTCTCCCATGATTTGAATGGGTTCCTTTACTTTGGTGTACTTGGTAAGCAGATACTGCCCATAtcaataataaaagttttttttttcctcttttttgtgTGATATGGCCTAGAGCAACAACAACCTGATAGAGACTGATGAACACCCATTATACGGAGGTTGTTCGGGTGGTTGGATAGACACTGTGTTTACTCACTTGAATGCTAAAACTTCAGTACTCTGATATGGCCATGTCAGACTCTCATACTTAATGACAGCCTGTTGAGATTGCAATCAGAAGAAAATTACAGAGGGGACTAATACTGACAAAATAGATGAAGTACCCTGACCACCCTGAGGGTAGGAAGACTTTAAATTGAATCAAAGGGTATAAAAGACCAGAGATTAAGTTTtctttaatggaaatatttccCCACAGTATGTAATTCTTGTAATGTTACTACAATAAATGTTGCTTTATTTCACTCAAGAAGACTGGTCGTTTGAGTATGTATTGTCTTCGAGTTATTAAATATTCTAGTGAAATGTAAAAATCCTATTTGAAATGAGACCATAATTCTATAAAATTAGACCAATTTTTTGGACTAAGAGTGTAGTATGATTTGAAACATACTGTTGCATTTCTTACATCTGTCACATGGTTTCAGCACTTCTCATTACACTGATTTGATTTAGAAACTCGAAACAAGCATAAGCTAGCTACCACTATTGCCTGTGGTGTACAAAAGATTGTATACCCTTCAAATCCTCAAGACTTTTAATGTGGGTTAGACAATTTTACAGATGTTCGTTTCAAAATGTGTATGTCAAGATATTAATCATGTAATTATTAAACTTatatttctgaatgtgtgtTAAA
>XM_026925271.2
ATGAGCGTAGAGGCGTACGGGCCGAGCTCGCAGACTCTCACCTTCCTGGACACGGAGGAAGCGGAGCTGCTCGGAGCCGACACGCAGGGCTCGGAGTTCGAGTTCACCGACTTCACCCTGCCGAGCCAGACTCAAACACAAGGCCAAACCCAGAGTCAGCTCGACAACCAGGTGAATGGACCTGAGGGAGTTCTGCAGAACGGCGATGATGCTGTGGTGAAAACCAGTCAACTTCTGGCAGAGCTGAATTTcgaagaggatgaagaggacaCCTATTACACCAAGGATCTCCCTGTGCATGCCTGCAGTTACTGTGGTATTCATGATCCTGCCTGTGTGGTGTATTGCAACACCAGCAAGAAGTGGTTCTGCAATGGACGTGGCAACACCTCTGGCAGCCATATTGTCAACCATTTGGTGCGTGCCAAATGTAAGGAGGTGACCCTGCATAAAGATGGTCCTTTGGGGGAAACAGTGTTGGAGTGTTACAACTGTGGCTGTCGCAATGTTTTCCTCCTGGGCTTCATTCCAGCCAAGGCCGATTCTGTCGTGGTGCTCCTGTGCAGgcAGCCATGTGCCAGTCAAAGCAGTCTGAAGGACATTAACTGGGACAGCTCCCAGTGGCAGCCTTTGATCCAGGACCGGTGCTTTCTGTCCTGGCTGGTGAAGATCCCGTCTGAGCAGGAGCAGCTCAGGGCACGCCAGATCACCGCTCAGCAGATCAACAAACTGGAGGAGCTCTGGAAGGAGAATCCAACAGCAACACTTGAGGATTTGGAGAAGCCTGGTGTGGATGAAGAGCCTCAGCATGTTCTGCTGCGATATGAAGATGCCTACCAGTATCAGAACATCTTTGGCCCATTGGTCAAACTGGAGGCAGACTATGACAAGAAGCTTAAAGAGTCCCAGACCCAAGACAATATAACTGTCAGGTGGGATTTGGGACTGAATAAAAAGAGGATTGCTTATTTCACCCTTCCCAAGACGGATTCAGACATGCGTCTTATGCAAGGGGATGAGATCTGCCTGCGTTATAAGGGAGATTTGGCTCCTCTCTGGAAGGGGATTGGACATGTCATCAAGGTCCCTGATAACTATGGAGATGAGATTGCTATAGAGCTGAGGAGCAGTGCTGGAGCTCCCGTGGAGGTGCCCCACAACTTCCAGGTGGACTTTGTCTGGAAATCCACTTCCTTTGACCGCATGCAGAGTGCCCTGAAAACATTTGCGGTAGACGAGACCTCAGTGTCTGGTTACATCTATCACAAGTTGCTTGGCCATGAGGTGGAGGATGTGATCATTAAGTGCCAGTTACCCAAGCGCTTCACTGCCCAGGGCCTGCCTGACCTCAACCACTCACAGGTGTATGCTGTGAAAACGGTGCTCCAGCGTCCCCTCAGTCTGATCCAGGGGCCTCCTGGTACTGGCAAAACTGTTACCTCAGCAACTATTGTTTACCATCTGGCTAGACAGGGCAACGGGCCGGTGCTGGTATGTGCTCCCAGCAACATTGCAGTGGACCAGCTGACAGAGAAAATTCACCAAACAGGACTGAAAGTGGTGCGTCTCTGTGCCAAGAGCCGAGAGGCCATTGATTCTCCTGTGTCCTTCCTGGCTCTGCACAACCAGATTCGCAACATGGACAGCATGCCAGAACTGCAAAAGCTGCAGCAGCTGAAGGATGAAACAGGAGAGCTGTCTTCCTCGGATGAGAAGCGCTACAGGGCCCTGAAGCGCACTGCAGAAAGGGAGCTACTCATGAATGCAGATGTGATCTGTTGTACTTGCGTGGGTGCGGGTGATCCTCGTCTGGCTAAAATGCAGTTCCGCTCCATCCTGATAGATGAGAGTACCCAGGCTACTGAGCCAGAGTGCATGGTTCCTGTAGTGCTGGGAGCCAAGCAGCTGATCCTGGTGGGTGATCACTGCCAGCTAGGTCCAGTGGTCATGTGTAAAAAGGCTGCTAAGGCAGGTCTGTCCCAGTCTCTTTTCGAGAGACTGGTGGTGCTGGGCATCAGACCCATCCGTCTACAAGTGCAATACCGTATGCACCCTGCACTCAGCGCTTTCCCCTCCAATATCTTCTATGAAGGATCTCTCCAGAACGGAGTCACTGCTGCTGACCGCATCAAGAAGGGCTTTGATTTCCAGTGGCCTCAGCCAGATAAGCCCATGTTCTTCTATGTGACACAGGGCCAGGAGGAGATTGCCAGCTCAGGCACCTCCTACCTCAACAGGACTGAGGCTGCTAATGTGGAGAAGATCACCACTCGCCTTTTGAAGGCCGGAGCCAAACCTGACCAGATTGGTATAATCACTCCCTACGAGGGCCAGCGCTCCTACCTGGTGCAGTACATGCAGTTCAGCGGTTCCCTTCATACTAAGCTCTACCAGGAGGTGGAGATAGCCAGCGTGGATGCCTTCCAGGGCCGTGAGAAGGACTTCATTATTCTGTCTTGTGTCAGAGCCAATGAGCACCAAGGCATCGGCTTTCTTAATGATCCACGCAGGTTGAACGTTGCCCTCACCAGAGCCAGGTATGGTGTGATCATTGTGGGGAATCCTAAAGCTCTGTCTAAGCAGCCACTCTGGAACCACCTGCTGAACTACTACAAGGAGCAGAAGGTTCTGGTGGAGGGGCCTCTCAACAACCTGAGAGAGAGCCTCATGCAGTTCAGCAAACCTCGCAAGCTCGTTAACACCATCAACCCTGGAGCTCGTTTTATGAGCACTGCCATGTATGATGCCAGGGAGGCCATGATCCCCGGCTCAGTGTATGACCGCAGCAACACTGGTCGTCCATCGAGCATGTATTTCCAAACTCACGACCAGATTGGGATGATTGGTGCAGGGCCGAACCCTATGGCCTCCATGAACATTCCCATACCCTTCAACCTGGTCATGCCCCCCCTGCCCCCACCAGGCTACCTGGGCCAGATTAATGGCCCGGCTACTGGTCGTGGTGCGTCAAAGGGAAAGCCAAGTGGGCGCGGAGGACGGCAGAGGAATCGTGGCGTGGGTAACCATGGCAGCGGGCAGACCAACATGGCAAACAGCCAGGCCAGTCAGGATCTGGTATCTCAGCCCTTCTCTCAGGGTCCCCTGACCCAGGGCTACATTACCATGAGCCAGCCCTCACAGATGAGCCAGCCAGGCCTGTCCCAGCCTGAACTTTCCCAgGACAGTTACCTGGGTGATGAGTTCAAGTCGCAGATGGATGTGGCTCTGTCCCAGGATTCCACTTACCAGGGTGAACGGGCATACCAGCATGGAGGAGTGACCGGACTCTCTCAGTACTAGAGTGTTGTTGGAACGGGAGCTAGGCCTACGCTGAGCTTAGTTCATCAGCATTTTAAATCTgggtaaatataaaaaaagaacaaacatggATGCCCGTTTTCCACTGTTACAACTGAAGCACCATGGTGTGAGAACAACAGGAGAGAATCAAACCAATCACGTGtgaaaaaagagggagaaaagcagGATAAGAAAAGAGGGAACGAAAGAGAGTGGAGGGAGGAAACCACCCCACCACTCGCTAAGGATGggaaggaggagagaggagcAGACGCAGCATAGGAGGAGACGATGTAGGAGGGAAATCAAACCGAGATCTTCGATCTGCAACTCCGCATAGTCGAGGCGCCTCCTGGGGAGCAGGGCAGTCCCTTACCTGCCTCCTCTCTCTCGCCAGGCTGCAGCCGGCAGCCGCAGACCTCGCTCTGCCACCCGAGACGGAGAGAAGACGAAGTTCTCTTAAAACTACCTGCAAAAAAAACGCCACGCTTGCTCTGTCGTCTCCACAAGCTGAAAGATGAGGTGacgtctttaaaaaaatgatcaaataaagatattttttaaaaaaaacactttcaagCAGCTGATTTTGGGGAAAATTTTCCCTTCAAAGTTGGAATCTGACTTTCAGATATTACCACCAAACATCTTTGAGAGGATGGGGAAACATCTCTGGGCGGAGGGTTGTGCTTTtacgcattttttttttttttattttattttttttttttttcttttttttttttgtggtggtggtggtccCATCTTTACAAATGGTGCTAGGAGTCTCTGAAGAAAGATTCAACTTTGAGGAAAGTTTTCTGATTGAAGGTTGTGGAGTAGTGGTTCAGAAATGGAACGGCTCTGAGAGATGTCgcctgctctgggtgtgtgacCAATGGAAAAGATGGGGAGTCTTAACAAATGgctttgtgatattttttaacaaaatggcaaACTGGAAGGGTTGAGAGATTTGAAGTTTATCATTTTTTGCCTcaccattttaaacaaattgttTTGAACCCAGATAAACAATTGCAGCAGAACCTAAATTTAGAGATAGGTCATTAGTGGCTTGTTGATGTCTCTATATGGAAAACATGAAGTCATAGGTCCCCAAGAAAATGAGCCAAAAAGCCAGTGGTCAAGCCACTAAAGTTAACCTGTCGCATACCATACGCTCACAGGACCGCTGGAGATTGAACCCGGGGGGCTAATACAAGTTTGAAAAGAGTTTAGAGAATTATCTCAATCTGTAGGAAGATTAAAGCGCTGCTCTCACGTTCAGCAGCAGTTCTGGCAAGTAGCATATTGGTTATGGTCAGTTCCTCTGGCTTCAGTACCGGCATTAAAATCTTTATGCTTCCACTACAGGCAGTGCTGCAAAAccaagatttattttctaaatcaCTCCACCTATTTAGTAAAATTCATAATAATGCACCACATATCAGATTGAGTTCTTGAGTTAAATTATTCCTATACATGAGTTTGAGCCATGAGTTAAATACAGCCGAAAATCACAAAAGTGGCCGTTTGTTAAAGGGTAAAGGGCAGACAGGTGGGATTCTCGCTGTTTGTGTCCGTTTCCCACAAGCAGACTGAAAGAGGCTGCTGTACTCGTCTCTTGCTTACTTGGATGCCAGTGTGTGCGTAGATGGTAGTGTTCTGCTAAGGAGGTTGTGTATGTGCCTCCATATTAATTGTCTCTCTTGTTTTGTGATtaatagtttgtttgtttttttttcttcccccttGTTGGTTGTTGAAGTTGCTTTTCCCCCTATTTActgtctttattattttaacaccTAATTGCATTGTATTTCATTTCTGTAGTCTAGATATGAATGTGAGGTGTACCACATTATCCACTTCATGATCTAAGACTattcataaaattttttttttttttcgtttctttcttttctaaagCTCTGCTCGTAGAATGCTTTGATGCAGCAACATGTGATGCCTTGTCATTTTCATTAACCCTGGAATGTTCATGCCTTGCAGTTATTCCTTGCCTAGTGGCACAATAGCTTGGCATTACTACCTTTTTAGTCTTGGCtctaaactggaaaaaaaaaacaaaaccaaaaaaaaaaaacctttccctATTGGAGTTACAATTGTTCATTTAAAGCGTTTTGTTGTCTAATGGATTTATAACAAATTGCAAAAAGATTTTGTCATTTCTGACATTCACTGCTTGTGTGCATAGCGCTTTCATGTTATTTATAGTTATTCTCATTGGTAGTATCAAAGCTAAATGTAGGCTATACATCCAAAATTAAACAGGGAACTAAATATCCAGAACATAGCTTCTTCAtgttctcatttttaaaaaatcaattccTCTCCCATGATTTGAATGGGTTCCTTTACTTTGGTGTACTTGGTAAGCAGATACTGCCCATAtcaataataaaagttttttttttcctcttttttgtgTGATATGGCCTAGAGCAACAACAACCTGATAGAGACTGATGAACACCCATTATACGGAGGTTGTTCGGGTGGTTGGATAGACACTGTGTTTACTCACTTGAATGCTAAAACTTCAGTACTCTGATATGGCCATGTCAGACTCTCATACTTAATGACAGCCTGTTGAGATTGCAATCAGAAGAAAATTACAGAGGGGACTAATACTGACAAAATAGATGAAGTACCCTGACCACCCTGAGGGTAGGAAGACTTTAAATTGAATCAAAGGGTATAAAAGACCAGAGATTAAGTTTtctttaatggaaatatttccCCACAGTATGTAATTCTTGTAATGTTACTACAATAAATGTTGCTTTATTTCACTCAAGAAGACTGGTCGTTTGAGTATGTATTGTCTTCGAGTTATTAAATATTCTAGTGAAATGTAAAAATCCTATTTGAAATGAGACCATAATTCTATAAAATTAGACCAATTTTTTGGACTAAGAGTGTAGTATGATTTGAAACATACTGTTGCATTTCTTACATCTGTCACATGGTTTCAGCACTTCTCATTACACTGATTTGATTTAGAAACTCGAAACAAGCATAAGCTAGCTACCACTATTGCCTGTGGTGTACAAAAGATTGTATACCCTTCAAATCCTCAAGACTTTTAATGTGGGTTAGACAATTTTACAGATGTTCGTTTCAAAATGTGTATGTCAAGATATTAATCATGTAATTATTAAACTTatatttctgaatgtgtgtTAAA

