cdc34b (ub2r1,cdc34b,LOC108280790,LOC108433104,LOC105020474)


Basic Information

Item Value
gene id cdc34b
gene name ub2r1,cdc34b,LOC108280790,LOC108433104,LOC105020474
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 12986262 ~ 12999987 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925491.2
CCACAATGCATTGCGAACTTATTGACGAGTGGaactgatgtaaaaaaaaaaaaaatcagagccaTACTGGAGATTCCAGCAGCTGCGACGAACAAAATGGCTCAGAACAGCAGTTCTCACGTAGCAAGCTCACAGAAAGCGTTAATGCTTGAAATGAAAAGCCTGCAAGAGGAGCCAGTGGAGGGCTTTAAAATCACCCTGGTGGACGAGGCAGACCTCTATAACTGGGAAGTGGCCATTTTCGGACCACCAAATACACTCTATGAAGGGGGTTACTTTAAGGCACGTATCAAGTTTCCCATCGACTACCCCTACTCCCCTCCAGCCTTCAGATTCCTCACAAAAATGTGGCACCCTAACATTTACGAGaACGGGGACGTGTGTATCTCTATCCTCCACCCTCCAGTAGATGACCCGCAGAGCGGAGAGCTGCCCTCGGAGAGGTGGAACCCAACACAGAACGTCAGaaccATCCTGCTGAGCGTCATATCCTTGTTGAACGAGCCCAACACTTTCTCTCCTGCTAATGTGGACGCCTCTGTGATGTACCGCAAGTGGAGAGACAGCAAAGGAAAGGACAGAGAGTATGCAGAGATCATTCGaaagCAGGTTCTGGCCACTAAAGCAGAAGCAGAGCGCGACGGTGTTAAAGTTCCCACTACACTGGCTGAGTACTGTGTGCGCACGCGCGCCCCCCCTACAGACGAGGGCTCTGACTTGTTTTACGATGATTACTATGATGACGAGGACTTGGAGGACAATAATGATGAGGACTGTTGCTACGATGAAGATGACTCAGGAAACGAGGAATCGTGACCCTGCCATCACAATCATTATcctcttcatcaccatcatctttATCCCGAAACGTTGAAAAGCTGTCGCATGCACcttgtatttcttttcttttgaaaatgcTATAAAAGATGCTataggttctttttttttctagttggAAAATGAAAGCATTCTGTTTTCTCTCCGGTTTTTGTTGAATTGAGTTTTCCTTTTGTTcccttttttcatttatcttAACCTTCCCCCATTTTCTTGCGCTATGAAATTCAAACATTTCCGCTAAATAATAGAACAACTATGAATGGGTGAAAAggagggtgttttttttttgctgtactgTGCATGTTGGCATTGTGGTGTTTTTATTACACAGTGCTGCTCCCTTCATCCaccgtttttctttttttcccctgaaagtTCTCTAATCAAGGATAATCTACAAGTCCAACCagttcagcaataaaatgcattttgcaTACTTACATGCTCCAGAGGCAAGATTTAGAAACTGAATACAGCAGAGTTGTCTTTTATCCTGACGTTTGTGTTACAcgtgtgtttttcctgctctaacacaacTGATTTTATGCGCCGATGTGCttgagcaggaaaaacactgaactgtGTATTGCTGTGGATTGATCTACATCCGGTTTGAATGCTTGTAGAAAGATTTGTTATCGATGTTAAGGGACTGATTAATCTTTTGTTTTGAGGGAGAAACACTTGATGTGTGCCCTGCAGAGGCCTAAACCCCTACTACCACTATGTGAGATTCCGTGCATTATTTTATGATGGTGGTGTTTTAACCTCAAATTGTAATCCCATATTTCCTTATGTCCTGTGATAGTGTGCATCCGATAAACAAGGATGCGAATCATGACGTTAAAATGGtaggagggtttttttttt
>XM_026925492.2
aaaaaaaatcagagccaTACTGGAGATTCCAGCAGCTGCGACGAACAGTCAGTCAACTATCTCAGTTGTTTactccattttctcttttgaGCAAGTCGTTTTGAGCACCGTGTAGAGTTATTTTTTTGCCCCCAACAGAATTTGTCAACTTTTGTACAAAAATAGACAAAGCCAAAAGAAAATGGCTCAGAACAGCAGTTCTCACGTAGCAAGCTCACAGAAAGCGTTAATGCTTGAAATGAAAAGCCTGCAAGAGGAGCCAGTGGAGGGCTTTAAAATCACCCTGGTGGACGAGGCAGACCTCTATAACTGGGAAGTGGCCATTTTCGGACCACCAAATACACTCTATGAAGGGGGTTACTTTAAGGCACGTATCAAGTTTCCCATCGACTACCCCTACTCCCCTCCAGCCTTCAGATTCCTCACAAAAATGTGGCACCCTAACATTTACGAGaACGGGGACGTGTGTATCTCTATCCTCCACCCTCCAGTAGATGACCCGCAGAGCGGAGAGCTGCCCTCGGAGAGGTGGAACCCAACACAGAACGTCAGaaccATCCTGCTGAGCGTCATATCCTTGTTGAACGAGCCCAACACTTTCTCTCCTGCTAATGTGGACGCCTCTGTGATGTACCGCAAGTGGAGAGACAGCAAAGGAAAGGACAGAGAGTATGCAGAGATCATTCGaaagCAGGTTCTGGCCACTAAAGCAGAAGCAGAGCGCGACGGTGTTAAAGTTCCCACTACACTGGCTGAGTACTGTGTGCGCACGCGCGCCCCCCCTACAGACGAGGGCTCTGACTTGTTTTACGATGATTACTATGATGACGAGGACTTGGAGGACAATAATGATGAGGACTGTTGCTACGATGAAGATGACTCAGGAAACGAGGAATCGTGACCCTGCCATCACAATCATTATcctcttcatcaccatcatctttATCCCGAAACGTTGAAAAGCTGTCGCATGCACcttgtatttcttttcttttgaaaatgcTATAAAAGATGCTataggttctttttttttctagttggAAAATGAAAGCATTCTGTTTTCTCTCCGGTTTTTGTTGAATTGAGTTTTCCTTTTGTTcccttttttcatttatcttAACCTTCCCCCATTTTCTTGCGCTATGAAATTCAAACATTTCCGCTAAATAATAGAACAACTATGAATGGGTGAAAAggagggtgttttttttttgctgtactgTGCATGTTGGCATTGTGGTGTTTTTATTACACAGTGCTGCTCCCTTCATCCaccgtttttctttttttcccctgaaagtTCTCTAATCAAGGATAATCTACAAGTCCAACCagttcagcaataaaatgcattttgcaTACTTACATGCTCCAGAGGCAAGATTTAGAAACTGAATACAGCAGAGTTGTCTTTTATCCTGACGTTTGTGTTACAcgtgtgtttttcctgctctaacacaacTGATTTTATGCGCCGATGTGCttgagcaggaaaaacactgaactgtGTATTGCTGTGGATTGATCTACATCCGGTTTGAATGCTTGTAGAAAGATTTGTTATCGATGTTAAGGGACTGATTAATCTTTTGTTTTGAGGGAGAAACACTTGATGTGTGCCCTGCAGAGGCCTAAACCCCTACTACCACTATGTGAGATTCCGTGCATTATTTTATGATGGTGGTGTTTTAACCTCAAATTGTAATCCCATATTTCCTTATGTCCTGTGATAGTGTGCATCCGATAAACAAGGATGCGAATCATGACGTTAAAATGGtaggagggtttttttttt

