LOC113533414 (btbd2,LOC105905850,LOC108427161,LOC103376164)


Basic Information

Item Value
gene id LOC113533414
gene name btbd2,LOC105905850,LOC108427161,LOC103376164
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15650621 ~ 15658676 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925561.2
atggctgctggAGACAACGGCGGTCGGGCCCCGTGTTTAAATTTCCCCTCTCCCGGTCCGCTGGGTAACAGTCAGCCGAGCAACAGTACCTACACTCTGGCAGCAAGTAACGGAGGATCCATCGGGGCGACCGGAAGCTCACAGAGCGCGACGAGACGCTCGAACCCTCAGCCAGGGCCTAACGGCTCCGAATGCAGCGGTGTCGCCTCTGGGCTTCCGCCGAATATGCGCAACTCTCTCCCGCAGGCCATGGCTCAGGGCTCGGTGATAGCGGGGGCGGTCGGGGGGTCAATGGCGGCCGCAGTGGCGTCGAACATGACCGGACCAGCGTCAAATTCAGGGCCGGCTCCTGCGACCCACTCCTCACTTTCTGCCCCTCCGGCTGCAGCTGCGGTTCTGGTTTACCGAGAGCCCGTGTATAACTGGCAAGCAACAAAAAGTACTGTGAAGGAAAGGTTTGCATTTCTCTTCAATAACGAGGTGCTAAGCGACGTTCACTTTCTGGTGGGGAAAGGGATGGGAGTACAGCGCATACCTGCTCACAGGTTTGTTTTGGCAGTTGGCAGTGCTGTATTTGATGCCATGTTTAACGGAGGCATGGCCACCACCTCCACAGAGATCGAGTTGCCAGATGTAGAGCCTGCTGCTTTTCTGGCTTTGCTCAAGTTCCTATACTCGGATGAAGTTCAAATCGGGCCCGAGACCGTCATGACCACTCTGTACACGGCAAAGAAATACGCAGTCCCGGCGCTGGAGGCTCACTGTGTGGAGTTCCTGAAGAAGAACCTGCGGGCTGACAACGCCTTCATGCTCCTCACACAGGCCAGGCTTTTTGATGAACCTCAGCTGGCCAGTCTGTGCCTCGAGAACATTGACAAGAACACGGGTGATGCTCTGGCTGCAGAAGGCTTCACAGATATAGATCTGGACACACTTGTAGCTGTGCTGGAGCGGGACACACTCGGGGTGCGGGAGGTTCGGTTGTTTGGAGCGGCGGTGCGTTGGGCCGAGGCAGAGGCTCACCGGCAGCAGCTGCAGCCCACACCCGAGAACAAGAGGCGCGTTCTGGGGAAAGCCCTCACCCTCATCCGCTTTCCTCTAATGACCATAGAGGAGTTTGCAGCAGGTCCTGCTCAGTCAGGCATTCTGACAGACAGGGAGGTGGTCAGTCTGTTCCTCCACTTCACAGTGAACCCCAAACCGCGAGTGGAGTTCATCGACCGGCCCCGCTGCTGTCTGCGTGGGAAAGAGTGCAGCATCACGCGCTTCGCCCAGGTGGAGAGCCGCTGGGGCTACAGTGGGACCAGCGACCGTATCCGGTTCTGTGTAAACCGCAGGATTTTTGTTGTGGGTTTTGGACTGTATGGGTCTATACACGGACCCACAGACTATCAGGTCAACATACAGAtcattcacacagacagtaatacAGTCCTTGGTCAGAATGACACGGGTTTCAGTTGTGACGGGTCATCGAGCACCTTCAGGGTCATGTTCAAAGAGCCGGTGGAGGTTTTGCCCAATGTAAACTACACAGCCTGCGCAACTCTTAAGGGTCCAGACTCCCACTATGGCACCAAAGGCATGAGGAAGGTTACACATGAGTCCTCAGGATCCGGCACCAAAACCTGCTTCACCTTCTGCTACGCTGCTGGCAACAACAACGGCACTTCCGTCGAAGATGGACAGATCCCTGAGGTCATCTTCTACACATAAAGACCATTGAGTTCTTCCATATTCCAGGAGTTTTGGGCTGTATTACAAATAGCTCACTGATGTACTTCCAGTTTTGTTAACTAGTCTATAACTGGAAGAGCTGAACTTGAGTGAGTAATGTAGTGGACGGCGGAGATGTTTAGAGTCCTACACCTTCACCTGCACTTTCTGAAAAGCTGCACAGAGTTAATCTGCGTGCTTACTGATTGAAGGAGCCTACTTTGTCCATGCTGATTATAATAGAACCCATAGGCTGTGAACTATTCACCAGCAGACTGACCTTGATGCTGTTTAACTGGATTGAAGAGCTATTATTGCATTTCCTGTCTTTAACAGCTCGTTCAGCATCTCTTAAGTAGGGACAAAACTGAGGAAAAGGTTTTCTTTATGAGAACTGGATTAATCACAACTCCATTTATGCCAGCAGGGGAAGTGAGATCAGGCTCTGAAGCATTTCTAGGATGCAGGGGAATTCTGCCTGCTCAGGTTCCCTTATGTTCTGTGCCAAAATTGTACTTAGAATACCTCCTTCACAGGAAGTTAACTAGTGCTCAATGATGTTCAGTTGTAACACTCAGAATCATCTTTAAGCCAGGCATACAGCTCTGTAGATCACCGTAGGCTGTTGTGAAAATTAGCACACGCAGGGGTCCTTCAAGGGCGGAGCATTGACCCTCTGCTTTTGTCGGGCCTAAAATATTAAATCCTCATCTCAGTGGTCACTCACTTATCATATAATATAGTGAGTTCTCATAGGCCATGGTAAAAACAACTGTTTGAATAGACTGTTGCATAATCAGCTGTTAAACTGTCTTCTCGTGGGTTGCATGTCACTTACGACGTGAAATGTCACAAACGTAAAGAGAAATTTGAGTTTTTAAGGATGTCCAACAAATTCATTGTTCATCAGTGCTGAAGAAGATTATATGGCTCAATTTCTTGCCTACTTTACATCATAAACAACAGACTATATTTATACTGGATCCATGTACTTTTGGTCATTCTGTGTTCATGTCGGTAAcagaaattagaaaaataaaatacaaatggtTCGTTAAAAATTGTTTCTAAATTTAGGCTGgattgtgtttctttttcttttggtaAGAAATGAACATTTCTGTTACTGAACACGAATATAGAATGACCAAATGCTGGTTAACCAGATTCTAGTCCACCACCCACTGTCACCTACTAGACCAAGCCTCTCTTGCTCATCCTTAACACATCTGTAAGATACTACAATAGCCCATGTgtgtttgataaaaaaaaaaactgacggGTACCTGAACACCACGCAGCACAGACGGCGTGTAAGGGACTGTTCCAGCACTAATCATTAATGTAGCTCGACAGGTTCATGTTTAGATCTATTACTTTTCTTTTGCCTTGTTTGGTGAGATTAAATCAGGGTTTTCATTTCTATATAACCAGCTTCAAACTGTAAAGTACTGATATCACCTCATATGTGTGTACAATGctattaaataaaaaggttGTTAAATGCAAGTGTTATTCATTTTCTGACAGCTAACGTGTTCATGATGACCTGCTCATGAACAGAGGGACACAGTGAACCTAAACTGCACAGAAAAGGGTttgatttaattgtttaatttccTGGGTGAAGATAAATGTTTGGTTTGGAAGCTGGACTGAAAGCAGCATCATAAATAAAGCTGgtctgtatttaaaaa