Function

symbol description
upf1 Predicted to enable RNA binding activity and RNA helicase activity. Involved in nuclear-transcribed mRNA catabolic process. Acts upstream of or within chordate embryonic development and nuclear-transcribed mRNA catabolic process, nonsense-mediated decay. Predicted to be active in cytoplasm. Orthologous to human UPF1 (UPF1 RNA helicase and ATPase).

NR:

description
regulator of nonsense transcripts 1

GO:

id name namespace
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0009790 embryo development biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K14326 UPF1, RENT1; regulator of nonsense transcripts 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925268.2 True 6733 mRNA 0.46 24 16071106 16088518
XM_026925271.2 False 6520 mRNA 0.46 24 16071106 16088308

Neighbor

gene id symbol gene type direction distance location
LOC113533416 homer3,LOC108280570,LOC108427175,LOC107696283 coding downstream 2545 16041828 ~ 16068561 (-)
polr2ea polr2e,polr2eb,LOC107669821,LOC107599482 coding downstream 142039 15924221 ~ 15929067 (-)
zgc:85843 tm6sf2 coding downstream 209624 15854503 ~ 15861482 (-)
LOC113533480 LOC108280289,LOC108427160,LOC107724981,LOC108239455,LOC106526424,LOC106923029 coding downstream 422362 15594435 ~ 15648744 (-)
onecut3b onecut3,LOC107724988,LOC107549809,LOC105906914,LOC107696512,LOC107552684,LOC105011560 coding downstream 581846 15463616 ~ 15489260 (-)
pgpep1 pgpep1,LOC107596298,LOC107552686,LOC107660389,LOC107696873 coding upstream 2006 16090524 ~ 16094854 (-)
LOC113533206 loxl5b,LOC108280695,LOC108427108 coding upstream 40183 16128701 ~ 16131801 (-)
LOC117599986 LOC108280695 coding upstream 43051 16131569 ~ 16132462 (-)
nmrk2 LOC108280697,LOC108427183,LOC107750947,LOC103029326,LOC107552712,LOC107696854,LOC107687917,LOC107723974 coding upstream 52246 16140764 ~ 16143363 (-)
atcayb atcay,LOC108280696,LOC108427182,LOC105906996,LOC105906923 coding upstream 59345 16147863 ~ 16160217 (-)
G321347 NA non-coding downstream 21463 16049442 ~ 16049643 (-)
G321330 NA non-coding downstream 29365 16040881 ~ 16041741 (-)
LOC117595737 NA non-coding downstream 243762 15811353 ~ 15827344 (-)
G321032 NA non-coding downstream 478490 15592160 ~ 15592616 (-)
G320897 NA non-coding downstream 610690 15380135 ~ 15460416 (-)
G321349 NA non-coding upstream 10350 16098868 ~ 16099238 (-)
G321354 calr3b,LOC107750920,LOC107696693,LOC108280796,LOC107552714 non-coding upstream 99458 16187976 ~ 16223314 (-)
G321465 NA non-coding upstream 285992 16374510 ~ 16375343 (-)
G321468 NA non-coding upstream 305690 16394208 ~ 16456123 (-)
LOC117595731 NA non-coding upstream 306235 16394753 ~ 16395539 (-)
LOC113533563 NA other downstream 346750 15687082 ~ 15724356 (-)
LOC113533479 LOC108280451 other downstream 839526 15222778 ~ 15231580 (-)
theg NA other downstream 1325619 14731734 ~ 14745487 (-)
LOC113533556 LOC108280202 other downstream 2390996 13665181 ~ 13680110 (-)
ccl25a NA other downstream 2455363 13612516 ~ 13615743 (-)
G321462 NA other upstream 269056 16357574 ~ 16367004 (-)
stk11 stk11 other upstream 476190 16564708 ~ 16587816 (-)
trnal-uaa_3 NA other upstream 885009 16973527 ~ 16973770 (-)
G322080 NA other upstream 1411547 17500065 ~ 17500832 (-)
LOC113546399 LOC108280496,LOC108430154 other upstream 1765329 17853847 ~ 17872108 (-)

Expression


Co-expression Network