LOC113533394 (LOC108280525)



Basic Information


Item Value
gene id LOC113533394
gene name LOC108280525
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13386391 ~ 13388837 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_026925528.2
GCATGAGCCACTGTATGCGCTGTTTACCGCAGAAGAAGATGCTAACCAGAAACGTTGCCAGATTAAAGACATGTTACCTGAATTTAATATATAACCTAAGGTTTTTATCGACTCTGAAAAGATAAAAGtaagataacaaaaaaaagctataaTGGCGAGCGAGGAGGCGCTGAAGTCTGTCATGTTTACGCTAAGCTACATGCTAATGAAGCGGCGCAGGGACATAAACaatgcagagacacagagacggCGTGAAGTTCAGCGGCGGGTCAGACACAGGCAATACTTCCtacagagacagaggaggatGCTTATGATGCTGCTAGCTCAAGGTACACGCCCCATCACTGTAGCTCGCACTCGTGCTTGGTCCAACACGCCAAGCTCTGATTGGTGGGAGCGAGTGGTCCTGACAGAATTCCAgccctctgattggctggagcGCTTCCGTATGAGCAAAGAGACCTTCTTTCACCTTTGCAACAAGCTGAAGCCCTGGTTGGCACGACAGGACACGTGTCTGCGCCCTGCTCTACCCCTTGAGAAGAGGGTGGCCTTGGTACTGTGGCGCCTGGCCTCAAACGTCGAGTACCGCACCATTGGGGAGCTGTTTGGAGTGGGACGCTCAACTGTGTGCAAGTGCGTGCGTGAGGTGTGCCATGCCATTGGAGCCACGCTGCGCCCACTCTACCTCCGTGAGCCGAGTGAACAGGAGCTGGAAGACGCCGCACGCCTGTTTAGCACTCGCTGGGGCTTTCCGCACTGCGTTGGCGCCGTCAGCAGCCTCCACGTGCCCATCATTGCGCCAGCCACTGATGCTGATAGCTACTGGAACAGCCGTGGTTGGCATTCGGTCATTACCCAAGGTGCAGTTAATGGTCTCGGGCAATTCTGGGATGTGTGTGCAGGCTTTCCAGGTGGCTCCGAACCCGCATCCATTCTGCAAAACTCCTCTCTGTGGACTCTGGGGTGTGAAGGCAGGCTACTACCCCAGTCTCTACCTCGAAACTTCATGGGCAAGCAGTTGGGGTCTGTAGTCCTGGGGGATGCTGGGTATCCTCTTCAGACCTGGTTACTGAAAGCTTACGACAAGTCAGACAATCTCACGGCTGGGCAGCGTGCGTTCAACCGGCGCCTGGAGAGAGCACATGCCATCGTGGACGAGGCATTCCTGAGGCTCAGGGCACGCTGGCAGTGCCTTTTAAAGAGGAACGATTGCCACGTAGACGGGGTGCCAGCCATGATCGTGGCATGCTGCGTGTTGCACAATATGTGCGAGGTGCACGGCGATGAGTTGGCAGAGGAGTGGCTGGAGGCAGCGAGGCGGGAGGAGAGCCCCATGCCCACTCACATGGTGCCTGTCTTGGATGACGATCCAGCCGGGGAGGAAGTGCGAGAACTTTACTGTCAGTATTTCCTACAGCAGGAGCATCAGCAGAACCAGCAAGAGCAACAAGACTGAAGCAGGGTCTCTACCAACTTGTATGAATTCGCTGTTTTGTGAACGCTAGAGATTTGCAGCATTTAggagatgctcttatccagagagacttacagaagtgcgTTGGTACAACAGCGTGATGAGGCTGAACTTTATAAGGTTGAACCCCAtatcttgttgttgttgttgttgttgttgttttcttgaAAGTTCGCATTTTCAGAATTTAGATTTGCTGTACTGTGAATATTTCTTAGTGCAAGAGATTGGTAAAGACCGACTAGAGCAACAAGACTGAAAAGGGATTTCATTCCATCGCTTTTTATGCCAAGTTTAAATTTGTGCATAAGAAACATTAATAGAAACAGCATACCTACTAAAAAAGCCCAAAAATCACACTtacattgactttttttcacagtttcacTACAGCCTACTGTGGTGTTCTTCATAATATTTAATTGAAGGgacaaatatttacattataattcacattaaaataaacaaatcatgatAATAGGAACATTATCTAATAAAGCATATTAACAAATATAATTTGCTTTTGTAGGTCACTATCAATAGTAGCATTTTGATAGCATTTCACTCGGGTCCCCGTGGTTTGTGTCGTGGCAGCTGTGCTTATGGGGATTTAGATTAATAGTGGCTCTGAGTCCAGATTCAACAATGTAGAAGATTATATTGTTGCCATTTATATTTTGTGGGtttgaataaagaaatataCTTCAAATTGAAAATTA