Function

symbol description
btbd2 Predicted to be involved in neurogenesis. Located in P-body.

GO: NA

KEGG:

id description
K10477 BTBD1_2; BTB/POZ domain-containing protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925561.2 True 3413 mRNA 0.48 9 15650621 15658676

Neighbor

gene id symbol gene type direction distance location
LOC113533252 mex3d,mex3b,LOC107736985 coding upstream 64338 15580021 ~ 15586283 (+)
mbd3a mbd3,LOC108427158,LOC105938962,LOC107713415,LOC107393299,LOC101480296,LOC106515020 coding upstream 72543 15571964 ~ 15578078 (+)
tcf3a LOC100304646 coding upstream 86836 15534922 ~ 15563785 (+)
map2k2b mp2k2,map2k2b,LOC108427153,LOC105905870 coding upstream 129400 15514412 ~ 15521221 (+)
pias4b LOC108280250 coding upstream 138708 15503633 ~ 15511913 (+)
armc6 armc6,LOC107696408,LOC107671809 coding downstream 1300 15659976 ~ 15666070 (+)
LOC113533481 LOC108280200,LOC107723211,LOC107748524,LOC102294424,LOC102791396,LOC101468755,LOC100704480,LOC102200990 coding downstream 139515 15798191 ~ 15842389 (+)
sbno2a sbno2 coding downstream 204471 15863147 ~ 15890456 (+)
arhgap45a LOC108280537,LOC108427168 coding downstream 235325 15894001 ~ 15923289 (+)
pip5k1cb LOC108280566,LOC108427169 coding downstream 280219 15938895 ~ 15984585 (+)
G320992 NA non-coding upstream 33498 15616911 ~ 15617123 (+)
G320991 LOC108280289,LOC106912954,LOC106923029,LOC102789877,LOC101482480 non-coding upstream 34403 15615997 ~ 15616218 (+)
G320988 NA non-coding upstream 37080 15613194 ~ 15613541 (+)
G320981 NA non-coding upstream 54395 15596024 ~ 15596226 (+)
G320977 NA non-coding upstream 79532 15570694 ~ 15571089 (+)
LOC117600003 NA non-coding downstream 24395 15683071 ~ 15704584 (+)
G321203 NA non-coding downstream 363810 16022486 ~ 16023068 (+)
G321214 NA non-coding downstream 383118 16041794 ~ 16043738 (+)
G321217 NA non-coding downstream 387470 16046146 ~ 16046482 (+)
G321220 NA non-coding downstream 390418 16049094 ~ 16049308 (+)
LOC113533167 NA other upstream 80143 15566554 ~ 15570478 (+)
si:dkeyp-68b7.7 LOC108280928 other upstream 347333 15299061 ~ 15303288 (+)
fcer1gl LOC100304589 other upstream 397066 15249515 ~ 15253555 (+)
LOC113533365 LOC108280254 other upstream 549160 15082238 ~ 15101461 (+)
LOC113533366 NA other upstream 584250 15063721 ~ 15066371 (+)
G321088 NA other downstream 210340 15869016 ~ 15870995 (+)
gpx4b gpx4b,gpx4,LOC107552704,LOC107723219,LOC103364371,LOC102207447 other downstream 271271 15929947 ~ 15936773 (+)
jund jund,LOC108280549 other downstream 441857 16100533 ~ 16111089 (+)
si:ch211-178n15.1 LOC108280694 other downstream 453359 16112035 ~ 16120033 (+)
G321257 LOC108280695 other downstream 472659 16131335 ~ 16132364 (+)

Expression


Co-expression Network