LOC113533391 (LOC108280648,LOC108427199)


Basic Information

Item Value
gene id LOC113533391
gene name LOC108280648,LOC108427199
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16460810 ~ 16468366 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925526.2
acccaaaacccaGCTCTTCAGAATTGAGATGACTCTGAGTTGATATATTAGGTGAGTGACACATCACTAACTACTAGATAGTAACTAGTAAGAAAAGCCTGTACAACtgtagcctccagtttagcatcatgcaaGTTGCATatctaaatcatcacactttCCTGTGGTGAGTTGTTCAGGATCCCAAACATATGTATATTGTTTCTTACTCTGTACAGCATacttatcttaaaaaaaaaaaaaaaagctaaaacaaaTATGTAGCTCTTAAGTTTGAAGAAAAGTGATTTGATATTATAGTTCTAATTTGATAGAGAATTTTTTCCCTAACAGACTTGTTCTGCTAATTTAGGAAACTATTTATGTACATATTACTTAGCCAACCAAGACACAAATTTTTCATGATGCTAATctggtagctataagcttcAATTATTTGTTAGCACACTATCCTCATAGCTTTAATGCAAATCAGATGCACATTTTTGGCTGATTGACGTGAATGGAGTGCAGTCATGAACTCATCCAGTGTCTGTACCAGGAGAAAAAGTCactgagaataaaaaaagagtcacaaaacttacttttcttcttcccatgatcttcaggtattcctgttgaacatgtgatttattccaaatatttcgCAGGGGTGAAGTGTGTTGAGGTAACAGGGTGATTGGGTATTGTGAAACTTAAATGGACATTTTTCATAATAGgtaatggatgactcatggaaaagaATGTTTCATGCATGAGATCTTacatggattcacacattactgcaaaaataacattttaatgattatttccAGGCAGAAATTTAGATATAGTGGGCTATAGGTTTTATTacctgtgtttaaataaaacctatagctttacataaatatttgaaaatgttatttcagtgggacacaaatgaCATACAATCATGATTCACATTGTTATCTTACTTCTCTCTTGACATTGTACTGTTGATTAATAGAGCTTATCAGGAATAATATACTTCTCCTcaaacacactttatacacactacATTTCCTCTGGTGTCCCTCAGCATGCAGGTTCCACCCCCTTTGTGTGCTCAGCCAATCAACAGCCTCCCTATTTTCCTCTCATCTACCTGGTTAATGAAGTGATACTGTTAAGGTGAGAGGAGTGctacagaaaatacatttttacattggTGCTCTGGAAATCTGGTTCGAGATTGACAGAACAGGCACATCGtaaagctctgaaacacataAACTGCAGTGAAGGAGATGAACCACAGCAGTGCTGATCAGGACTGTGATTCTACACAGATGCTGCACTACCTCAGTAAAGAGGAGGTTGTTGCCATGGAGATGGAGTTGCTGAGGGACTATCACTTTGGTCTGCATCAGCTGACAGAAATTTTAGGCCATGCCTGTGCTGTTGCCATCACAAAGACGTACCCGCTGAGCACTCTGGGAAAGAGGCAGCCCACTGTACTAGTGGTGTGTGGGCCAGATCAGAACGGCTGCATCGGCCTGGCATGTGCACGCTATCTGAGATTATTTGAATACATGCCCACTGTCTTCTACCCAAAACGGTCCTCACAAAGTCCTCACCTGGACTTCACTGTACAGTGTGAAAAAATGGACATCCCCTTCCTGTCCTACCTGCCCACAGAGGTGCAGCTTATAAACGATGCATATAACCTGGTGGTGGATGCACTGCTGGGTCCAGAGACAGAACTGGGAACAGCAGAAGAACCCTTCACCAGCATCATGCTTACTCTCCGCGGGGTCAAAATCCCCATCGCCAGCCTCGACATCCCTTCagGTTGGGACCCTGATGAAGCCAGCAGCAATGGGATTAATCCTGACGTCCTCATCTCTCTGATGGCACCAAAGAGATGTGCACTCAGTTTCTCTGGGATACATTTACTCGCTGGACGCTTACTGCCCTACGATATTCAGAAGAAATATGAGCTCAACCTACCCAAGTTCCCCAGTACAGCCTGTATTACTGAGCTCCACTAACAAGTCTGTACACGACTTTCAGTAAACCTCATTAGCAGTCACATCCTAGTagcttttgtttgtgtgtatgggtgGGAAATAAAAAGTCACTGTATGTGGAGAATGTATTTTATTGCTGTAATGGTGATACCTGTAGCACAGAAAGATGTGCTTCCtgtttacagtaataaaaaaaatgctgtatggCCAATTTACTGTCTACAAAATGGTAATTAAATTTCATGTGTTGTGTAAACACAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925526.2 True 2250 mRNA 0.40 6 16460810 16468366

