sf3a2 (sf3a2)


Basic Information

Item Value
gene id sf3a2
gene name sf3a2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15332702 ~ 15337978 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925548.2
aggaatatcaTCTTTAGGCTGTTCAATAAAGTTTTAAGTGTCAAAATAACAGGAACAGGAAACGCACCGTCTAGCGCATGCGCATTGTGCAGGTTACGGCGGCAAGCGCGAGGTGGACGTTGAgGTGAGCTCAGCACTGAGTGAATTCTGACAGAGAGAAAGCTCCAGTCTCAGTTGGTGAATCCACTGCTCTGTAAAGATGGACTTCCAGCACAGAGCCGGTGGAAAGACCGGCAGCGGCGGGGTGGCTTCGGCCTCCGAGAGCAACCGGGACCGGCGAGAACGCCTGCGCCAACTCGCTTTAGAAACCATAGACATCAACAAGGACCCTTACTTCATGAAGAACCATTTGGGCTCTTATGAGTGCAAGCTGTGTCTCACACTTCATAATAACGAGGGGAGTTATCTGGCTCACACACAGGGAAAGAAGCACCAGACTAATTTAGCACGAAGAGCAGCTAAAGAGGCCAAAGAGGCTCCGGCCCAACCAGCGCCTGAGAAAGTAAAGGTGGAAGTGAAGAAGTTTGTAAAGATCGGGCGACCGGGTTACAAAGTAACGAAACAGAGGGATCCAGAGACTGGACAACAGAGTCTGCTCTTTCAGATTGACTATCCTGAGATTGCAGAGGGAATTGGACCCAGACACCGTTTCATGTCTGCGTATGAGCAACGTATTGAGCCTCCAGACCGTCGCTGGCAGTATCTGCTCCTGGCAGCCGAGCCCTACGAAACCATTGCATTTAAGGTCCCGAGCAGAGAGATAGACAAATCAGAAAGTCGCTTCTGGACTCACTGgaacagagaaacaaaacaaTTTTTCCTTCAGTTCCATTTCAAAATGGAGAAGCTTTTACTTCAGCCTGGCGGACAGGCAGCTCCTCCTACCATCAAGCGCCCGCCTCCTCTGATGACCGGCCTCGGTGCTCAAACAGCCACTGACGCCATGCCCCCACCACCACCCGGAGGAATTCCAGGGATGCCCCCTCCTCCACCCAACGCCCCTCCACAGATGCCCCATGCCTCtcgcttgcctcctcctggtgCTCTGCCACCTCACCTGCGCCCACCGTTACCTGCTGATGGAATTCCTCCTTCACCAAGCAACTGAGTGTGATGCTCaggagtttttttgttttgttttgttttgttttttttgtctttacatTGGATTTGAGAGGATTTTGTTCATCAGATATTCTGTGAACTTTCTGAATCAGTCTGATTTTTGTAAATAAGACCAGGAGGTGTGTATACATCAGGGTTTGGTGGTTATAGTTGGTATTTTTATAGCTGCATTCCTGCTCAGATAAGAGCAGCCTCATGTTCTCTTTGCTGAATGTTTCAGATTTCATGCACAAGCTGTAATAACTGAATTCTATCATTGTTTGGAGGTCCACTAAGTCAGGTGCCTAAAGATGGCTTGATCTTCAAGCTCTAATCTAGtttagagtattttttttaaatatttaatgtgatttttctgcTGTGAGACCACCACAACCACCGCACCCTAACATCAAccaattattgtttttttttgt
>XM_034314712.1
gcgccTTTTCCACGCTGAATACGCATAATGCAAGAGTTTACGTTCGTTATAAGGGTTCCTAAAATAACGACAAACTGCAGTAGTACAACtataagaaaaacatttaatgtatatttttgGTGAGCTCAGCACTGAGTGAATTCTGACAGAGAGAAAGCTCCAGTCTCAGTTGGTGAATCCACTGCTCTGTAAAGATGGACTTCCAGCACAGAGCCGGTGGAAAGACCGGCAGCGGCGGGGTGGCTTCGGCCTCCGAGAGCAACCGGGACCGGCGAGAACGCCTGCGCCAACTCGCTTTAGAAACCATAGACATCAACAAGGACCCTTACTTCATGAAGAACCATTTGGGCTCTTATGAGTGCAAGCTGTGTCTCACACTTCATAATAACGAGGGGAGTTATCTGGCTCACACACAGGGAAAGAAGCACCAGACTAATTTAGCACGAAGAGCAGCTAAAGAGGCCAAAGAGGCTCCGGCCCAACCAGCGCCTGAGAAAGTAAAGGTGGAAGTGAAGAAGTTTGTAAAGATCGGGCGACCGGGTTACAAAGTAACGAAACAGAGGGATCCAGAGACTGGACAACAGAGTCTGCTCTTTCAGATTGACTATCCTGAGATTGCAGAGGGAATTGGACCCAGACACCGTTTCATGTCTGCGTATGAGCAACGTATTGAGCCTCCAGACCGTCGCTGGCAGTATCTGCTCCTGGCAGCCGAGCCCTACGAAACCATTGCATTTAAGGTCCCGAGCAGAGAGATAGACAAATCAGAAAGTCGCTTCTGGACTCACTGgaacagagaaacaaaacaaTTTTTCCTTCAGTTCCATTTCAAAATGGAGAAGCTTTTACTTCAGCCTGGCGGACAGGCAGCTCCTCCTACCATCAAGCGCCCGCCTCCTCTGATGACCGGCCTCGGTGCTCAAACAGCCACTGACGCCATGCCCCCACCACCACCCGGAGGAATTCCAGGGATGCCCCCTCCTCCACCCAACGCCCCTCCACAGATGCCCCATGCCTCtcgcttgcctcctcctggtgCTCTGCCACCTCACCTGCGCCCACCGTTACCTGCTGATGGAATTCCTCCTTCACCAAGCAACTGAGTGTGATGCTCaggagtttttttgttttgttttgttttgttttttttgtctttacatTGGATTTGAGAGGATTTTGTTCATCAGATATTCTGTGAACTTTCTGAATCAGTCTGATTTTTGTAAATAAGACCAGGAGGTGTGTATACATCAGGGTTTGGTGGTTATAGTTGGTATTTTTATAGCTGCATTCCTGCTCAGATAAGAGCAGCCTCATGTTCTCTTTGCTGAATGTTTCAGATTTCATGCACAAGCTGTAATAACTGAATTCTATCATTGTTTGGAGGTCCACTAAGTCAGGTGCCTAAAGATGGCTTGATCTTCAAGCTCTAATCTAGtttagagtattttttttaaatatttaatgtgatttttctgcTGTGAGACCACCACAACCACCGCACCCTAACATCAAccaattattgtttttttttgt

