acsl3b (acsl3b,LOC108280780,LOC108439858,LOC107738798,LOC107745612,LOC107567703,LOC107660143,LOC107552494,LOC105907082)


Basic Information

Item Value
gene id acsl3b
gene name acsl3b,LOC108280780,LOC108439858,LOC107738798,LOC107745612,LOC107567703,LOC107660143,LOC107552494,LOC105907082
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 11549783 ~ 11572390 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925340.2
GGCAGCACTTCCGGGCTGATGAGGGCCGCACCGGCGATAGACACTGAAAACCGCCAGATAGCTGTAGTGTTTACGGCGTTCCAACTACAGCTGCTGGTTTCTCTGTTTTGCGTAATGGTTTTCTTACAAAGTCCCCGGTAACCGGTTTGTTATTTTGgttttgtgtcttttgttttctcacACGGGGATAACGTTGTCTGAGGAATAAGGCGGTCCTTGTTTACAAGAAGATTCACCACGTCATCTAAGAAATAACTGACATAGTGAAGAGGAAGCAAGTTGTCCTGTCCGCTGGTGCATTCATCAAAGAAGAAGAGGCATAATTATagcttgaataataataataataataataagaggagGGGACTTCATCTCCAACAGCAAAAAAAGCAAGAGAGGAATATTTTTACAAGCGGCAAAGAAAGGAAGAGCGGGAGAAAAAGGAGTAAAGGACAAGAGACGAGGTGACATAGCACACAAAAACAGATCCACATACTCAGACTGATAGagactgtctcactcactcctccATCAGGATGAAGCTGAAGGAGGATGTGCCTCCTCTTTTCCTGCACGTCTTTCGCTCTGTGGTTTGGGTCTATTCCTTCATCACCTTCATACCCTGGTACTTCCTGTCCGGAGCAGGGGCCAACCAGACCCGAGCCAAACGCATCAAAGCACGCTCAGTTACCAGGAATCCAGCAGGGCCTTACCGGGCCATCAACAGCCAGAAGCAGCTTGTTTCAGAGCTCCATGATGGAGTGGGAACTCTGGATAAAGTGTTTGAGTATGCAGTGAAACGCTTTCCTCAGCGAGACTGTCTCGGTACTCGAGAGGTGCTCAGTGAGGGAGATGAAGTGCAACCCAATGGCAAGGTCTTCAAGAAGgtGATATTGGGTGATTATAACTGGCTGTCATATGAGGAAACCTTTCAGCTGGTCCAGAGGTTCGGGAGTGGCCTGGCTGCCCTGGGTCAGAAACCTCACTGTAACATTGCTATCTTCTGTGAGACTCGTGCCGAATGGATCATAGCAGCACAGGCCTGCTTCATGTACAACTTCCCATTGGTGACTCTATACTCTACTCTGGGAGGGGCAGCAATAGCCCATGGTCTTAATGAGACAGAGGtcacacacatcatcaccaGTAAAGATCTGCTGCAGAGTCGCCTCAAGGAAATTCTGCTGGACGTCCCGAGGCTGCAGCATATTATCATTGTGGACCAGAAGCCCACCAGCTGGCCTGGCCTACCCAGAGGCATTCTGGTCCACAGCATGTCCTCAGTGCAGGAACTGGGAGCAAAATCTGAGAGCATGATGGCGCAGCGGAGTAAGCCCCTTCCCCAAGATATCGCTGTGATCATGTACACTAGCGGTTCCACAGGCATCCCCAAAGGAGTCATGATCTCTCACAGAAACATCATTGCCGGGGTAGCTGGCATGGCAGAACGTATTCCGAACCTGGATGAGAATGACACCTATATTGGCTACTTGCCGCTGGCGCACGTGTTGGAGCTCAGTGCTGAGCTGGTGAGTGTTTCTCATGGCTGCCGCATCGGATACTCCTCACCGCAGACCCTCTCTGATCAGTcaaccaaaattaaaaaaggcaGTAAAGGAGATGCCAGTGTCCTGAAGCCAACGCTAATGGCAGCTGTTCCgGAGATCATGGACCGTATCTATAAGAATGTAATGACTAAGGTGGATGAGATGAGCAGAGTGCAGAGGACTCTCTTTGTGCTGGCCTACAACTACAAGATGGAGCAGATCACTAAAGGATATAGCACTCCACTATGTGACCGTCTGGTTTTCAGGAAAGTGCGTTCATTGCTGGGTGGGAATACGCGAGTGTTGCTGTCAGGAGGAGCTCCTCTGTCTGCAGCTACTCAGCGCTTTATGAACATCTGTTTCTGCTGCCCAGTGGGACAGGGCTACGGCCTAACAGAGACCTGCGGAGCGGGGACCATTAGCGAGCtatatgACTACAGTACGGGCCGTGTTGGAGCACCTCTGGTGTGTTCTGAGATCATGCTTAAGGACTGGGAGGAAGGCGGATACTATAGTACTGACAAGCCCATTCCTCGAGGGGAAATTTTGATTGGTGGACCAAATGTTACTATGGGTTACTATAAGAATGAGGAAAAGAACAGGGAAGACTTTTTCGTGGACAAAAATGGACAGCGCTGGTTCTGCACAGGAGACATTGGCGAGTTCCACGCTGACGGTTGTCTTAAGATCATTGATCGTAAAAAGGACCTGGTGAAACTACAGGCAGGAGAGTATGTGTCTTTGGGAAAAGTGGAAGCTGCGCTGAAAAACTGCCCCCTCATCGACAACATATGTGCTTATGCCAACAGCGAGGAGTCATATGTGATTGGCTTTGTGGTGCCCAATCAGAAGCAGCTGCTGGCTCTTGCCAAGCAGAAGCAAGTGCGAGGGACATGGGAGGAAATTTGTAACCACCCTGATATGGAGAAGGAGGTGCTGCGCATCATTACGGAAGCTGCGGTAACTGCCAAACTGGAGCGCTTTGAGATCCCCAAGAAGATCCGTCTGAGTGCCGAGCCGTGGACTCCGGAGACAGGCCTGGTTACTGATGCCTTCAAACTCAAACGCAAGGAGCTCAAAAGCCACTACCAGGAAGACATTGAGAGGATGTATGGTGGCAAGTAAAAGAAGACAGGGTCAAACAGTAGCAAGAATTGCGATAATTCGAAGGACTTAGGATGTACTATGACCAGAAAGCCTATATAATATGCATTCCTACTTCTTTTGGATAAACCCCTTAGATCATATACATGAACATTTAAATTATTCTAAGGTATTGGctgaccaaaacaaaaacaacaaagatTGTAAAATGGTCAACAGGCAAGTAAAAGTGTCTAATCAGTAACaataaagcaatttttttttgaccagCGTTCTTCTAGTGGACTTCTAGAAGACATACGTTTGTATTATAGACTGAAGAGATACCAGGATCTGGTATTTTCAGGAATTAATGACTTCACTTTGAATCTCAGACGATGAAATGGATGGACCAGCTCCATTTATCAACCAGAAAAAATGCACAGGAATTGTACAGAGTAAGAGCGATCTGTTGGATTTCATATAAATGAAGTCATAAGACTTGTGAATTCATTCCAGTCTGCTGTAGTGAGGCTGTGTTGATTTGACAGGAACAAGGTAGCATTATCTGTGCAGGGAAAAATCTTATaaactgtttgtttggtttttttgtgttgGTTCTGTTCATTTCTATTTGGTAATTATCTGGCATGTGTGAAATGAAGCCTGGAGAGATTTCAGTGTGAAGGTCACTATTATATCATATTCCATACATGTGCTCTTTTTATCAAAGCACTCCTTgatatttttgatttgttttgtttcctcACACTTTTCCTTGGtcatttctgttttacttttaaCCCAGAGTGTGTTACAAAGAATTACTGGTACTCTGGGATAAAGCAGTCATGACGATAGCGTTAATAATATACTCTATTCTGCTCCTTGTACATAGTGCATTTTTGgctttcatactttttaataGATTATTTGAAGCTCTCTACCCATATTACTACTCCAGTGGATTATCTTTAAGGAAGACTTTAGCTAACAATACCAATTTGACCAACTGTAAGTGGAATCTAGTGCGGCATGAAACTCAGCACTTATGGCATATTCTACAGAAAGTGGGCATGTTTGAGTATGctgtaaacaaagcaaaataacaaaattccatgaggttttttttttattaattgctCACTATAatagaaactaaaataaataactgtataaGCAATCAGTGTTTTTAGATTTGTTATCTTTCAGTtagaattattttgttttagaaaACACTTCGACAGTGGACAGAAAACAATCCCACGATACCGAAAACAATGCTTTATCCCAGTTGTGAACGTAACATGTTTGTCTGTCCACCTGCGTAACGTAACGTTAGCAACACCCCTGGCTGTTCATCAAAAGATTCACTAATACTGGATCACAGGAATTTTAACTCGTTGACCACCTTGTTCCTGTTATCTGGGAAGGATTTTGGATTGTTAGTTAATCCGGGCTTAAGGAACCCCACTGTAAGGCGAACATTAATTCTGTCCGTGATGGAGGAGTAACGCTCACGAAGTTTACACTGCAAGAGCCACTTTTATTATGATTTGGAAGTGACCCCATTGTAGAAAATCATGTGTGTTAGGGATTGTTTGACCTTGATCTCAACAGCTGCAAGTGAATAATTTGCATAAGTTTTTCACAATATTAGTTAAAATATATTCTGTCTACTGAAGTAATGATTGCTTCAAATAACGTATGCATCATTCGAGAAGAGAAATAAGGAATCTACACGTTCTTTGTGGTAAAATAAGTGTTAAAATGAGGCATGGCCATGGACTGCGTGAGTAGATGAATTGAAGAAGTGTTGTGTACACACAGGGAATAGTGAGATTTCCTGTGCGAACATTACCGATAGGCCGAATTCTTCTATGCGAGCGCTATGAAAggacagattttaaaaaacaaaacaaaaacacatataaACCCCTTTATTGACCAAATTATGATTGGGCCGGGTCTGAAATTTGATGTGAACAccgtttaaaaaaataacaaacagaaataatagaTTGCTTTGAGATTTGAATAGATGGGATCATTTCTGCCCAATTTCTGTAGAATATGCCTCAGGCTAATAGTTGGATATCATGTTCCTGATTTGTCGTGCGTTCAACAGCCTTCTGTTTGCTGTTGCTGACACTGTTAGTCACACTGGTGTTTAGGCTAAACCTGAACTTTAAAGATGGTGTTAACTGTTCTGTTCCACTTATTGGTACTATTCCAGAAGAGAAACTTAAACAATgcatcatgaataaataaaccagcAAGCTAACTCTTCACTCCACCTAAGAAAGGGGGGTGTGTGTACATAATGTGTCaggatgtatgtgtgttttatatctcctcctcatcctccaaaCTGGTCAGGCATTTGAATTaacgcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgccccTCTCTGATGTTTAGTCATCTCTGATTATTTACCTGTTTGGATTCCGCTAAAATCTGTTTCATAGGATTTGTGAGAAGCAGGcagggaatatatatataaagctttaCATTTGTGCATATATCATATGCCTTTGGTCCATACTCCTTTAACAGTTAGATGAATGTTTACATGAGACCAGTATGTGCAGCAGGTTCATGCCTTTGCCGAGACATTTAAAAGGCTTTGTTTAAACCATTAGACATTTATATTGAATTCTTATATCTTGATATTGTCATGGATCTAGTTGGTAGTGTtgaataaaagtataaaataaatgtgcaataaatatttttcattatttccttATATACCCTTAAATGCACATTGCTGACCACAAGAGCATGAGTCTATTCAggcttttttccacaaaaaagcCATTTCAGTGGAGTTCAATGATGACATTTCATGATTCAGAACACAACAGTAATAGAGACAGACCatgatacaaacattttcatttggatgagaggatatttttttttattattctataaTGGTTTCTATGACAGcatgattaaatatgatattttgggATTTAGGTTATACTAGTTCTCTGAAATTAGGTAAGATTTGGCTATATTTTCCTGTCATAATAGTAGTTCTATTTGTCAAAGGTGAACTTTTAAACATTGTCAGTGCCCCCTAAAACCTGTGTACTGAAATGCTCTGAAAACAATAGTTTAACCCAAGTAAGTGTCTTGTATCTATTATCTGCCTTATCATAAGTAATTCATGGAAATTGTTAGCTGGTTGTCCTCAAGCTGTGCAAACAAGTCCAGTGTCCTCTAAAGCTGTGCACAGCATGGCAACTGGATTCATAGAAAGCATGTGATTTCGAACTTaacctaaaaaacaaaaatagccaTTCCAATCCCCCACTTTCACTTCCCACTGCGCTTACTGAGTCCAGTTCAATGGACTAGACACCACTCACACTGTAGGCGTAACACTCGCTGATTCTGCAACATGTCATGATTTCCTGGTAACCTGTGATACATGTAAAGTTTCCTTCAGATAGGCAATGAAATCAGCATAGACTTTTGCACTTTTAGGTGGGTTTTCTCCAATTCAGCTGCAAGCTTAACGCTAATGCTCATGTTTAAACCCATGAATCTGGTTAGGTGTAGTTGAAGAGAAAATCTGGTTTGTATTTACACAGCAAGATGAGATGTTTAAGTCACATCTGCTTTCCATCtccttttatttatctttatttgttttgaaacTGTATAATTGTGTTAGTCTGTGCAAAAGCATGTAAATGTACTCCAGGTCATGCCTGAATCCAGAAACTGAATCGGATTCCAAGTGTTTACacctccagaaaaaaaaaaaaaaaacatgaatccA

