ranbp3b (ranbp3,ranbp3b,LOC108439867,LOC107750915)


Basic Information

Item Value
gene id ranbp3b
gene name ranbp3,ranbp3b,LOC108439867,LOC107750915
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13636465 ~ 13658131 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925522.2
TGCTAGAAATAACGCCCGTGTGGcgcggtgcattgtgggtgtGCGCGGAGAAGTAAAATGGCGGACTTGGCAAACGAAGgaGAGAAGCCTGCCATAGCTCCTCCAGTGTTCGTGTTTCAAAAGGACAAGGCACAGAAGCGATCTGCTGATGGGTCCAGTGCAGAGGATGGGGAAGACTCAGACAGGGAGGATGGAGAATACTGTCCtccagtgaagagagagagaacctcGTCCTTAACACAGTTCCCACCTGCACATTCAGTTTCCAAGAATAATGTGTTTATGCCGTCAAGTTTCTGTCAGTCTCCAACAGGCAACTCAGACTCAGAACCAGAGGAGAAGCCAGTTGGATTTCGGTTGAAACCTCCAACTCTGATCCATGGTCAAGCACCGAGTGCAGGCTGTTTTTCAGGTGTACCCAGTCAGAAACCCAAGGAGCAGCAGCGCAGCGTCCTGAGACCTGCGGTCCTGCAGGCTCCACCCATCAAGACCCTTCCTGAGCCCAGCAAGAGCAACTCGAGCTGTGGAACAAATGGAGTGGGCAAGTTTTCAGAGGCAGCTACAGAAGGCCGGGCGATTTTCCTGAACAACACAGAGAGCTCAGACAAATCACCgAAGAAAGACAAGGAAGGAGGAGAGGATGACTTAGGAAAGACAGAGGAGAGCACACAAAAGAAGGATGTTGTGGTTGACCCTGGTTTCGTGTTTGGGCAGAATATCAAAGAAAGGGCAAAGTTGGATGAGAACAGCACAGTCAGTGAATCTAACGCCACACAGGACTCTCAGTCTGGGAGTACTAATTACTTCCTGCAGTACATGGGCACTTCAAGCTCTCTTAATGCTACGAACAACACAGACAAAGGAGCCAAGTTTGTGTTTGGCCAGAACATGTCAGAGCGAGTGCTGAGTCCTCCAAAAGGTGGTGAATCAACAGCAGAGGGCTGTAAAGACACAGCTTCAGCATCAGAACCCTCGTCACAGGAGACCACCCCAGAAAAGAATCACAGCGTGACAGAATCTCTAGAGGAATCGGCAGCAGCGTACACCAAAGCCACGGCCAAGAAGTGCATTTTGGAGAAAGTGGAGGTCCGCACTGGGGAGGAAGCAGAGAGCAATGTGTTGCAGATGCAGTGCAAGCTGTTCGTGTTTGATAAGCCAGCTCAGTCCTGGATCGAGCGAGGTCGAGGGCTGCTGAGACTCAACGACATGGCCTCTACCGATGATGGCACGCTACAGTCCAGGCTAGTGATGCGCACCCAGGGCAGTCTGCGGCTGATTCTGAACACTAAGCTGTGGCCTCAGATGCAGGTGGACAAGGCCAGCGAGAAGAGCGTCCGCATCACTGCCATGGACACAGAGGACCAGGGAGTGAAGGTCTTCCTCATATCGGCCAGCTCGAAGGATGCAGGGCAGCTGGCAGCAGCACTCCACCACCGCATCCTGGCCCTGCGGAGCCGCGCTGAGCAAGAGGCAGAGAGCACAGCCGAACCGCCCCACACCGAGATCACGCAATCCAATGAAGATGACAGCGATGATGACGTCGAGCTTgctaaaaacaacagcagcagcagcaacatcGCCCCTACAGGAAATACCACCGCCAGCGGCACTTCTGAAACCTCTGCCGAGGCACCGGCAGCTGAGAGCACATAACACCCTGGTCAGCCGCCTGACTAAAAACTGCtcaacagggttttttttgtgcaggCATCTGGGTGGACAGCCTTAACCACCGCAACACTTTCAGCCCAGCGCTGTGGGTCCTTCAGCTCCAGCCCTGTAGCAGAGCTCCAGCGTCTCTCACTTAAAACTCGTagttcattttttccccccttcctACATTTATTGTGAATCtggaattcaatatttttgtttttatcattttgttggcttttttggttttgttttagttttccGAGACtgcaaacaaactaaaaaaaaagaggaaaaaaaaaatagaaacagactTTTCCATTTAAGGGTTTGGACTTGGCTGCTCATCATATTGATGAGCGTGAGGGTattcctctctctgtgttaaGATACGGCACATGTCACAGCTGCAATTTCTACCACAGGATTTGTCTTTTAATTTCCTGCTGTCCCCTCACCCACTGTATTATTTTCTCCTAATCTCTCGTGCTCGGCTTCAGACCACCACTGTATGACATTATTGCTCAAAATTATCCAACATCCGTTCAGTACATTTTATGCCCTCAACCCAAAACCTTGCTGGACCTCaatcattctctttttttttttttttttttttttgggcatcTGAGTCTAACTCATTTCCAGTGGTTTCCCATAAACGAGTACTCCTACTAGTCTGCTATGATGGTAGTTAGATCTCTTATTGATATAATGAATAAAGGACTAAACCAACACATGGACTGTGCTATTGCTTCTCCAATTTTCCACCACTGAGAAGAAGATAAGAAAGGTAAAAGGGAATTAACTTTGGCCCCCTCACCATTATGGAATCACCAGAATCTGCCCTTTAGCTTTGCTTATGGACAGATATGGTTATTTCGGGTTTGATTTGaacaaaaaatactgaaattttAAATCAACATCTCTGCAGATATCCATGTTTATTTTCCATATTCTGAATGTTTGTAATATGTTaccttttttattgttttattaccttttttttttttttttatccatttccaTGTCATTGGAGACAGTACAGTggagatgattttttttgtgtgtgtgaaatactgAGTGCATTTAGAAACGTGAATACAGAACTTCTCATGTAAATTTCTATGAATATATTATCATTTACTAGAACATGTCTCCAATCTCCTTtacaaaacaaatagaaaaaaaatcaaagttaaaaaaggaaaagctttgaaataaattttttgtGTAATGTCA
>XM_026925524.2
CTGCTAGAAATAACGCCCGTGTGGcgcggtgcattgtgggtgtGCGCGGAGAAGTAAAATGGCGGACTTGGCAAACGAAGgaGAGAAGCCTGCCATAGCTCCTCCAGTGTTCGTGTTTCAAAAGGACAAGGCACAGAAGCGATCTGCTGATGGGTCCAGTGCAGAGGATGGGGAAGACTCAGACAGGGAGGATGGAGAATACTGTCCtccagtgaagagagagagaacctcGTCCTTAACACAGTTCCCACCTGCACATTCAGTTTCCAAGAATAATGTGTTTATGCCGTCAAGTTTCTGTCAGTCTCCAACAGGCAACTCAGACTCAGAACCAGAGGAGAAGCCAGTTGGATTTCGGTTGAAACCTCCAACTCTGATCCATGGTCAAGCACCGAGTGCAGGCTGTTTTTCAGGTGTACCCAGTCAGAAACCCAAGGAGCAGCAGCGCAGCGTCCTGAGACCTGCGGTCCTGCAGGCTCCACCCATCAAGACCCTTCCTGAGCCCAGCAAGAGCAACTCGAGCTGTGGAACAAATGGAGTGGGCAAGTTTTCAGAGGCAGCTACAGAAGGCCGGGCGATTTTCCTGAACAACACAGAGAGCTCAGACAAATCACCgAAAGACAAGGAAGGAGGAGAGGATGACTTAGGAAAGACAGAGGAGAGCACACAAAAGAAGGATGTTGTGGTTGACCCTGGTTTCGTGTTTGGGCAGAATATCAAAGAAAGGGCAAAGTTGGATGAGAACAGCACAGTCAGTGAATCTAACGCCACACAGGACTCTCAGTCTGGGAGTACTAATTACTTCCTGCAGTACATGGGCACTTCAAGCTCTCTTAATGCTACGAACAACACAGACAAAGGAGCCAAGTTTGTGTTTGGCCAGAACATGTCAGAGCGAGTGCTGAGTCCTCCAAAAGGTGGTGAATCAACAGCAGAGGGCTGTAAAGACACAGCTTCAGCATCAGAACCCTCGTCACAGGAGACCACCCCAGAAAAGAATCACAGCGTGACAGAATCTCTAGAGGAATCGGCAGCAGCGTACACCAAAGCCACGGCCAAGAAGTGCATTTTGGAGAAAGTGGAGGTCCGCACTGGGGAGGAAGCAGAGAGCAATGTGTTGCAGATGCAGTGCAAGCTGTTCGTGTTTGATAAGCCAGCTCAGTCCTGGATCGAGCGAGGTCGAGGGCTGCTGAGACTCAACGACATGGCCTCTACCGATGATGGCACGCTACAGTCCAGGCTAGTGATGCGCACCCAGGGCAGTCTGCGGCTGATTCTGAACACTAAGCTGTGGCCTCAGATGCAGGTGGACAAGGCCAGCGAGAAGAGCGTCCGCATCACTGCCATGGACACAGAGGACCAGGGAGTGAAGGTCTTCCTCATATCGGCCAGCTCGAAGGATGCAGGGCAGCTGGCAGCAGCACTCCACCACCGCATCCTGGCCCTGCGGAGCCGCGCTGAGCAAGAGGCAGAGAGCACAGCCGAACCGCCCCACACCGAGATCACGCAATCCAATGAAGATGACAGCGATGATGACGTCGAGCTTgctaaaaacaacagcagcagcagcaacatcGCCCCTACAGGAAATACCACCGCCAGCGGCACTTCTGAAACCTCTGCCGAGGCACCGGCAGCTGAGAGCACATAACACCCTGGTCAGCCGCCTGACTAAAAACTGCtcaacagggttttttttgtgcaggCATCTGGGTGGACAGCCTTAACCACCGCAACACTTTCAGCCCAGCGCTGTGGGTCCTTCAGCTCCAGCCCTGTAGCAGAGCTCCAGCGTCTCTCACTTAAAACTCGTagttcattttttccccccttcctACATTTATTGTGAATCtggaattcaatatttttgtttttatcattttgttggcttttttggttttgttttagttttccGAGACtgcaaacaaactaaaaaaaaagaggaaaaaaaaaatagaaacagactTTTCCATTTAAGGGTTTGGACTTGGCTGCTCATCATATTGATGAGCGTGAGGGTattcctctctctgtgttaaGATACGGCACATGTCACAGCTGCAATTTCTACCACAGGATTTGTCTTTTAATTTCCTGCTGTCCCCTCACCCACTGTATTATTTTCTCCTAATCTCTCGTGCTCGGCTTCAGACCACCACTGTATGACATTATTGCTCAAAATTATCCAACATCCGTTCAGTACATTTTATGCCCTCAACCCAAAACCTTGCTGGACCTCaatcattctctttttttttttttttttttttttgggcatcTGAGTCTAACTCATTTCCAGTGGTTTCCCATAAACGAGTACTCCTACTAGTCTGCTATGATGGTAGTTAGATCTCTTATTGATATAATGAATAAAGGACTAAACCAACACATGGACTGTGCTATTGCTTCTCCAATTTTCCACCACTGAGAAGAAGATAAGAAAGGTAAAAGGGAATTAACTTTGGCCCCCTCACCATTATGGAATCACCAGAATCTGCCCTTTAGCTTTGCTTATGGACAGATATGGTTATTTCGGGTTTGATTTGaacaaaaaatactgaaattttAAATCAACATCTCTGCAGATATCCATGTTTATTTTCCATATTCTGAATGTTTGTAATATGTTaccttttttattgttttattaccttttttttttttttttatccatttccaTGTCATTGGAGACAGTACAGTggagatgattttttttgtgtgtgtgaaatactgAGTGCATTTAGAAACGTGAATACAGAACTTCTCATGTAAATTTCTATGAATATATTATCATTTACTAGAACATGTCTCCAATCTCCTTtacaaaacaaatagaaaaaaaatcaaagttaaaaaaggaaaagctttgaaataaattttttgtGTAATGTCA
>XM_026925525.2
TGCTAGAAATAACGCCCGTGTGGcgcggtgcattgtgggtgtGCGCGGAGAAGTAAAATGGCGGACTTGGCAAACGAAGgaGAGAAGCCTGCCATAGCTCCTCCAGTGTTCGTGTTTCAAAAGGACAAGGCACAGAAGCGATCTGCTGATGGGTCCAGTGCAGAGGATGGGGAAGACTCAGACAGGGAGGATGGAGAATACTGTCCtccagtgaagagagagagaacctcGTCCTTAACACAGTTCCCACCTGCACATTCAGTTTCCAAGAATAATGTGTTTATGCCGTCAAGTTTCTGTCAGTCTCCAACAGGCAACTCAGACTCAGAACCAGAGGAGAAGCCAGTTGGATTTCGGTTGAAACCTCCAACTCTGATCCATGGTCAAGCACCGAGTGCAGGTGTACCCAGTCAGAAACCCAAGGAGCAGCAGCGCAGCGTCCTGAGACCTGCGGTCCTGCAGGCTCCACCCATCAAGACCCTTCCTGAGCCCAGCAAGAGCAACTCGAGCTGTGGAACAAATGGAGTGGGCAAGTTTTCAGAGGCAGCTACAGAAGGCCGGGCGATTTTCCTGAACAACACAGAGAGCTCAGACAAATCACCgAAGAAAGACAAGGAAGGAGGAGAGGATGACTTAGGAAAGACAGAGGAGAGCACACAAAAGAAGGATGTTGTGGTTGACCCTGGTTTCGTGTTTGGGCAGAATATCAAAGAAAGGGCAAAGTTGGATGAGAACAGCACAGTCAGTGAATCTAACGCCACACAGGACTCTCAGTCTGGGAGTACTAATTACTTCCTGCAGTACATGGGCACTTCAAGCTCTCTTAATGCTACGAACAACACAGACAAAGGAGCCAAGTTTGTGTTTGGCCAGAACATGTCAGAGCGAGTGCTGAGTCCTCCAAAAGGTGGTGAATCAACAGCAGAGGGCTGTAAAGACACAGCTTCAGCATCAGAACCCTCGTCACAGGAGACCACCCCAGAAAAGAATCACAGCGTGACAGAATCTCTAGAGGAATCGGCAGCAGCGTACACCAAAGCCACGGCCAAGAAGTGCATTTTGGAGAAAGTGGAGGTCCGCACTGGGGAGGAAGCAGAGAGCAATGTGTTGCAGATGCAGTGCAAGCTGTTCGTGTTTGATAAGCCAGCTCAGTCCTGGATCGAGCGAGGTCGAGGGCTGCTGAGACTCAACGACATGGCCTCTACCGATGATGGCACGCTACAGTCCAGGCTAGTGATGCGCACCCAGGGCAGTCTGCGGCTGATTCTGAACACTAAGCTGTGGCCTCAGATGCAGGTGGACAAGGCCAGCGAGAAGAGCGTCCGCATCACTGCCATGGACACAGAGGACCAGGGAGTGAAGGTCTTCCTCATATCGGCCAGCTCGAAGGATGCAGGGCAGCTGGCAGCAGCACTCCACCACCGCATCCTGGCCCTGCGGAGCCGCGCTGAGCAAGAGGCAGAGAGCACAGCCGAACCGCCCCACACCGAGATCACGCAATCCAATGAAGATGACAGCGATGATGACGTCGAGCTTgctaaaaacaacagcagcagcagcaacatcGCCCCTACAGGAAATACCACCGCCAGCGGCACTTCTGAAACCTCTGCCGAGGCACCGGCAGCTGAGAGCACATAACACCCTGGTCAGCCGCCTGACTAAAAACTGCtcaacagggttttttttgtgcaggCATCTGGGTGGACAGCCTTAACCACCGCAACACTTTCAGCCCAGCGCTGTGGGTCCTTCAGCTCCAGCCCTGTAGCAGAGCTCCAGCGTCTCTCACTTAAAACTCGTagttcattttttccccccttcctACATTTATTGTGAATCtggaattcaatatttttgtttttatcattttgttggcttttttggttttgttttagttttccGAGACtgcaaacaaactaaaaaaaaagaggaaaaaaaaaatagaaacagactTTTCCATTTAAGGGTTTGGACTTGGCTGCTCATCATATTGATGAGCGTGAGGGTattcctctctctgtgttaaGATACGGCACATGTCACAGCTGCAATTTCTACCACAGGATTTGTCTTTTAATTTCCTGCTGTCCCCTCACCCACTGTATTATTTTCTCCTAATCTCTCGTGCTCGGCTTCAGACCACCACTGTATGACATTATTGCTCAAAATTATCCAACATCCGTTCAGTACATTTTATGCCCTCAACCCAAAACCTTGCTGGACCTCaatcattctctttttttttttttttttttttttgggcatcTGAGTCTAACTCATTTCCAGTGGTTTCCCATAAACGAGTACTCCTACTAGTCTGCTATGATGGTAGTTAGATCTCTTATTGATATAATGAATAAAGGACTAAACCAACACATGGACTGTGCTATTGCTTCTCCAATTTTCCACCACTGAGAAGAAGATAAGAAAGGTAAAAGGGAATTAACTTTGGCCCCCTCACCATTATGGAATCACCAGAATCTGCCCTTTAGCTTTGCTTATGGACAGATATGGTTATTTCGGGTTTGATTTGaacaaaaaatactgaaattttAAATCAACATCTCTGCAGATATCCATGTTTATTTTCCATATTCTGAATGTTTGTAATATGTTaccttttttattgttttattaccttttttttttttttttatccatttccaTGTCATTGGAGACAGTACAGTggagatgattttttttgtgtgtgtgaaatactgAGTGCATTTAGAAACGTGAATACAGAACTTCTCATGTAAATTTCTATGAATATATTATCATTTACTAGAACATGTCTCCAATCTCCTTtacaaaacaaatagaaaaaaaatcaaagttaaaaaaggaaaagctttgaaataaattttttgtGTAATGTCA

