LOC113533290 (midn,LOC108271022)


Basic Information

Item Value
gene id LOC113533290
gene name midn,LOC108271022
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16509561 ~ 16526583 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925341.2
ATCGAGCTCGCCACGCGCGTGCGGCTCGACATCGGGTCGGACAAGGGACGGAGAGGAAGAGCTTTAACGCAGCGTGTTTGTCTTAGTGCTCGTGCTGATTACCTTTTAGTGCACAATAGTTCTGGCATTCTTTTACgcaatgtatttttgtattttctgaaAAAGAACTAAATCATATCTACAAACGCTTTTGGTATATTTTAATAGATACGACGTTAACATCGACATTGAATTGAAATAGAATTGAAGTTGTACCGATTGTCAGGAATCGCATCGTCCGGACTGTCTGGATctcaaagttaaaaaataaaaaataaaaaaatcctaggagatcaCGCGAGAGGAATATTCACGTGGACCAGACacatagtgatttttttttttttgctcgaGCTCGAATGGAGCAGCACGCAGAAGCGCGAGGCTGCACCGGTCACGGATCGCGATCCCGGTGTTCCGAGCTCCTGCACGAGCACTGCATGCATTTATCCATCCAGTCGACGACGGGCACCCGCTTCGAGCTGTCTCTCCCCGCGGAGGAGACGGTGGAGGGGCTGAAGAGGAGGCTTTCACAAAAGCTCCGAGTGTCCAAAGACAGGCTCGCGCTTCTGCACAAAGACACGAGGCTAAGCTCAGGGCGGCTCCAGGACTTTGGGGTTACGGACGGGAGCAAGTTGACCCTCGTGCCCTCGGTGGAGGCAGGATTAATGTCTCAGGTCTCCAAACCAGAGCAGTCCATCATGCAAGCGCTGGAGAGTCTGACAGAAACTCAGGTTGGTGACTTCCTATCAGGTCGCTCTCCGCTGACACTTGCCCTTCGTGTAGGGGATCACATGATGTTTGTGCAGCTGCAACTGGCCGCGCAAAACTCGGGTGTCCAACAGTGCACCACTAGGGGACCTTTGAGCACAACCAGGACTGCCCAGCACAACACAGTGCCCTGTGGGGGCAACAGTGAGCACCCTCATACTCCAACCACTGCCCACAACAACCAGAGGGCATCAGCTGGACACCACGCCCACCACGCCCACCACACCCACCATGCTCACCATGCTCACCTGTCTCCCCCCTCCAGTCCTACACTTTCCCCAGGATCTGTCCATTATCCTCACCTGGCCACAGGTGCCTGTAGCCCTGCCCCCAGAGCAACCACGCCTTTCCAGCAGGGTGAGTGTGGGAATTCAAGTGGAAGTGGAAGCACCAGCTCATGGCCAAGTCGTAAACCGGGTGCGGTGATAGAGAGCTTCGTGAACCACGCTCCTGGGGTTTTCTCTGGAACCTTCTCAGGCACCCTTCACCCGAACTGTCAGGACAGCAGTGGGCGTCCACGCCGTGACATCAGCACCATCCTGCAGATCCTCAATGATCTACTGAGTGCCACACGCCACTACCAGGGCACACCTCCTGCCCTGGCCCAGCTCCGCTGCCATACTCAGACACCTGCGTCTCCCCGAGAGACGCCGCCCACCTCGCCATGCCCGCCTCCCTCACCCACTGTCATGGAGCTTCCATCAGCACCTGTGTCACCATTATCATCCTCACCTACCTCAGACAGACTGGCACTGAGCCACAACCGCATCAGCAAACCAATGGGCGAACCCTCCAGGCAGACGGAGAACAGGGCGACACGCTGTAAGGTGGAGCGTTTGCAGTTGTTGCTGCAGCAGAGGAGGCTCCGCAGGCGGGCGCGGAGAGAGCCCCGGGCTCCCTATCACTGGCTGAGCGAGCGCAAAGCCACCCGAAGCCACAGCAACAGCAGCCTGAGCAGTGACGGCTCCATCGACCTGGACTACGACGAGGCGCTCTGGAAGAACGACGTCCAGACCGACATCAGCTCTGAGTTCGTCGTGGCCTGAATGAGCAGCCCAAAGAAAGAAGGATGAGAGAATGAAAAGATTACGAGTGGCTGAAAGAGAAAGGATTTACTTTACGTAATGATGTGTAATGCTGGAATTTTTAGCGTTTGTTCAATATGAAACACAAAATAGCATTGGGAAGAGAACTCGTGTTCTACAGCATGAAGCGAACCAAGAGAGTGTCTTTCTGTACTCTAGATACACAAGATGTTCAAAGATTCTGAGACTTTTTCACCCGGTTTGCTCAATTGACTGTCTTAACATGGTGGTGGTTTGAGTTGCTGTTGTTACAAAAATGCGTCATGTAGCATTATGAAGCAAGAaattcaggtgtttctctcTGGTTTATTACATTTTGCACACTTCTTGACCTGTGAGCATTAAggtttcctttctttgtttttgataCTCAGCTTGGTTGAAACTCAGCTCAAGTGAACTCAAATACAAATTAACTCAAATCCAGAAAGCATTTATTACAGACACATTCTTTGCTTGTTCACACTTGTATATGTAACTGTATCTACTGGTTAAAGTATTAAGGTAATATCCCAGTGCCTCTGTTTACCACTTAGTGTATTGAAGCATCAAATCTGGAacacatctggatttttttttttttttttctgctacaaAGGATGACGTGCGAAAGAGAGGAGTCTTGTCTGGTCATCCATCTCATTATAACTAGGACCTGATTCTGCAGAAATGTACAATTCTGCATGCTTCTTGAACATACAAGGAACTATTAAGTGGGGTCATTCACATATTGGCTCTGTAGCACCGTTTTACAAACTGATTTGAAGAGAAAATGACTTATGTAGTATTTTAGGTTTATGTCACCTGCTGACCCACATATGCCCATCAAGATGAAGAGTAACGTCGGACATCTTTTCCACTATGGACCATTGCTGTCTCAACATTTGTATGATTGAGAAAACTGGAAATGAGGCATGATAACATATACATGGATGGACCTTGTGTACAGTGGCCTTactgatctttaaaaaaaataataaaaaatagcgAAATGTGCAGGCACTGGAAACTCTGGATCCTTGATGtgtattgtgattttttttttctttttaaattaaggaCACACCATTAGAGCATTAGTGAAAGGCTCCTGTGCCTCAACAACGTGCCTgagacaaaaggaaaaaagacgTTTCTTTCCTCGTCTGATAAGTCCCTCAGCCTTCTCAGCTGAGAAACAGAGATAAAAGAGTACttgctctgtgttttgtttttggcttttttttttttcgatcaTGATGTAATGTCTGTCCTGTGTATCTCTTGTGCATCGTTCGTCTTGTGTACATCCTGTCTTTCATTCTTGAAACCAGAATctccataaatatatatagatatatataatacatataaaaagaGGAACAGgtccaaataaacaaatatcacTCTGTAAACATACTCATAATATGTCACAATGTGGACGTCTTCTGTTTCAGCACCAAGTTCCTAAAATATTGTTACCTGGATGCATGGGATatgatataatttatttaaggTTGAATTGAATATATGAGTAGTTCATAAGGAAATATACGCATTTGGTTGGGATGTTGTTTTTAAAGTTGacgctggtgtttttttttgttttgtttttgttttttgtcaacGCTGCATTTTTTCGTTGCCTGTACTGTCTTGTGATCTCACAGGTGAGGAGCCTCTGCTTGTGTAGCACATTTTTATAactgttttaatttataaagcCGATCTTGCAACTGTGAAGAAACGTTATCTGATGTTTTTCTTGTCacctcttttgtgtgtgtttgtttttctctttatttccgtttttgtctcttttgtcAAAAATGAAACCTGGTATTGTAAAAGAGGGAAACAACTAAAAcaactgattttctttgttcatAAGCaatacatttcagtgtggcttgctgtagacatttttttctttttaggtaataaattttaattttaatgcaat

