lig1 (lig1)


Basic Information

Item Value
gene id lig1
gene name lig1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10003656 ~ 10034015 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925529.2
GACGTCACTTTGGCGCCGAATTGTTCGCCTTTGAGCGCGCATATTCAGCTACTTCCGCGAATGACGACATTCTACAGTGAAAAATTACTGAAAGTTTAATATTCTGAAGGGATTTTTACTTTGCATTAAACATGCAGCGAAGTATATCGTCCTTCTTTCAGCCAATGAAGTGTAAGGAGAAGGATGGCATGCCCAAAGGGAAATCTGAGTCAGTTAAAAGCCCCCTCAAACCTCAGAATATTGATCAGGAATGTGATTCACCAGTGAAGACAAGTAAGCGGAACCGAGCAATCATAGACAGTGATGATGAAGAGCAGCAGATGGTAAAAGAAGAGGCTTTCCagcaaaatggaaaacaaacagCCACACCAGGCTGTGAGAAGGTTGGCCTTGTTAAGGATACGGCCAGTCCACTCTCACCAAAGCCCCTTGTTACCCCGACAAGTCCTACTGTTTCGGTAGCTTCTGGCACTCCTGAAACGCCTGTTACCCCGAATTCCACTTCACCCTCCTTCATTCCAAAACGCAAGACTGcCCGTAAACAGTTTCCCAAGAGGAAATTGGACGGCAGGAGTGATGAAGAGCgagaaaaagaggaggaaggaaaagagacagagggaggacaGGAGAGTAAACGAGCAAGAATAGAAGGATCTCCTGAAAAGATGGGAATTGATGAAGAGGCTATGGAGGTGGagcaaaataacagaaatactGTGGAGAAAGAACTACTGAAAGCAAAGGATCAGGGAAACATGAATGTGACTAATGctgaaaaagagaataaaaaacaaagtgatGAAAAGGAAACTGAACAGGAAGGAGAGAAGTATGAAGTGAATGGGAACAATAAAGGAATGAAAAAGGTAACGAAGGAGGAAAAATGCAGTCCTGAAAGAGTGATGAAGAAATTGAAGGATGTAGAAGAGGAGAAGATAGAGGGATCTGCTAAGAAAAAAGCCATCAACAGTTTTTTTGCACCCAGAAAAGCTGCAATGAAGCTGGAAAAATCAGAAGAGAAAAGTAATGTAGAGAAGAAGGATGGCGAGAAGCCTGCGGCTGCTACTACTTctgaggagaaagaaaagaagtgTGAGAAGGATGTAGAACCTGCAAACCAGAGCCAATATGATCCTTCTAAAGCTCACTACCATCCCATTGATGATGCTTGCTGGAGGAAGAGGCAGAGAGTTCCATATCTGGCTGTTGCGCGAACCTTTGAGAAGATTGAGGAAGATTCGGGCAGGTTGAGAAACATTGAGACTCTGTCCAACTTTCTGCGATCTGTTATCCTACTCTCTCCAGATGACCTCTTGTgctgtgtgtacctgtgtctGAATCAGCTTGGCCCCGCCTACCAGGGGCTAGAGCTAGGTGTAGGGGAAACAGTACTGATGAAAGCTGTTGCCCAGGCGACTGGGCGTCAACTGGACAAAATCAAGACAGAGGCCCAGGAAAAAGGTGACCTGGGATTGGTAGCGGAGAGTTCCCGTAGCAACCAGAGAATGATGTTTGCACCAGCGAATCTGAGTGCAGTGGGCGTGTTCAGCAAACTGAAGGAGATTGGCAATATGAGCGGAAACTCTGCAATGAATAAGAAAATTGACATCATTAAGGGTCTGTTTGTGGCTTGTCGTTTCTCTGAGGCCAGATACATTGTGAGGTCACTGGCAGGCAAACTGAGGATTGGATTGGCTGAGCAGAGTGTTTTAGCAGCTCTGAGTCAAGCAGTATGTCTGAGTCCACCAGGTCAAGAATTCCCGCCAGCTGTGATTGATGCAGGAAAGGGGATGAGTGCAGACAGCAGGAGAGCATGGCTTGAGGAAAAAGGACTCATCCTTAAGCAGACTTACTGTGAAATGCCAAATTATGATGTCATCATCCCTGTCATGTTGAGGTTGGGCATAGATGAACTGCCTAATCACTGCAAACTTACTCCAGgTGTGCCACTGCGCCCCATGCTGGCCCACCCAACTAAGGGAGTAGGGGAGGTGATGAAAAGGTTTGATGAGGCTGCTTTCACCTGCGAATACAAGTATGATGGAGAGagagcacagATTCACATTCTTGAGAGTGGTGAGGTTCGTATCTTCAGCCGAAACCAAGAGGACAACACCAGCAAATACCCTGACATCATTTCACGGATCCCACAGATAAAGAAGGAATCTGTGCTTAGCTGTGTGTTGGACTCAGAGGCGGTTGCatgggacagagagaaaaagcagatTCAGCCCTTTCAAGTTCTTACCACACGCAAAAGGAAGGATGTGGATGCATCTGAGATTAAGGTGCAGGTTTGTGTGTATGCCTTCGACCTGCTGTACTTAAATGGAGAGtctcTAGTACGGGAGCCATTGAGCAAGCGTCGAGCTTTGTTAAGGAAGAGTTTCatggagaaggagggagagtTTGTCTTCGCTCGTTCTCTCGACTCTAATAACACTGAAACTATAGCAGAGTTCCTGGAGCAGTCCATACGAGACTCTTGCGAAGGCTTGATGGTGAAGACCCTGGAGAAAGATGCCACTTACGAAATTGCCAAACGCTCTCATAACTGGCTTAAGCTGAAGAAGGACTATTTGGAAGGTGTGGGGGATACAGTGGatctgtgtgtgattggtgCATATCTAGGGAAGGGCAAGAGAGCCGGTAGCTATGGGGGTTTCCTGCTTGGTTGCTATGATGAAGAGAATGAGGAGTTTCAGGCTGTCTGTAAGATAGGAACAGGCTTCAAAGATGAAGATCTGGagcagcattacaatttcttaaagGAACACATCCTTCCTAAGCCCCGCCCCTACTACAGAGTGGATCAATCTGCAGAGCCAGATGTTTGGCTGGATGCTGTACAAGTGTGGGAAGTGAAATGTGCTGATCTGTCACTGTCTCCGGTGTACAAAGCAGCAATGGGATTGGTGGACCCAGACAAAGGGATTTCCCTTCGCTTTCCTCGATTCCTTCGCATCAGAGATGACAAGAAACCAGAGGATGCTACTACAGGAGCGCAGattGCTGATCTCTACAGAAAGCAGCAGCAGATTCAGAATCAAGGAGAAAAGGATGATCTAGAGGATTACTACTGATCTCTGCCTTCTGATTGGCTCCTGCAGTCTCAGATTTATTCGCAGCTGTATAAAGTTTAGGCAGACTATTCATGCAGGCTGTATCATTTAATGAttacttttttgtttctgtaattattttaaatgaaagtacAAATCAGAATTGTACATAGGACATAgtctttaaaataaagaaataaacctTTTATAAACTGCT

