sdhc (sdhc)


Basic Information

Item Value
gene id sdhc
gene name sdhc
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10173820 ~ 10186067 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925414.2
GCGCATAGCTGCTTGAAATCTGCGTTCTTCGATCCCACCCCTACATCCGCGTACGTCACTTCCTTATCTCGGAGAACATGGCGTTACTTCTAAGGATGGTGGCCCGGCAGGGTCTGTGTTCATCGCGGACACAACTCTGTAGGCATGCTGTTCCCATGGGAACCTCAGCAAAAGAGGAGATGGACAAATTCTGGGCCAAAAACTCTCGACTCAACAGACCTCTTTCTCCTCATATAACCATTTATAGGTGGTCAGTCCCCATGATGATGTCAATCACTCACAGAGGAACAGGCGTAGGGCTCagtgcagGTATTTCTGCTTTTGCGGTTGCTGCACTAGTGTTGCCGGGCAGTTTTCCTTACTACCTGGACCTGGTCCACTCCTCCTCCATGGGTCCAGCTCTCATCACCACAGCCAAATTCGCCCTGTCCTTCCCAGTGGCCTACCACACTTACAATGGCATTCGCCACCTGatGTGGGATGTCGGGAAGGGCTTTAAGATCCCTGAGGTCTACCGTTCTGGCTACATTGTCATCGCTCTGTCCATTTTCACCTCAGTCGCCTTGACTGTACTCTGAACCTGATGTAGTAAAGAACaagaaaatttgtaaaatttgcaaatttgtaGAGGAGCAGAAACAGGAGTATGAgatgtctttgtttttgtttatgtctGTCTTTAGTGCCCCTTGTGGCCCTGActtattaataaagtaaattaagAGATAAA

Function

symbol description
sdhc Predicted to enable electron transfer activity; metal ion binding activity; and succinate dehydrogenase activity. Predicted to be involved in mitochondrial electron transport, succinate to ubiquinone. Predicted to act upstream of or within tricarboxylic acid cycle. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone). Human ortholog(s) of this gene implicated in Carney-Stratakis syndrome; gastrointestinal stromal tumor; and paraganglioma. Orthologous to human SDHC (succinate dehydrogenase complex subunit C).

NR:

description
PREDICTED: succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like isoform X2

GO: NA

KEGG:

id description
K00236 SDHC, SDH3; succinate dehydrogenase (ubiquinone) cytochrome b560 subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925414.2 True 730 mRNA 0.48 6 10173820 10186067

Neighbor

gene id symbol gene type direction distance location
atp1a2a atp1a2a,LOC108261056,LOC108428278,LOC107692876,LOC107749099,LOC107721700 coding upstream 43098 10061226 ~ 10130722 (+)
mpz mpz,LOC106600490 coding upstream 120280 10042888 ~ 10053540 (+)
lig1 lig1 coding upstream 139805 10003656 ~ 10034015 (+)
LOC113533165 LOC108280405,LOC100705068 coding upstream 184776 9981186 ~ 9989044 (+)
dnaaf6 pih1d3 coding upstream 221500 9943753 ~ 9952320 (+)
trnar-ucu_12 NA coding downstream 1684 10187751 ~ 10187824 (+)
cadm3 cadm3,LOC107749121,LOC107600075 coding downstream 10041 10196108 ~ 10288224 (+)
kirrel1b kirrelb,LOC108280344,LOC108428281,LOC107749112,LOC107659821,LOC107557870,LOC107721762 coding downstream 105763 10291830 ~ 10347388 (+)
ccl20a.4 NA coding downstream 346917 10532984 ~ 10534451 (+)
vwa5b2 LOC108280745 coding downstream 469342 10655409 ~ 10704492 (+)
G317754 NA non-coding upstream 16290 10157277 ~ 10157530 (+)
G317703 NA non-coding upstream 66899 10105766 ~ 10106921 (+)
G317633 NA non-coding upstream 233583 9939969 ~ 9940237 (+)
G317621 NA non-coding upstream 294064 9878915 ~ 9879756 (+)
G317618 NA non-coding upstream 298000 9874996 ~ 9875820 (+)
G317761 NA non-coding downstream 239 10186306 ~ 10187126 (+)
G317939 NA non-coding downstream 318096 10504163 ~ 10510193 (+)
LOC117599937 NA non-coding downstream 331521 10517588 ~ 10520208 (+)
G317946 NA non-coding downstream 338419 10524486 ~ 10524774 (+)
G317963 NA non-coding downstream 388747 10574814 ~ 10575152 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other upstream 195904 9958993 ~ 9977916 (+)
G317390 NA other upstream 758656 9412323 ~ 9415164 (+)
LOC117599964 LOC107387363,LOC107676291,LOC107756568 other upstream 1360410 8811595 ~ 8813410 (+)
G316745 NA other upstream 1904622 8268709 ~ 8269198 (+)
G316744 NA other upstream 1909759 8263339 ~ 8264061 (+)
capn10 capn10 other downstream 350364 10536431 ~ 10562994 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other downstream 377754 10563821 ~ 10568907 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other downstream 544279 10730346 ~ 10734088 (+)
per2 LOC108280459,LOC108439864 other downstream 1213817 11399884 ~ 11464769 (+)
G318439 NA other downstream 1281232 11467299 ~ 11469499 (+)

Expression


Co-expression Network