Function

symbol description
midn Predicted to be located in cytosol and nucleolus. Predicted to be active in nucleus. Is expressed in several structures, including axis; basal plate midbrain region; lens placode; nervous system; and presumptive diencephalon. Orthologous to human MIDN (midnolin).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925341.2 True 3837 mRNA 0.45 7 16509561 16526583

Neighbor

gene id symbol gene type direction distance location
cirbpa cirbpa,LOC108280649,LOC107655466,LOC107574409,LOC107729620,LOC107665639,LOC107712399 coding downstream 35873 16470099 ~ 16473688 (-)
cib3 cib3,LOC107687907 coding downstream 117281 16385427 ~ 16392280 (-)
LOC113533484 LOC108280930,LOC108427189 coding downstream 166724 16336003 ~ 16342837 (-)
ap1m1 ap1m1,LOC107696211 coding downstream 182604 16308558 ~ 16326957 (-)
klf2b LOC108280879 coding downstream 279262 16227671 ~ 16230299 (-)
LOC113533174 LOC108280837 coding upstream 67561 16594144 ~ 16601594 (-)
LOC113533630 pnp5a,LOC108280898,LOC108427136,LOC107692836,LOC107747996,LOC107569603,LOC107728028,LOC108440276,LOC107703870 coding upstream 78815 16605398 ~ 16610978 (-)
LOC113533663 NA coding upstream 93050 16619633 ~ 16619734 (-)
foxl2b foxl2,LOC108280919,LOC101448029 coding upstream 109537 16636120 ~ 16638282 (-)
LOC113533139 nop9 coding upstream 139046 16665629 ~ 16678051 (-)
G321468 NA non-coding downstream 53438 16394208 ~ 16456123 (-)
G321470 NA non-coding downstream 108034 16399300 ~ 16401527 (-)
LOC117595731 NA non-coding downstream 114022 16394753 ~ 16395539 (-)
G321465 NA non-coding downstream 134218 16374510 ~ 16375343 (-)
G321354 calr3b,LOC107750920,LOC107696693,LOC108280796,LOC107552714 non-coding downstream 286247 16187976 ~ 16223314 (-)
LOC113533305 NA non-coding upstream 19656 16546239 ~ 16547501 (-)
G321536 NA non-coding upstream 82233 16608816 ~ 16609557 (-)
G321652 NA non-coding upstream 216323 16742906 ~ 16744015 (-)
G321998 NA non-coding upstream 833205 17359788 ~ 17389919 (-)
G322072 fuz non-coding upstream 953859 17480442 ~ 17481385 (-)
G321462 NA other downstream 142557 16357574 ~ 16367004 (-)
LOC113533563 NA other downstream 785205 15687082 ~ 15724356 (-)
LOC113533479 LOC108280451 other downstream 1277981 15222778 ~ 15231580 (-)
theg NA other downstream 1764074 14731734 ~ 14745487 (-)
LOC113533556 LOC108280202 other downstream 2829451 13665181 ~ 13680110 (-)
stk11 stk11 other upstream 38125 16564708 ~ 16587816 (-)
trnal-uaa_3 NA other upstream 446944 16973527 ~ 16973770 (-)
G322080 NA other upstream 973482 17500065 ~ 17500832 (-)
LOC113546399 LOC108280496,LOC108430154 other upstream 1327264 17853847 ~ 17872108 (-)
G322538 NA other upstream 1867666 18394249 ~ 18394823 (-)

Expression


Co-expression Network