calr3b (LOC108280796,LOC108427098,LOC107750920,LOC107552714,LOC107723933,LOC107687912,LOC102296215)


Basic Information

Item Value
gene id calr3b
gene name LOC108280796,LOC108427098,LOC107750920,LOC107552714,LOC107723933,LOC107687912,LOC102296215
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16187989 ~ 16193122 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925383.2
ATAAACCTCACCAGACCTGGCTGAGGTGGACAAATCGCTGGAGGGGGAAGAGCTAGGAAGGAAGACTGGTACTGCTTCACGAGAAATTTGAACTAAAAATGCAAAGCTTTACGTTGTTTACGATATTTTCAGTAGTGCTGTTGACGTTTTCAGTCGAAGCTACTGTTTACTTTAAAGAGCAATTCCTCGACGGTGATGCATGGAAGAGTCGATGGGTGAACTCGGAACACAAATCTGACTATGGACAGTTCAAACTCACTGCTGGAAACTTCTACGGTGatgcagagaaagacaaagGCTTGCAAACCAGCCAGGATGCCCGCTTCTACGCTGCCTCTGCACGGTTTGAGCCCTTCAGCAATGAGGGCAAAAGCCTGGTGATCCAGTTCTCTGTGAAACACGAGCAGAAGATCGATTGCGGAGGCGGCTACGTCAAGGTCTTCCCCGCTGACCTCAACCAGGCTGATCTGCACGGAGACTCGCAGTACTACATCATGTTTGGTCCGGATATCTGTGGTTACAGCACAAAAAAGGTCCACGTCATCTTTAACTACAAAGGCAAGAACCACCTCATCAAGAAGGAGATCAAGTGTAAAGATGACGAGCTGACCCACCTCTACACGCTGATCCTGAACCCAGACCAGACCTATGAGGTGAAGATCGACAACGAGAAGGTGGAGTCCGGCACCCTGGAGGAGGACTGGGACTTCCTGCCTCCTAAGAAGATCAAGGACCCTGAAGCAAAGAAACCAGAGGACTGGGATGATCGAGCCAAGATCAGTGACGAGACAGACACCAAGCCTGAGGACTGGGACAAACCTGAGAATATTCCAGATCCTGATGCTAAGAAGCCTGAAGACTGGGATGAGGATATGGATGGTGAATGGGAGCCTCCCATGATCCCCAACCCAGAGTACAAGGGAGAGTGGAAACCAAAGCAGATCGATAACCCCAACTACAAAGGAGTCTGGGTGCACCCAGAGATCGACAACCCCGAGTACAGTCCTGACTCTGAGATCTACAAGTTTGAAAACGTTGGAGTTATTGGGCTGGATCTGTGGCAGGTCAAGTCCGGGACCATTTTTGACAACTTCCTGATCACAGATGATGTGAAAGAAGCAGAGGAATTTGGAAAAGAAACATGGGGCGTTACTAAGGGTCcagagaagaaaatgaaagatgaGCAAGATGAAAAGAAACgcaaagaggaggaagaaaagaacaAGGACCAGGACACAGAggcagatgatgatgaaggagacgacgaagaagaagaggaggaagaggaggagacagagacaaCAGAGGAGCCCGAAGCAGAGGGAGAGGAGGACGATGTTCAGCCTAAAGACGAACTATAAACCAGGAAGTGCTTCCTCAGCGCATGCGTTCTGGCACCAGGGATACAGCTGCAGGGCATCGGCTCAAAATGATGCCAATTGGAATGGGACTCTGTTTTTTGCGTTTTATGCGGAACAGAAAGCAGAGTAGTAAATTTCAGATTTAGAATTCAGCGTTGTGTTTTTGGGTGTATGTTTaactttatatacttttttttttttttttttttcttttctttttttgaggGTGGGAGATGAGGTTAGGAAGCAGGTGTAGGATTTGGGGGTTGAAATCTTTcataaatcttttctttttgccttaagggaaaaaaaagatcagactACTTAGACATATCAGTTTCATTCTGtggtattttttattaaaaaaaaaaaaccctgaagtcTTGAAGTTAACACGGCTGTAAATAAGATAAAGTTACTGGTTCACAACAGAGGAAAATTTCTACCTTGTGAGAATGTGGTGACTCGAAAGAGTGAATGTTTGCAGAAGATTGTATTATACTTAAAATCCACAGAATTTCAAACAGCACCTCCTTCCACTCATTCTGTGATTAAATTTTTTCTCTTTGGCACTGA

