rnf126 (rnf126,LOC107569633,LOC107754583,LOC107596227,LOC107750906,LOC105909243)


Basic Information

Item Value
gene id rnf126
gene name rnf126,LOC107569633,LOC107754583,LOC107596227,LOC107750906,LOC105909243
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 14006357 ~ 14015371 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925567.2
GCGGTTTACCTCGCTTCGCGTGTTCAGGCGGTTTGTCCCTGTCGGGGACCCGTACACGCTGTGTCTCTGCGAGTCCCGCTACAGTGAATCCGAAGATGGCGGAAGCTCCTGTACAGACCTGCCGGTATTTCTGTCACCGATGTTCTGAAGAGATTAGCCCTCGTCTCCCGGATTACACCTGTCCACGGTGTGAGTCCGGCTTCATTGAGGAGTTACCAGAGGAGAGAAGtacagagaatggctCCACATCCACGTCGTCCACCAGTGATCAGAACCGTTATCCATTTGAGAATGTGGACCCGACACTATTTACCTTCCCACACCCGTACGGCCAGCTGGCTCTGGGCATCTTCGGCGAGGGTTTTGATCTCCGGACGGGCATGCCCTCTGAGGACGGGCGCGATGCTGAGAACCGGCGGGAGCGGGAGATGGCATCACGCCAACGCTACGGGGCCAGACAACCTCGGGGGCGCCACATTCCCCGGAGACAAGGGACACGGCACGAAGGAGTGCCCACTTTAGAGGGAATAATTCAGCAGTTAGTAAATGGAATCATCGCGCCAACAGCTATGCCAAACATGGGAATGGGACCATGgggaaTGCTACATTCAAATCCAATGGACTATGCATGGGGTGCCAACGGCTTAGACGCCATTATAACACAGTTATTAAATCAGTTTGAAAATACGGGTCCACCTcctgcagacagagagaagatcAAAAACCTCCCGACAGTTCAGATCACAGAGGAGCATGTGGGAGCTGGTTTAGAATGTCCCGTGTGTAAAGAAGACTACACCGAGGGGGAGAGCGTTAGACAACTTCCATGCAATCACCTCTTTCACAATGACTGTATAGTGCCCTGGCTCGAACAGCATGACACGTGTCCGGTGTGCAGGAAGAGCTTGAGCGGCCAGAACACAGCCACAGATCCTCCTGGCTTATCAGGAATGAACTTCTCACCTTCCTCATCGTCATCGTCCTCCTCCAGTTCCCCTAGTAACGAGAATGCTGCCAACAACTCCTAAAATACCCGCAATCCTTCCtgacacacgcacgcacacacacacacacacgcacacaaatatTTTATCATCTCAGTCAGAGAGGGTGTGGCCAATCCTGTTAAAGCTCAAACCCCTCACTCAGATCTTAATAATCCAGCCCTGAAGAACCAGGAATGTTCTAGATTGTTCTAGCGCTCCACTTCTCACACGGTTCTGCCGTTACTGAGAATGAAGCGAGGGCCGATCTGAAACCTGATCGTCTAGAATGCACCCTTTAAGGCCAACACCTCAttatcctcctcatcatcattaccctcatcatcattatcatctgACTCCCTGGAGAAAGCGCCAAAGGACATGTCGACAAGCAAACAGAGGagagaaaccacacacacacacacacacacacacacacacacacacacacagaacacctTCACCTGTATtccaatccttttttttttattactgaactggagcatgagcttttttttttttttttttttttaacacatgacAAGCAGTCCCGTACAAATAGGGATTTTAACTCAAAAAGCGACTGTGGGGtcaaataaagggaaaaaagggTTGATAGCAGTTAGAAGATGTGTACAGAACTcttgcagacacacacacacacacattctcacacccAGCCAATTACAGGATTTGAATGTCATTTTAATAGAGACTGTTACGTCTCTCCTTCCCATGCAGGCAAAACCTTCAACTAGAaccattttttcttttgtttttattaaaatgattttttaaaattcatatatatCGGCGGCTAAGAGTTGTACTCCGTGAATACGCATATAGTGATATttattgaggggaaaaaaatgagataacACGAACGAAGAACatcaaaaaaacaa

