LOC113533381 (LOC108280169,LOC108439884,LOC100333521,LOC107696163)


Basic Information

Item Value
gene id LOC113533381
gene name LOC108280169,LOC108439884,LOC100333521,LOC107696163
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13705300 ~ 13710697 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925505.2
CAATGCATTATGGATGTTCATGCCCTGTATTTGCATTGAGGGTAGTGCTTATCTGATACGCGGCAGCTGTGAGGATTTAAAAACACGTCATGCCGCTTATTAGCAGTATTTTACTATGGCTGGTGTTTGTTTTGGATGTTTCTGAACAGGCTCCGAAAGTAAACGCTGTCGGGGAAATATCCAATTCCTGCTACAAACCAATCAAGTTCAACAGACCTACGTTTGTAAGAACGTATCCCAGACCTCATGAGTACTTGAACATCACTGAGCTCCCTGCTGTCTGGGACTGGCGTAACATTGATGGGTTAAACTATGTGAGTGTGACGCGCAATCAGCATATCCCTCAGTACTGTGGCTCCTGCTGGGCCATGGGCTCCACCAGCGCTCTGGCAGATCGTATAAACATCAAAAGGAAAGGGGCGTGGCCATCAGCTTACCTATCCGTCCAGAACGTAATTGACTGTGGAGGGTCAGGGTCTTGTTTTGGAGGTGATCACCTGGGTGTTTACGCTTACGCACATGACAAGGGCATTCCAGATGAAACCTGCAACAATTATCAGGCCAGAAATCAAAAGTGTGATCTGTTTAACCAGTGTGGCACCTGCTCGTTCTTCGGGTCCTGTTCTATTGTAAAGAACTACACTTTGTGGAAAGTAGGAGACTACGGTGAGGTTTCAGGACGAGACCAGATGAAAGCTGAGATCTACAAAAATGGCCCAATAAGCTGTGGAATCATGGCAACTAAAGGTCTTGAGGCATACGAGGGAGGTGTGTTTGCAGAGTTTCATGCCATCTCACTCATGAACCACATCATATCTGTGGCGGGCTGGGGAGTCACCGAGGATGGAACAGAGTACTGGATCGTCAGGAACTCCTGGGGCGAGTTTTGGGGTGAGGCAGGCTGGGCCCGGATAGTCACCAGCGCATATAAAGGGGGTAAAGGGAACTGGTACAATCTTGCCATCGAGAAAGCTTGTGCATATGGAGATCCCATAGTGGCCTAGAGGAAGAGCAACTGTTGAGAGCAGCTCTGTCCACATGTACAGTGTGGAATCCGACTGAGCACAACACTTACTACAGACCTTATTAAAGTGTTATGAATGGGATTGTGGTAGTAATGGAATACAAATGCATTAGTATACGTTTTCTGTCATAGAATTGCAGGGTTTAGAGAGCACCATCACAATACTGTTTATTGTCTATGGTTTATTATTGCCTACTAATGGTAAATTCtttgcttttaattaaaaagtaaaccGTGTGCtttgtttaaagtttaatatgtattttacaCTTGCACATTTTCCTTAAACATGTTCGATttataatatgataaaaataaatgtaagcaAAAGACAGTTAAATCGAGTAACAGAACTACTACAAACATTGttgtacagtgccttgcataagtattcaccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925505.2 True 1422 mRNA 0.44 6 13705300 13710697

Neighbor

gene id symbol gene type direction distance location
abhd8a abhd8a,LOC108280232,LOC108439870,LOC107696148,LOC107754588,LOC107687901,LOC107596234,LOC103352801 coding downstream 1882 13693403 ~ 13703418 (-)
capsla LOC108280735,LOC108439882,LOC107552688 coding downstream 44120 13658694 ~ 13661180 (-)
im:7138239 LOC108280258,LOC108439873 coding downstream 105616 13594607 ~ 13599684 (-)
admp LOC108280256,LOC108439880,LOC107754609,LOC107687929,LOC107596296,LOC107696672,LOC105906921,LOC107750936 coding downstream 112634 13589569 ~ 13592666 (-)
LOC113533394 LOC108280525 coding downstream 316463 13386391 ~ 13388837 (-)
napgb napg,LOC107750913,LOC107696142,LOC105907026,LOC107687900 coding upstream 97078 13807775 ~ 13819461 (-)
acss2l LOC108280639,LOC108442433,LOC107750908 coding upstream 199168 13909865 ~ 13931138 (-)
LOC113533496 celf5,LOC108280171,LOC108444550,LOC107750904,LOC107696073,LOC107667861 coding upstream 431506 14142203 ~ 14336583 (-)
rxfp3.2a LOC108280335,LOC107729970,LOC107558276,LOC107667854,LOC107600262,LOC107696777,LOC107750939 coding upstream 691232 14401929 ~ 14404823 (-)
creb3l3b creb3l3 coding upstream 697755 14408452 ~ 14429093 (-)
G319766 NA non-coding downstream 75843 13629247 ~ 13629457 (-)
G319754 NA non-coding downstream 117769 13587091 ~ 13587531 (-)
G319674 NA non-coding downstream 276337 13428011 ~ 13428963 (-)
G319673 LOC108280701,LOC108433090,LOC105903982,LOC106600049,LOC107384124,LOC105020399 non-coding downstream 279348 13422351 ~ 13425952 (-)
G319606 NA non-coding downstream 396257 13305529 ~ 13309043 (-)
G319906 NA non-coding upstream 121158 13831855 ~ 13834798 (-)
G319974 NA non-coding upstream 229914 13940611 ~ 13945349 (-)
G319975 NA non-coding upstream 237611 13948308 ~ 13949723 (-)
G319995 rnf126,LOC107750906,LOC107569633,LOC107596227,LOC107754583 non-coding upstream 299212 14009909 ~ 14010528 (-)
G319999 NA non-coding upstream 301505 14012202 ~ 14012408 (-)
LOC113533556 LOC108280202 other downstream 25190 13665181 ~ 13680110 (-)
ccl25a NA other downstream 89557 13612516 ~ 13615743 (-)
LOC113533649 LOC108280860,LOC108433106 other downstream 777229 12908453 ~ 12928071 (-)
wu:fb63a08 LOC108280878 other downstream 1999423 11619876 ~ 11705877 (-)
ccl20a.3 LOC108261059 other downstream 3177021 10527282 ~ 10528279 (-)
theg NA other upstream 1021037 14731734 ~ 14745487 (-)
LOC113533479 LOC108280451 other upstream 1512081 15222778 ~ 15231580 (-)
LOC113533563 NA other upstream 1976385 15687082 ~ 15724356 (-)
G321462 NA other upstream 2646877 16357574 ~ 16367004 (-)
stk11 stk11 other upstream 2854011 16564708 ~ 16587816 (-)

Expression


Co-expression Network