Function

symbol description
lig1 Predicted to enable DNA ligase (ATP) activity. Predicted to be involved in DNA ligation and Okazaki fragment processing involved in mitotic DNA replication. Predicted to act upstream of or within DNA metabolic process and DNA replication. Predicted to be active in mitochondrion and nucleus. Human ortholog(s) of this gene implicated in inherited metabolic disorder and primary immunodeficiency disease. Orthologous to human LIG1 (DNA ligase 1).

NR:

description
PREDICTED: DNA ligase 1 isoform X1

GO: NA

KEGG:

id description
K10747 LIG1; DNA ligase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925529.2 True 3279 mRNA 0.46 27 10003656 10034015

Neighbor

gene id symbol gene type direction distance location
LOC113533165 LOC108280405,LOC100705068 coding upstream 14612 9981186 ~ 9989044 (+)
dnaaf6 pih1d3 coding upstream 51336 9943753 ~ 9952320 (+)
fndc7a LOC108280340 coding upstream 142508 9829378 ~ 9861148 (+)
LOC113533145 NA coding upstream 175768 9788997 ~ 9827888 (+)
LOC113533645 arhgap12,LOC108280343 coding upstream 361012 9532677 ~ 9642644 (+)
mpz mpz,LOC106600490 coding downstream 8873 10042888 ~ 10053540 (+)
atp1a2a atp1a2a,LOC108261056,LOC108428278,LOC107692876,LOC107749099,LOC107721700 coding downstream 27211 10061226 ~ 10130722 (+)
sdhc sdhc coding downstream 139805 10173820 ~ 10186067 (+)
trnar-ucu_12 NA coding downstream 153736 10187751 ~ 10187824 (+)
cadm3 cadm3,LOC107749121,LOC107600075 coding downstream 162093 10196108 ~ 10288224 (+)
G317633 NA non-coding upstream 63419 9939969 ~ 9940237 (+)
G317621 NA non-coding upstream 123900 9878915 ~ 9879756 (+)
G317618 NA non-coding upstream 127836 9874996 ~ 9875820 (+)
G317529 NA non-coding upstream 184191 9819266 ~ 9819465 (+)
G317526 NA non-coding upstream 187999 9815277 ~ 9815657 (+)
G317703 NA non-coding downstream 71751 10105766 ~ 10106921 (+)
G317754 NA non-coding downstream 123262 10157277 ~ 10157530 (+)
G317761 NA non-coding downstream 152291 10186306 ~ 10187126 (+)
G317939 NA non-coding downstream 470148 10504163 ~ 10510193 (+)
LOC117599937 NA non-coding downstream 483573 10517588 ~ 10520208 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other upstream 25740 9958993 ~ 9977916 (+)
G317390 NA other upstream 588492 9412323 ~ 9415164 (+)
LOC117599964 LOC107387363,LOC107676291,LOC107756568 other upstream 1190246 8811595 ~ 8813410 (+)
G316745 NA other upstream 1734458 8268709 ~ 8269198 (+)
G316744 NA other upstream 1739595 8263339 ~ 8264061 (+)
capn10 capn10 other downstream 502416 10536431 ~ 10562994 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other downstream 529806 10563821 ~ 10568907 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other downstream 696331 10730346 ~ 10734088 (+)
per2 LOC108280459,LOC108439864 other downstream 1365869 11399884 ~ 11464769 (+)
G318439 NA other downstream 1433284 11467299 ~ 11469499 (+)

Expression


Co-expression Network