Function

symbol description
rnf126 Predicted to enable metal ion binding activity and ubiquitin protein ligase activity. Orthologous to human RNF126 (ring finger protein 126).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RNF126-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11982 RNF115_126; E3 ubiquitin-protein ligase RNF115/126

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925567.2 True 1894 mRNA 0.48 9 14006357 14015371

Neighbor

gene id symbol gene type direction distance location
twsg1a twsg1,tws1a,LOC106579643 coding upstream 2657 13988603 ~ 14003700 (+)
ankrd12 ankrd12,LOC108280287 coding upstream 21301 13949726 ~ 13985056 (+)
ndufv2 ndufv2,LOC107596229,LOC107754586,LOC107696125 coding upstream 58565 13932646 ~ 13947792 (+)
rab12 rab12,LOC107696134,LOC107750912 coding upstream 171542 13820665 ~ 13834815 (+)
LOC113533233 piezo2,LOC108414168 coding upstream 199099 13720966 ~ 13807258 (+)
sirt6 sirt6,LOC107667852 coding downstream 329223 14344594 ~ 14372193 (+)
ralbp1 ralbp1,LOC107696059,LOC107667860 coding downstream 422992 14438363 ~ 14450439 (+)
LOC113533212 LOC108280212,LOC108427118,LOC568754,LOC107558277,LOC107667866,LOC107729992,LOC107600185,LOC107750900,LOC107696035 coding downstream 466305 14481676 ~ 14487383 (+)
gna11b gna11b,LOC103033252,LOC108280682,LOC108427217,LOC105889474,LOC107600186,LOC107667855,LOC107696027,LOC107558284 coding downstream 534938 14550309 ~ 14594321 (+)
chico chico,aes,LOC108280588,LOC108427216,LOC107558286,LOC107667856,LOC106574496 coding downstream 587398 14602769 ~ 14628849 (+)
LOC117595739 NA non-coding upstream 87211 13911571 ~ 13919146 (+)
LOC117595740 NA non-coding upstream 96077 13904527 ~ 13910280 (+)
G319886 NA non-coding upstream 96722 13908863 ~ 13909635 (+)
G319867 NA non-coding upstream 111916 13856965 ~ 13894441 (+)
G319755 LOC108280256,LOC106569623,LOC108439880,LOC107687929,LOC107754609,LOC107596296 non-coding upstream 416041 13589599 ~ 13590316 (+)
G320003 NA non-coding downstream 2570 14017941 ~ 14018154 (+)
G320004 NA non-coding downstream 3458 14018829 ~ 14019036 (+)
G320032 NA non-coding downstream 122291 14137662 ~ 14140523 (+)
G320033 NA non-coding downstream 125309 14140680 ~ 14186212 (+)
G320057 NA non-coding downstream 173369 14188740 ~ 14189014 (+)
LOC113533270 mtcl1 other upstream 108443 13837433 ~ 13897914 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other upstream 851830 13021142 ~ 13154527 (+)
G319170 NA other upstream 1203338 12765055 ~ 12803019 (+)
G318439 NA other upstream 2536858 11467299 ~ 11469499 (+)
per2 LOC108280459,LOC108439864 other upstream 2541588 11399884 ~ 11464769 (+)
zmp:0000000521 zmp:0000000521,LOC108280721,LOC107696078,LOC108442439,LOC107596226,LOC105888700 other downstream 64878 14080249 ~ 14127012 (+)
rab31 rab31 other downstream 370867 14386238 ~ 14466753 (+)
tle2c zgc:136336,LOC108280589,LOC108427215 other downstream 622410 14637781 ~ 14666508 (+)
ly97.3 LOC108280687 other downstream 811871 14827242 ~ 14828778 (+)
LOC113533366 NA other downstream 1048350 15063721 ~ 15066371 (+)

Expression


Co-expression Network