tgm1l1 (LOC108280800)



Basic Information


Item Value
gene id tgm1l1
gene name LOC108280800
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16683656 ~ 16706323 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_026925337.2
TCCGATAAGACAGCCTTCATGTCTTGTCACAAGTGGGCGTGTGTAgcttacatgtgtgtgtgtttaaagttcAACAGAGAGACCAGACTTCAGAGTATATAATCTCACGCGCTTCTAACTTTTACAAACTCAAACTAACGGAAACGCGCGGAGGAGAAACACGCATCAGAGTGCGGGAGTGCTGGAGTGCGGAATATCAGGATCCAGGATGTCAGTCAGAGATGGTTCAGCCGTCGGCCGCTTCCACGGCGCTGCTGCAAGCAATGGCCAAGCAATCCCTGAGAAGGAGGTGGTTACTAGAGAAACGAGGCAGGAGGGAGGCTGTCATCGCTGGTTACGGAAAGCTTACCCCTGTTGCTATCGCCGACAGAGCAGCTCCTATGATGTTACAAATGAACTGGACACAGTGGTCAAGGATGAAGAGAAAGTGACATCCCCCAAGCCTCCTCAACCTCACACAGGAGACAACGAGCTGGAGGagCTGTCTCTGGTTGTACACTCCGTAGACCTGCTCAGCTCAAAGACTAGCCAGAATCGTAAGGAGCACCACACCGAGCAGTACTACGGCAACGAGCTCATCATCCGCCGAGGCCAGACCTTTCAGATTATGCTCGACCTCTCCCGCCCTTTCAATATTAACACAGACAAGCTGCATCTGGAGCTGAAGACAGGCCCGCTGCCTCTGGTGTCGAAGGGCACGCACATCATCATTCCGCTTGTGGAGGAGCTGCAGGACCTGTGCTGGGAAGCCAAGGTTGTGGAGCAGAATGCCAGTCACGTCAAGCTGTCAATCAACTCACCCCCCAATGCTGTCATTGGAAAATACAAGCTCACAGTCGGCACTGGGAGTACAGAAAGCGAGTCTGTTAATATACATGACCCCGAGAAAGACGTCTACATACTCTTTAACCCCTGGTGTGAAGGGGACACAGTATATATGGATGAAGTTGCTGAGAGAAAGGAGTATGTGTTGAATGACACTGGGAAAATTTACTACGGCACTGAGAGGCAGATCGGTGCTCGCACGTGGAACTTTGGACAGTTTCAGGAAGGGATTCTGGAGGCCTGTTTGTATGTGCTGGAGAAGAGCGAAATTCTTCCATCAGGTCGTGGAGATCCAGTGAATGTTGTGCGAGTCATATCCGCTATGATCAATTCCCCGGATGACCGCGGAGTTCTGGAAGGAAACTGGTCGGGGAACTATCTGGGCGGGACACCTCCTACAGCATGGAGCGGCAGCGTGGACATTCTCAAGAAGTATCACAACGAAGATGGATCTCCTGTCAAATACGGCCAGTGCTGGGTCTTCTCCGGGGTCACCACCACAGttctGAGGTGTCTTGGTATCCCAACTCGGAGCGTAACAAATTTCCAGTCTGCCCACGACACTGATGTCTCCTTGACCACTGATGTGTATTTTGATGAGAATATGGAGCCAGTTAACAAACTCAACTATGATTCTGTGTGGAACTTCCACGTGTGGAACGACTGCTGGATGGCTCGTCCTGATTTGCCGCCCGGTATGGGTGGCTGGCAGGCTGTTGACTCGACGCCCCAGGAAACCAGTCAGGGGACGTTCCGCTGTGGCCCCGCCTCCGTCGCGGCCATCCGCATGGGCCAGGTCTACTTGAAGCACGACACACCTTTTGTCTTTGCTGAGGTGAACAGCGATAAGATCTACTGGCAGAGGAAGCCGGATGGCAGTTTCTCTAAGATTCACATAGAGAAGAATGCCGTAGGACACTGCATTAGCACCAAGGCTGTTGGCTCTGACCAGCGCAATGACATCACACACCTGTACAAACATCCTGAAGGCTCTGAAGAAGAGCGTATCGCTGTGGAGACTGCCTGTCGCTATGGCACCAAGCCAGACGTGTACGCATCATCAGCGATTGATGACGTGTCTATGGAGGTGCGGGTGGAAGGTGAGGGGCCATGCATGGGCGCAGATGCCCACCTCAAGATCGTTTTGAAGAACCAGAGTGGGCAGCCACGCAAGACCACGCTGCACAGCCAGGTGGCCGTGATGTACTACACAGGTGTGGTGAAGGACACTGTGAAGACCGAGAAAATTCCTGTGCATCTCATGGCAAATGAAGAAAAAGTTATAGACTGGGTGCTGCCCTACCATGATTATCAGGACCAGCTGGTGGACCAGGCGGCGCTGATGCTCACTCTGTCTGGTCGAGTTAATGAAACCATGCAGGTGCTGGCTTCTCAGACCAGCTTCAGACTGCGCACTCCAGACATCCACATTGAGCCTCTCGGAGAGACCTACGTAGGGAAGGAGGCCACGGCCAAGCTGACTTTCACCAACCCGTTACCGTGCACCCTGCGCAGTGTAGTACTGCGAGTGGAAGGTCTCGGACTTAGGAACCTCCATCCCATCAAAGTGGGCGATGTGAGTAAGCATGCTACGGTGACGGTGACGGAGCACTTCATCCCCTCTGTCGCCGGGACGAAGAAGCTGGTGGCTTCACTGGACTGTAAACAGCTCTCGCAGGTGCACGGCGTCGCCGACATCATCGTAAACGAGTGACAGTGaacacaccatcatcagtgtACAATCTTCTTcgtacacttaaaaaaaaacatactgtagtgtccaTATGAGTGTGAATGCTCACCTGTATTGCTTGCAAAGAACAGATCTGAATTCTTTATAAACATGAGCCTAATACTTCTTCAGATCTCAGATCTGTTTGTATTGTTTCCTTTAGTTTCAGTTACTGAGCCATATTAGACTAGTAATACTGAGGCTGTGCTGCTGCTGAACATAGAATTAATTTCAGATGAATAATCTGACCTCTGATCTCTGATTATTATGAagaatttttagaattttattatttttttaacatgcatgcttaaaacaatttaaatggctacactgtaacacattaTTATGGTTTTATAATATAACATatgaataatttgcatatttaatatcaacagtctttatacagtatatatatccCTTCTCTGTATTAAAAACTGTTCATGAGAAAACCAGTATTAATATGATCTGTATTCATTAAGACTAGTTAATTAAGACTAGACTTAACAgctgcatatttatttaaaccttcCATTATAGATAAATCCTATTAATGTAGCTCTTGCATTATTTATCATGCACTTTTTTTCAAACAcatgttgtattttattgttattaaattgACTTATACTA

