pgpep1 (pgpep1,LOC107596298,LOC107552686,LOC107660389,LOC107696873)


Basic Information

Item Value
gene id pgpep1
gene name pgpep1,LOC107596298,LOC107552686,LOC107660389,LOC107696873
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16090524 ~ 16094854 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925366.2
ttcttcttctcagctACGCAATACATTTGTTCTTGAGACAATggcttaaactttttttttttttttttaccatttctAGATAATTTtccatattatttttattagtcaGAATTAAAAAAGACATCATACTTATTACGCAAATGATGAGACGttgtgatataatgcactgCTCAACGCTAATAGTTTAActgttgatagatattagattgtAGCCTCCTAGCTAATATAACCTGTAGGTGAGGTGAGTAACCGGAACAGCAGGTGGCGCTGTGGCGCTTCATGGCGCTGTAGCGTCTTCGCTAATAGGCGAGAGAGCGCGCGAGAGAGAGCGTTACCGGAAGCGCTGATGGGAGTTGTATTTATCTTAGCACCAGTCATCAAGCTGTCTGTTCGGGTCCGGATTCTCCTATGAAACATTATTTTATCATCTAAAAAATTATAATTCGCTCGGTTCTCacgttagtgtcagtgtcatgGAGCAAAAGAAGACGGTTATTGTGACAGGTTTTGGACCTTTTGGAGAACATGCTGTTAATGCAAGCTGGGTGGCAGTGCAGGAGCTAAAGGAGTTGGGACTCGGACCAACTGTGGATCTACACGTTACTGAGGTTCCTGTGGAGTACCAAGCAGTCCAGAATCTTCTGCCCGCACTATGGGATCAGTATCACCCACAGTTAGTGGTCCATGTTGGAGTGTCTGGAATGGCTACAACAGTAACCCTTGAAAAATGCGGTCATAACCATGGCTATAGGCGACTTGACAACTGTGACTTCTATCCTAAATCCGGGTGCTGTATAGAGGGGGGGCCAGACTGCATCAAGTCAGCCATCGATATGGATGTTGTCTGCAAGAGGGTCAACAACTCAAACATCGGAATCTCCGTATCCGTTTCAAAGGATGCTGGCAGATACCTGTGTGACTACACCTACTACACCTCGTTGTACCTGGGCAAGGGCCGATCTGCGTTCGTGCACGTGCCCCCCCTGGGGAAGCCCTACAGTGCGGAACAGCTGGCACAGGCACTCCGAGCTGTGATCTTGGAGATGCTGGACATGTTGGAGCATAGTACGGAAAAGCAATGTTGCCAGCACAGTCATTGAAAAATCCCAGAACAGCTTTTTAACCCAGTATGTAGTGTATGTTTGGTGATATCTGATACACTACATAGGCGGGACTGGGCTGAGTTGCAATGTAGCCCAAACACCAGACCGAAGCCTGTTGCTGCTCAGCTCAAACAAGGATAGACAGCACTTTGTGGGGTATAGTGAAAAGACGCCAAGATGTGGTGCTATGTAtaaaatttatttgtgaattgaACTAAATAATTAGTCCATCAGCACATACACAGCCATGTGCAGTAAGTTTTCCATGACcgcctatacacacacacacacacacacacacacacatatatatatatatatatatatatatatata

Function

symbol description
pgpep1 Predicted to enable pyroglutamyl-peptidase activity. Predicted to be involved in proteolysis. Predicted to be located in cytosol. Orthologous to human PGPEP1 (pyroglutamyl-peptidase I).

NR:

description
PREDICTED: pyroglutamyl-peptidase 1 isoform X2

GO: NA

KEGG:

id description
K01304 pcp; pyroglutamyl-peptidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925366.2 True 1439 mRNA 0.44 5 16090524 16094854

Neighbor

gene id symbol gene type direction distance location
upf1 upf1,LOC107660376,LOC107724030,LOC105907049,LOC107696277 coding downstream 2006 16071106 ~ 16088518 (-)
LOC113533416 homer3,LOC108280570,LOC108427175,LOC107696283 coding downstream 21963 16041828 ~ 16068561 (-)
polr2ea polr2e,polr2eb,LOC107669821,LOC107599482 coding downstream 161457 15924221 ~ 15929067 (-)
zgc:85843 tm6sf2 coding downstream 229042 15854503 ~ 15861482 (-)
LOC113533480 LOC108280289,LOC108427160,LOC107724981,LOC108239455,LOC106526424,LOC106923029 coding downstream 441780 15594435 ~ 15648744 (-)
LOC113533206 loxl5b,LOC108280695,LOC108427108 coding upstream 33847 16128701 ~ 16131801 (-)
LOC117599986 LOC108280695 coding upstream 36715 16131569 ~ 16132462 (-)
nmrk2 LOC108280697,LOC108427183,LOC107750947,LOC103029326,LOC107552712,LOC107696854,LOC107687917,LOC107723974 coding upstream 45910 16140764 ~ 16143363 (-)
atcayb atcay,LOC108280696,LOC108427182,LOC105906996,LOC105906923 coding upstream 53009 16147863 ~ 16160217 (-)
klf2b LOC108280879 coding upstream 132817 16227671 ~ 16230299 (-)
G321347 NA non-coding downstream 40881 16049442 ~ 16049643 (-)
G321330 NA non-coding downstream 48783 16040881 ~ 16041741 (-)
LOC117595737 NA non-coding downstream 263180 15811353 ~ 15827344 (-)
G321032 NA non-coding downstream 497908 15592160 ~ 15592616 (-)
G320897 NA non-coding downstream 630108 15380135 ~ 15460416 (-)
G321349 NA non-coding upstream 4014 16098868 ~ 16099238 (-)
G321354 calr3b,LOC107750920,LOC107696693,LOC108280796,LOC107552714 non-coding upstream 93122 16187976 ~ 16223314 (-)
G321465 NA non-coding upstream 279656 16374510 ~ 16375343 (-)
G321468 NA non-coding upstream 299354 16394208 ~ 16456123 (-)
LOC117595731 NA non-coding upstream 299899 16394753 ~ 16395539 (-)
LOC113533563 NA other downstream 366168 15687082 ~ 15724356 (-)
LOC113533479 LOC108280451 other downstream 858944 15222778 ~ 15231580 (-)
theg NA other downstream 1345037 14731734 ~ 14745487 (-)
LOC113533556 LOC108280202 other downstream 2410414 13665181 ~ 13680110 (-)
ccl25a NA other downstream 2474781 13612516 ~ 13615743 (-)
G321462 NA other upstream 262720 16357574 ~ 16367004 (-)
stk11 stk11 other upstream 469854 16564708 ~ 16587816 (-)
trnal-uaa_3 NA other upstream 878673 16973527 ~ 16973770 (-)
G322080 NA other upstream 1405211 17500065 ~ 17500832 (-)
LOC113546399 LOC108280496,LOC108430154 other upstream 1758993 17853847 ~ 17872108 (-)

Expression


Co-expression Network