Function

NR:

description
calreticulin-like

GO: NA

KEGG:

id description
K08057 CALR; calreticulin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925383.2 True 1937 mRNA 0.45 9 16187989 16193122

Neighbor

gene id symbol gene type direction distance location
trnag-gcc_19 NA coding upstream 2422 16185497 ~ 16185567 (+)
trnag-gcc_18 NA coding upstream 3847 16184072 ~ 16184142 (+)
rx2 LOC108280798,LOC108427186,LOC107596245,LOC107687913,LOC107723957,LOC107552715,LOC107696236 coding upstream 7490 16174570 ~ 16180499 (+)
cplx4c cplx4c,LOC108280361 coding upstream 20643 16162454 ~ 16167346 (+)
uba52 uba52,LOC100135798,LOC100194659 coding upstream 146251 16039835 ~ 16041738 (+)
eps15l1b LOC108280681 coding downstream 3802 16196924 ~ 16223330 (+)
tpm4b tpm4,tpm4b,LOC108280645,LOC102199996,LOC100703626,LOC101474423,LOC108427191,LOC106537044,LOC103156889,LOC108424981 coding downstream 164455 16357577 ~ 16375352 (+)
rab8a rab8a,LOC107687930,LOC107696202,LOC103479775 coding downstream 183048 16376170 ~ 16385221 (+)
sugp1 sugp1,LOC107729615,LOC107563402,LOC100304763 coding downstream 202706 16395828 ~ 16404567 (+)
mau2 mau2 coding downstream 211666 16404788 ~ 16419408 (+)
trnag-gcc_20 NA non-coding upstream 948 16186971 ~ 16187041 (+)
LOC117599979 NA non-coding upstream 986 16185620 ~ 16187003 (+)
G321258 NA non-coding upstream 50385 16135324 ~ 16137604 (+)
G321256 NA non-coding upstream 56984 16130730 ~ 16131005 (+)
G321255 NA non-coding upstream 57305 16130422 ~ 16130684 (+)
G321429 NA non-coding downstream 193135 16386257 ~ 16386523 (+)
G321434 NA non-coding downstream 243077 16436199 ~ 16446124 (+)
G321435 NA non-coding downstream 263321 16456443 ~ 16457168 (+)
G321454 NA non-coding downstream 401075 16594197 ~ 16600593 (+)
G321563 NA non-coding downstream 473308 16666430 ~ 16703816 (+)
G321257 LOC108280695 other upstream 55625 16131335 ~ 16132364 (+)
si:ch211-178n15.1 LOC108280694 other upstream 67956 16112035 ~ 16120033 (+)
jund jund,LOC108280549 other upstream 76900 16100533 ~ 16111089 (+)
gpx4b gpx4b,gpx4,LOC107552704,LOC107723219,LOC103364371,LOC102207447 other upstream 251216 15929947 ~ 15936773 (+)
G321088 NA other upstream 316994 15869016 ~ 15870995 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other downstream 549683 16742805 ~ 16748340 (+)
LOC117599973 LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616 other downstream 563509 16756631 ~ 16788968 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other downstream 598280 16791402 ~ 16793698 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other downstream 645646 16838768 ~ 16859682 (+)
fuz fuz other downstream 1285712 17478834 ~ 17483677 (+)

Expression


Co-expression Network