Function

symbol description
ranbp3b Predicted to contribute to GTPase activator activity. Predicted to be involved in protein export from nucleus. Predicted to act upstream of or within intracellular transport. Predicted to be part of nuclear pore. Predicted to be active in cytoplasm. Orthologous to several human genes including RANBP3 (RAN binding protein 3).
ranbp3 Enables R-SMAD binding activity and small GTPase binding activity. Predicted to be involved in protein export from nucleus. Located in nucleoplasm.

NR:

description
PREDICTED: ran-binding protein 3 isoform X2

GO:

id name namespace
GO:0046907 intracellular transport biological_process

KEGG:

id description
K15304 RANBP3; Ran-binding protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925522.2 True 2895 mRNA 0.46 17 13636466 13658131
XM_026925524.2 False 2893 mRNA 0.46 17 13636465 13658131
XM_026925525.2 False 2883 mRNA 0.46 17 13636466 13658131

Neighbor

gene id symbol gene type direction distance location
LOC113533215 LOC108280868 coding upstream 49390 13571709 ~ 13587075 (+)
LOC113533157 LOC108280702,LOC108433088 coding upstream 71262 13437035 ~ 13565203 (+)
fem1a LOC108280701,LOC108433090,LOC105903982,LOC106600049,LOC107384124,LOC105020399 coding upstream 210499 13422324 ~ 13425966 (+)
LOC113533546 LOC108280911,LOC105904033,LOC106599985,LOC105020641,LOC106569538,LOC103047033 coding upstream 225654 13390167 ~ 13410811 (+)
prkab2 prkab2,LOC108280523,LOC108433095,LOC102781441,LOC101470867,LOC100694198 coding upstream 331028 13299508 ~ 13305437 (+)
LOC113533233 piezo2,LOC108414168 coding downstream 62835 13720966 ~ 13807258 (+)
rab12 rab12,LOC107696134,LOC107750912 coding downstream 162534 13820665 ~ 13834815 (+)
ndufv2 ndufv2,LOC107596229,LOC107754586,LOC107696125 coding downstream 274515 13932646 ~ 13947792 (+)
ankrd12 ankrd12,LOC108280287 coding downstream 291595 13949726 ~ 13985056 (+)
twsg1a twsg1,tws1a,LOC106579643 coding downstream 330472 13988603 ~ 14003700 (+)
G319755 LOC108280256,LOC106569623,LOC108439880,LOC107687929,LOC107754609,LOC107596296 non-coding upstream 46149 13589599 ~ 13590316 (+)
G319415 NA non-coding upstream 125738 13505106 ~ 13510727 (+)
LOC117599983 NA non-coding upstream 215082 13418555 ~ 13421383 (+)
G319382 NA non-coding upstream 224858 13363825 ~ 13411607 (+)
G319342 NA non-coding upstream 330322 13239147 ~ 13306143 (+)
G319867 NA non-coding downstream 198834 13856965 ~ 13894441 (+)
LOC117595740 NA non-coding downstream 246396 13904527 ~ 13910280 (+)
G319886 NA non-coding downstream 250732 13908863 ~ 13909635 (+)
LOC117595739 NA non-coding downstream 253440 13911571 ~ 13919146 (+)
G320003 NA non-coding downstream 359810 14017941 ~ 14018154 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other upstream 481938 13021142 ~ 13154527 (+)
G319170 NA other upstream 833446 12765055 ~ 12803019 (+)
G318439 NA other upstream 2166966 11467299 ~ 11469499 (+)
per2 LOC108280459,LOC108439864 other upstream 2171696 11399884 ~ 11464769 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other upstream 2902377 10730346 ~ 10734088 (+)
LOC113533270 mtcl1 other downstream 179302 13837433 ~ 13897914 (+)
zmp:0000000521 zmp:0000000521,LOC108280721,LOC107696078,LOC108442439,LOC107596226,LOC105888700 other downstream 422118 14080249 ~ 14127012 (+)
rab31 rab31 other downstream 728107 14386238 ~ 14466753 (+)
tle2c zgc:136336,LOC108280589,LOC108427215 other downstream 979650 14637781 ~ 14666508 (+)
ly97.3 LOC108280687 other downstream 1169111 14827242 ~ 14828778 (+)

Expression


Co-expression Network