polr2ea (polr2e,polr2eb,LOC107669821,LOC107599482)


Basic Information

Item Value
gene id polr2ea
gene name polr2e,polr2eb,LOC107669821,LOC107599482
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15924221 ~ 15929067 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925307.2
GGGTCCTAATGTTGGTGACGTCACTTACCGGAAGTGATTTTCAGTCGTGTGTTTCGTTTGAAACGGTAGATAATTATCTAGCGCTGTAAAACATACGCATATTAAGAGTTAAAGGACTTGTGTGATAatagttaattatttaaagcatCATGGATGATGAAGAGGAGACTTACCGCCTGTGGAAAATCCGGAAGACGATAATGCAGCTCTGCCACGATCGAGGATACTTGGTGACGCAGGATGAGTTGGATCAGACGCTGGATGAGTTTAAAAGTCAGTTTGGGGACAAGCCGAGCGAGGGCCGTCCTCGGAGGACAGATCTCACAGTGCTCGTGGCTCACAACGACGATCCCACTGACCAGATGTTTGTCTTCTTCCCAGAGGAGCCCAAGGTGGGAATTAAAACCATCAAAATGTACTGCCAGCGCATGCAGGAGGAGAACATCACCCGCGCCATTATTGTGGTCCAGATGGGCATGACACCTTCTGCTAAACAGTCGCTGGTGGACATGGCACCGAAGTACATCCTGGAGCAGTTTCTCCAGCAAGAGCTGCTCATCAACATCACAGAGCACGAGCTGGTCCCTGAGCACATTGTGATGACGAAGGAAGAAGTGACAGAGCTGCTAGCGAGATATAAGCTGAAGGAGAGCCAGTTACCCAGGATTCAAGCCGGAGACCCGGTGGCTCGATATTTCGGGCTGAAAAGAGGCCAGGTGGTGAAGATCATCCGGCCGAGTGAGACTGCAGGTCGTTATATAACCTACAGACTTGTACAGTGAAGCTGCAGTGgtTATCCATTAGGAGCTGATATTCTTCAAGCTGGAGGTGATGAGGTGTGTTTCTGTGACCTTTAGTCTCAGTTACAGTGGGTGCAACTCAGTAACAGATTGAACTACTACATAATTGTAGTTGTATCAGAAAGGAAAGTTTTGGGACAGTTgtatattcatttcatttaaaactaaattGTAGTTGTAACAATTGCTGAATTTTGTAATAAAGTGTCTTAaaatttttgttga

Function

symbol description
polr2eb Predicted to enable DNA binding activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase I complex; RNA polymerase II, core complex; and RNA polymerase III complex. Orthologous to human POLR2E (RNA polymerase II, I and III subunit E).
polr2e Predicted to enable DNA binding activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Involved in transcription by RNA polymerase II. Located in nucleoplasm. Part of RNA polymerase II, core complex.

NR:

description
PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC1-like

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005665 RNA polymerase II, core complex cellular_component
GO:0005666 RNA polymerase III complex cellular_component
GO:0005736 RNA polymerase I complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0001054 RNA polymerase I activity molecular_function
GO:0001055 RNA polymerase II activity molecular_function
GO:0001056 RNA polymerase III activity molecular_function

KEGG:

id description
K03013 RPB5, POLR2E; DNA-directed RNA polymerases I, II, and III subunit RPABC1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925307.2 True 1025 mRNA 0.46 8 15924221 15929067

Neighbor

gene id symbol gene type direction distance location
zgc:85843 tm6sf2 coding downstream 62739 15854503 ~ 15861482 (-)
LOC113533480 LOC108280289,LOC108427160,LOC107724981,LOC108239455,LOC106526424,LOC106923029 coding downstream 275477 15594435 ~ 15648744 (-)
onecut3b onecut3,LOC107724988,LOC107549809,LOC105906914,LOC107696512,LOC107552684,LOC105011560 coding downstream 434961 15463616 ~ 15489260 (-)
LOC113533539 LOC108280326 coding downstream 574715 15338737 ~ 15349506 (-)
plekhj1 plekhj1,LOC107696566,LOC107750216,LOC107671816 coding downstream 591560 15329012 ~ 15332661 (-)
LOC113533416 homer3,LOC108280570,LOC108427175,LOC107696283 coding upstream 112761 16041828 ~ 16068561 (-)
upf1 upf1,LOC107660376,LOC107724030,LOC105907049,LOC107696277 coding upstream 142039 16071106 ~ 16088518 (-)
pgpep1 pgpep1,LOC107596298,LOC107552686,LOC107660389,LOC107696873 coding upstream 161457 16090524 ~ 16094854 (-)
LOC113533206 loxl5b,LOC108280695,LOC108427108 coding upstream 199634 16128701 ~ 16131801 (-)
LOC117599986 LOC108280695 coding upstream 202502 16131569 ~ 16132462 (-)
LOC117595737 NA non-coding downstream 96877 15811353 ~ 15827344 (-)
G321032 NA non-coding downstream 331605 15592160 ~ 15592616 (-)
G320897 NA non-coding downstream 463805 15380135 ~ 15460416 (-)
G320880 NA non-coding downstream 620196 15303811 ~ 15304025 (-)
G320871 NA non-coding downstream 637344 15286084 ~ 15286877 (-)
G321330 NA non-coding upstream 111814 16040881 ~ 16041741 (-)
G321347 NA non-coding upstream 120375 16049442 ~ 16049643 (-)
G321349 NA non-coding upstream 169801 16098868 ~ 16099238 (-)
G321354 calr3b,LOC107750920,LOC107696693,LOC108280796,LOC107552714 non-coding upstream 258909 16187976 ~ 16223314 (-)
G321465 NA non-coding upstream 445443 16374510 ~ 16375343 (-)
LOC113533563 NA other downstream 199865 15687082 ~ 15724356 (-)
LOC113533479 LOC108280451 other downstream 692641 15222778 ~ 15231580 (-)
theg NA other downstream 1178734 14731734 ~ 14745487 (-)
LOC113533556 LOC108280202 other downstream 2244111 13665181 ~ 13680110 (-)
ccl25a NA other downstream 2308478 13612516 ~ 13615743 (-)
G321462 NA other upstream 428507 16357574 ~ 16367004 (-)
stk11 stk11 other upstream 635641 16564708 ~ 16587816 (-)
trnal-uaa_3 NA other upstream 1044460 16973527 ~ 16973770 (-)
G322080 NA other upstream 1570998 17500065 ~ 17500832 (-)
LOC113546399 LOC108280496,LOC108430154 other upstream 1924780 17853847 ~ 17872108 (-)

Expression


Co-expression Network