Function

symbol description
cdc34b Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent protein catabolic process. Is expressed in central nervous system. Orthologous to human CDC34 (cell division cycle 34, ubiqiutin conjugating enzyme).

NR:

description
PREDICTED: ubiquitin-conjugating enzyme E2 R2-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K02207 UBE2R, UBC3, CDC34; ubiquitin-conjugating enzyme E2 R

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925491.2 False 1710 mRNA 0.43 6 12986262 12999987
XM_026925492.2 True 1795 mRNA 0.43 6 12986262 12999940

Neighbor

gene id symbol gene type direction distance location
kcnj9 kcnj9,LOC108280861,LOC108433105,LOC107698496,LOC107713649,LOC107600231,LOC107757805,LOC107599257 coding downstream 21481 12940528 ~ 12964781 (-)
svilb LOC108280625 coding downstream 80826 12844080 ~ 12905436 (-)
LOC113533473 LOC108280623,LOC108280423 coding downstream 146249 12834674 ~ 12840013 (-)
LOC113533584 LOC108280423,LOC108280624 coding downstream 153733 12820071 ~ 12832529 (-)
LOC117595732 NA coding downstream 229118 12756704 ~ 12757144 (-)
LOC113533516 NA coding upstream 161549 13161536 ~ 13165217 (-)
cactin cactin,LOC103479278,LOC103479458 coding upstream 285385 13285372 ~ 13294978 (-)
LOC113533154 pde4dip coding upstream 306790 13306777 ~ 13377178 (-)
LOC113533394 LOC108280525 coding upstream 386404 13386391 ~ 13388837 (-)
admp LOC108280256,LOC108439880,LOC107754609,LOC107687929,LOC107596296,LOC107696672,LOC105906921,LOC107750936 coding upstream 589582 13589569 ~ 13592666 (-)
G319429 NA non-coding downstream 129684 12811315 ~ 12856578 (-)
G319186 NA non-coding downstream 189328 12772649 ~ 12796934 (-)
G319178 NA non-coding downstream 207036 12754768 ~ 12779226 (-)
G319182 NA non-coding downstream 220271 12764254 ~ 12765991 (-)
G319163 NA non-coding downstream 337376 12633893 ~ 12648886 (-)
G319474 NA non-coding upstream 29122 13029109 ~ 13029704 (-)
G319496 NA non-coding upstream 69312 13069299 ~ 13069522 (-)
G319544 si:ch211-168n16.1,LOC108433102,LOC108280795,LOC107713651,LOC107600229,LOC107757803,LOC107662975 non-coding upstream 118801 13118788 ~ 13119111 (-)
G319557 NA non-coding upstream 135617 13135604 ~ 13135860 (-)
G319559 NA non-coding upstream 136398 13136385 ~ 13136589 (-)
LOC113533649 LOC108280860,LOC108433106 other downstream 58191 12908453 ~ 12928071 (-)
wu:fb63a08 LOC108280878 other downstream 1280385 11619876 ~ 11705877 (-)
ccl20a.3 LOC108261059 other downstream 2457983 10527282 ~ 10528279 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other downstream 4012987 8969204 ~ 8973275 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other downstream 4032152 8903824 ~ 8954110 (-)
ccl25a NA other upstream 612529 13612516 ~ 13615743 (-)
LOC113533556 LOC108280202 other upstream 665194 13665181 ~ 13680110 (-)
theg NA other upstream 1731747 14731734 ~ 14745487 (-)
LOC113533479 LOC108280451 other upstream 2222791 15222778 ~ 15231580 (-)
LOC113533563 NA other upstream 2687095 15687082 ~ 15724356 (-)

Expression


Co-expression Network