Function


NR:

description
protein-glutamine gamma-glutamyltransferase K-like

GO:

id name namespace
GO:0018149 peptide cross-linking biological_process
GO:0046872 metal ion binding molecular_function
GO:0003810 protein-glutamine gamma-glutamyltransferase activity molecular_function

KEGG:

id description
K05619 TGM1; transglutaminase 1

RNA


RNA id representative length rna type GC content exon number start site end site
XM_026925337.2 True 3190 mRNA 0.48 14 16683656 16706323

Neighbor


gene id symbol gene type direction distance location
LOC113533121 kcnj10,LOC108280182 coding upstream 54184 16620683 ~ 16629472 (+)
LOC113533302 LOC108280185,LOC108427202 coding upstream 118635 16542334 ~ 16565021 (+)
LOC113533391 LOC108280648,LOC108427199 coding upstream 215290 16460810 ~ 16468366 (+)
ndufa13 ndufa13,LOC102786334 coding upstream 223276 16457677 ~ 16460380 (+)
LOC113533360 LOC108280712,LOC108427196 coding upstream 227670 16425377 ~ 16455986 (+)
LOC113533288 dad1,LOC103040403,LOC107687594,LOC107726313 coding downstream 8076 16714399 ~ 16717207 (+)
LOC113533485 LOC108280611,LOC108261562,LOC108280616,LOC108261605 coding downstream 12493 16718816 ~ 16740603 (+)
LOC117599971 LOC108280611 coding downstream 43860 16750183 ~ 16755500 (+)
LOC117599974 LOC108261605 coding downstream 92463 16798786 ~ 16805263 (+)
LOC117599976 LOC108280611,LOC108280616,LOC108261605 coding downstream 114412 16820735 ~ 16824608 (+)
G321454 NA non-coding upstream 83063 16594197 ~ 16600593 (+)
G321435 NA non-coding upstream 226488 16456443 ~ 16457168 (+)
G321434 NA non-coding upstream 237532 16436199 ~ 16446124 (+)
G321429 NA non-coding upstream 297133 16386257 ~ 16386523 (+)
trnag-gcc_20 NA non-coding upstream 496615 16186971 ~ 16187041 (+)
G321584 NA non-coding downstream 39453 16745776 ~ 16755230 (+)
G321582 NA non-coding downstream 43837 16750160 ~ 16792097 (+)
G321589 NA non-coding downstream 53519 16759842 ~ 16772449 (+)
G321585 NA non-coding downstream 82863 16789186 ~ 16789607 (+)
G321591 NA non-coding downstream 86391 16792714 ~ 16859578 (+)
G321257 LOC108280695 other upstream 551292 16131335 ~ 16132364 (+)
si:ch211-178n15.1 LOC108280694 other upstream 563623 16112035 ~ 16120033 (+)
jund jund,LOC108280549 other upstream 572567 16100533 ~ 16111089 (+)
gpx4b gpx4b,gpx4,LOC107552704,LOC107723219,LOC103364371,LOC102207447 other upstream 746883 15929947 ~ 15936773 (+)
G321088 NA other upstream 812661 15869016 ~ 15870995 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other downstream 36482 16742805 ~ 16748340 (+)
LOC117599973 LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616 other downstream 50308 16756631 ~ 16788968 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other downstream 85079 16791402 ~ 16793698 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other downstream 132445 16838768 ~ 16859682 (+)
fuz fuz other downstream 772511 17478834 ~ 17483677 (+)

Expression



Co-expression Network