Function

symbol description
sf3a2 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be involved in spliceosomal complex assembly. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U2 snRNP; U2-type prespliceosome; and catalytic step 2 spliceosome. Orthologous to human SF3A2 (splicing factor 3a subunit 2).

NR:

description
splicing factor 3A subunit 2

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12826 SF3A2, SAP62; splicing factor 3A subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925548.2 True 1541 mRNA 0.48 8 15333130 15337978
XM_034314712.1 False 1536 mRNA 0.47 8 15332702 15337978

Neighbor

gene id symbol gene type direction distance location
tpgs1 tpgs1 coding upstream 6644 15321461 ~ 15326058 (+)
LOC113533560 isyna1,LOC107671814,LOC107549817,LOC107696502 coding upstream 11718 15313865 ~ 15320984 (+)
si:dkeyp-68b7.5 LOC108280921 coding upstream 35166 15292775 ~ 15297536 (+)
si:dkeyp-68b7.12 arhgap30 coding upstream 40078 15281241 ~ 15292624 (+)
nectin4b LOC108280452 coding upstream 64083 15255190 ~ 15268619 (+)
LOC113533554 LOC108280165,LOC108427150,LOC107724989,LOC107549819,LOC107552683,LOC107671817,LOC107696585 coding downstream 74760 15412738 ~ 15460090 (+)
pias4b LOC108280250 coding downstream 165655 15503633 ~ 15511913 (+)
map2k2b mp2k2,map2k2b,LOC108427153,LOC105905870 coding downstream 176434 15514412 ~ 15521221 (+)
tcf3a LOC100304646 coding downstream 196944 15534922 ~ 15563785 (+)
mbd3a mbd3,LOC108427158,LOC105938962,LOC107713415,LOC107393299,LOC101480296,LOC106515020 coding downstream 233986 15571964 ~ 15578078 (+)
G320843 NA non-coding upstream 21893 15310604 ~ 15310809 (+)
G320797 LOC108280451 non-coding upstream 106630 15223871 ~ 15226072 (+)
G320386 NA non-coding upstream 661033 14613999 ~ 14671669 (+)
G320371 NA non-coding upstream 772089 14549223 ~ 14560613 (+)
G320212 NA non-coding upstream 873693 14458672 ~ 14459009 (+)
G320848 NA non-coding downstream 2588 15340566 ~ 15341207 (+)
G320935 NA non-coding downstream 123876 15461854 ~ 15463232 (+)
G320949 NA non-coding downstream 205919 15543897 ~ 15546092 (+)
G320977 NA non-coding downstream 232716 15570694 ~ 15571089 (+)
G320981 NA non-coding downstream 258046 15596024 ~ 15596226 (+)
si:dkeyp-68b7.7 LOC108280928 other upstream 29414 15299061 ~ 15303288 (+)
fcer1gl LOC100304589 other upstream 79147 15249515 ~ 15253555 (+)
LOC113533365 LOC108280254 other upstream 231241 15082238 ~ 15101461 (+)
LOC113533366 NA other upstream 266331 15063721 ~ 15066371 (+)
ly97.3 LOC108280687 other upstream 503924 14827242 ~ 14828778 (+)
LOC113533167 NA other downstream 228576 15566554 ~ 15570478 (+)
slc25a42 slc25a42,LOC107696381 other downstream 287824 15625802 ~ 15682276 (+)
G321088 NA other downstream 531038 15869016 ~ 15870995 (+)
gpx4b gpx4b,gpx4,LOC107552704,LOC107723219,LOC103364371,LOC102207447 other downstream 591969 15929947 ~ 15936773 (+)
jund jund,LOC108280549 other downstream 762555 16100533 ~ 16111089 (+)

Expression


Co-expression Network