Function

symbol description
acsl3b Predicted to enable long-chain fatty acid-CoA ligase activity. Predicted to be involved in long-chain fatty acid metabolic process; long-chain fatty-acyl-CoA metabolic process; and neuron differentiation. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum; lipid droplet; and plasma membrane. Is expressed in several structures, including digestive system; eye; gill; heart; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in asthma; breast cancer; and prostate cancer. Orthologous to human ACSL3 (acyl-CoA synthetase long chain family member 3).

NR:

description
PREDICTED: long-chain-fatty-acid--CoA ligase 3-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01897 ACSL, fadD; long-chain acyl-CoA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925340.2 True 6523 mRNA 0.42 16 11549783 11572390

Neighbor

gene id symbol gene type direction distance location
trnaw-cca_17 NA coding downstream 1344 11548368 ~ 11548439 (-)
LOC113533529 gpr55 coding downstream 53392 11492594 ~ 11496391 (-)
hes6 hes6 coding downstream 80996 11467120 ~ 11468787 (-)
gbp2 LOC108280462,LOC108280460 coding downstream 224537 11287176 ~ 11325246 (-)
scg2b scg2 coding downstream 292350 11254430 ~ 11257433 (-)
LOC113533285 ephb1,LOC108430182,LOC107549839,LOC107671589 coding upstream 491476 12063866 ~ 12363593 (-)
gpc1b LOC108280809 coding upstream 864313 12436703 ~ 12523017 (-)
gpc5c LOC108280917 coding upstream 1062667 12635057 ~ 12722764 (-)
LOC117595730 NA coding upstream 1152544 12724934 ~ 12726494 (-)
LOC113533469 NA coding upstream 1180260 12752650 ~ 12754252 (-)
LOC113533221 NA non-coding downstream 138619 11394881 ~ 11411164 (-)
G318552 NA non-coding downstream 148281 11400665 ~ 11401502 (-)
G318479 NA non-coding downstream 362383 11187197 ~ 11187400 (-)
G318293 NA non-coding downstream 540613 11007152 ~ 11009170 (-)
G318202 NA non-coding downstream 628221 10845723 ~ 10921562 (-)
LOC117599995 NA non-coding upstream 57180 11629570 ~ 11631921 (-)
G318639 NA non-coding upstream 117099 11689489 ~ 11693334 (-)
G318660 NA non-coding upstream 229257 11801647 ~ 11801862 (-)
G319059 NA non-coding upstream 1011475 12583865 ~ 12584089 (-)
G319163 NA non-coding upstream 1061503 12633893 ~ 12648886 (-)
ccl20a.3 LOC108261059 other downstream 1021504 10527282 ~ 10528279 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other downstream 2576508 8969204 ~ 8973275 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other downstream 2595673 8903824 ~ 8954110 (-)
G317176 NA other downstream 2664074 8883649 ~ 8885709 (-)
vcpip1 vcpip1 other downstream 3061154 8477223 ~ 8488629 (-)
wu:fb63a08 LOC108280878 other upstream 47486 11619876 ~ 11705877 (-)
LOC113533649 LOC108280860,LOC108433106 other upstream 1336063 12908453 ~ 12928071 (-)
ccl25a NA other upstream 2040126 13612516 ~ 13615743 (-)
LOC113533556 LOC108280202 other upstream 2092791 13665181 ~ 13680110 (-)
theg NA other upstream 3159344 14731734 ~ 14745487 (-)

Expression


Co-expression Network