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_026925528.2 True 2199 mRNA 0.48 2 13386391 13388837

Neighbor


gene id symbol gene type direction distance location
LOC113533154 pde4dip coding downstream 9213 13306777 ~ 13377178 (-)
cactin cactin,LOC103479278,LOC103479458 coding downstream 91413 13285372 ~ 13294978 (-)
LOC113533516 NA coding downstream 221174 13161536 ~ 13165217 (-)
cdc34b ub2r1,cdc34b,LOC108280790,LOC108433104,LOC105020474 coding downstream 386404 12986262 ~ 12999987 (-)
kcnj9 kcnj9,LOC108280861,LOC108433105,LOC107698496,LOC107713649,LOC107600231,LOC107757805,LOC107599257 coding downstream 421610 12940528 ~ 12964781 (-)
admp LOC108280256,LOC108439880,LOC107754609,LOC107687929,LOC107596296,LOC107696672,LOC105906921,LOC107750936 coding upstream 200732 13589569 ~ 13592666 (-)
im:7138239 LOC108280258,LOC108439873 coding upstream 205770 13594607 ~ 13599684 (-)
capsla LOC108280735,LOC108439882,LOC107552688 coding upstream 269857 13658694 ~ 13661180 (-)
abhd8a abhd8a,LOC108280232,LOC108439870,LOC107696148,LOC107754588,LOC107687901,LOC107596234,LOC103352801 coding upstream 304566 13693403 ~ 13703418 (-)
LOC113533381 LOC108280169,LOC108439884,LOC100333521,LOC107696163 coding upstream 316463 13705300 ~ 13710697 (-)
G319606 NA non-coding downstream 77348 13305529 ~ 13309043 (-)
G319568 NA non-coding downstream 242120 13144063 ~ 13144271 (-)
G319559 NA non-coding downstream 249802 13136385 ~ 13136589 (-)
G319557 NA non-coding downstream 250531 13135604 ~ 13135860 (-)
G319544 si:ch211-168n16.1,LOC108433102,LOC108280795,LOC107713651,LOC107600229,LOC107757803,LOC107662975 non-coding downstream 267280 13118788 ~ 13119111 (-)
G319673 LOC108280701,LOC108433090,LOC105903982,LOC106600049,LOC107384124,LOC105020399 non-coding upstream 33514 13422351 ~ 13425952 (-)
G319674 NA non-coding upstream 39174 13428011 ~ 13428963 (-)
G319754 NA non-coding upstream 198254 13587091 ~ 13587531 (-)
G319766 NA non-coding upstream 240410 13629247 ~ 13629457 (-)
G319906 NA non-coding upstream 443018 13831855 ~ 13834798 (-)
LOC113533649 LOC108280860,LOC108433106 other downstream 458320 12908453 ~ 12928071 (-)
wu:fb63a08 LOC108280878 other downstream 1680514 11619876 ~ 11705877 (-)
ccl20a.3 LOC108261059 other downstream 2858112 10527282 ~ 10528279 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other downstream 4413116 8969204 ~ 8973275 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other downstream 4432281 8903824 ~ 8954110 (-)
ccl25a NA other upstream 223679 13612516 ~ 13615743 (-)
LOC113533556 LOC108280202 other upstream 276344 13665181 ~ 13680110 (-)
theg NA other upstream 1342897 14731734 ~ 14745487 (-)
LOC113533479 LOC108280451 other upstream 1833941 15222778 ~ 15231580 (-)
LOC113533563 NA other upstream 2298245 15687082 ~ 15724356 (-)

Expression



Co-expression Network