Neighbor

gene id symbol gene type direction distance location
ndufa13 ndufa13,LOC102786334 coding upstream 430 16457677 ~ 16460380 (+)
LOC113533360 LOC108280712,LOC108427196 coding upstream 4824 16425377 ~ 16455986 (+)
mau2 mau2 coding upstream 41402 16404788 ~ 16419408 (+)
sugp1 sugp1,LOC107729615,LOC107563402,LOC100304763 coding upstream 56243 16395828 ~ 16404567 (+)
rab8a rab8a,LOC107687930,LOC107696202,LOC103479775 coding upstream 75589 16376170 ~ 16385221 (+)
LOC113533302 LOC108280185,LOC108427202 coding downstream 73968 16542334 ~ 16565021 (+)
LOC113533121 kcnj10,LOC108280182 coding downstream 152317 16620683 ~ 16629472 (+)
tgm1l1 LOC108280800 coding downstream 215290 16683656 ~ 16706323 (+)
LOC113533288 dad1,LOC103040403,LOC107687594,LOC107726313 coding downstream 246033 16714399 ~ 16717207 (+)
LOC113533485 LOC108280611,LOC108261562,LOC108280616,LOC108261605 coding downstream 250450 16718816 ~ 16740603 (+)
G321435 NA non-coding upstream 3642 16456443 ~ 16457168 (+)
G321434 NA non-coding upstream 14686 16436199 ~ 16446124 (+)
G321429 NA non-coding upstream 74287 16386257 ~ 16386523 (+)
trnag-gcc_20 NA non-coding upstream 273769 16186971 ~ 16187041 (+)
LOC117599979 NA non-coding upstream 273807 16185620 ~ 16187003 (+)
G321454 NA non-coding downstream 125831 16594197 ~ 16600593 (+)
G321563 NA non-coding downstream 198064 16666430 ~ 16703816 (+)
G321584 NA non-coding downstream 277410 16745776 ~ 16755230 (+)
G321582 NA non-coding downstream 281794 16750160 ~ 16792097 (+)
G321589 NA non-coding downstream 291476 16759842 ~ 16772449 (+)
G321257 LOC108280695 other upstream 328446 16131335 ~ 16132364 (+)
si:ch211-178n15.1 LOC108280694 other upstream 340777 16112035 ~ 16120033 (+)
jund jund,LOC108280549 other upstream 349721 16100533 ~ 16111089 (+)
gpx4b gpx4b,gpx4,LOC107552704,LOC107723219,LOC103364371,LOC102207447 other upstream 524037 15929947 ~ 15936773 (+)
G321088 NA other upstream 589815 15869016 ~ 15870995 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other downstream 274439 16742805 ~ 16748340 (+)
LOC117599973 LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616 other downstream 288265 16756631 ~ 16788968 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other downstream 323036 16791402 ~ 16793698 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other downstream 370402 16838768 ~ 16859682 (+)
fuz fuz other downstream 1010468 17478834 ~ 17483677 (+)

Expression


Co-expression Network