sugp1 (sugp1,LOC107729615,LOC107563402,LOC100304763)


Basic Information

Item Value
gene id sugp1
gene name sugp1,LOC107729615,LOC107563402,LOC100304763
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16395828 ~ 16404567 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925598.2
ATGGAGTCAAATGACGcagcTCGAGGAGGCTGGAAAAGTAAATCAGCTCACCAGAAGAGCAAGTTTAACGTTATAATGCGTCAGGAGGAGCTCATAGCACAGAAGAAGCGAGAAATAGAGGCCAAGTTGGCCGAGCAAGCCAAGCAGAACCTGTCAGCTCCCAGCAAGCCATCAGCAGAGAGTACCTCTGAATCGCAGGGACTGACCTCAAACAAGTTTGTGAACGATGGAAGCTTTCTTCAGCAGTTTCTAAAGATGCAGAAGGAGAAATCCAACCCAGATTCAGCATCCAGCAGTGACTCCGGAGGAACCTCGTCTTCTTCACAGAGCCAGAAGAAAAACATTCTGGTTGGGAAACGGCCCGGTTTGGGTGTTGGCAGCATGCTCAATCAGTATAAGAGCTACTCCCAGACCAAAAAGACACCACTTCAGATCCCTCGACCGAGTATCTTCAGCTCACCGGACGAAGACGAGGACGAGGACGAGAGCGATGACGCGCACTACCTGGAGGTTAAAGTTTCCCCCCCAGAGGATGAAGATTTGGTCAACATCATCAACCGGTTGGCTGCTTTCATTGCCGAAGGCGGACCAGAGCTTGAGAGGAAAGCTTTGGAAGACTACAAGGACAATCCCATGTTCTCGTTCTTATTTGAGAGGGACAGCAAGGAATATCTGTACTTTCGCAAGAAAGTAGCGCGACTTAGACAAGAGAACCAAGGTTCATCTACACAAACTGATGTCTCCTCCTCAGTGGACGAGGACACGAAGAAGGTGGCGGAGAAGCTGGCCCGCTTCGTGGCCGACGGAGGGCCAGAGGTGGAGGCCATCGCTATCAAACACAACCACGACAACCCCACCTTCAGATTCCTATATGATCACCAAAGTCCAGCTCACCACTTCTACAAGTCCAAAGTAGAGGAGTACCGACAGGCCAAAAGTCGATCTGCACCTCCGTCTACTGTCGAGTCGTCTTCAGGCACCAAGCGCCCGGTTGAAACTCCACCAGTTCCCAACATCCTCAGTTCAGCCCAAACAGAGCAGAATAAGGACATAACTGCTACAGGTGCAAAGCGCAAGAGGAAGAGTCGCTGGGGGTCTGAGGGTGACAGAGTGGACCTGCCGGTCCCTTCTGTCGTCATCCCTCAAATGGTTAAGCCAGATCCTGATACTCCCACGCTGTCTGAGCAGGAACTGATAGGATTGGGTTATAAGAAAGGGAAGCCGGTTGGGCTGGTGGGAGTCACAGAGCTCTCTGAGGAGCAGAAGAAACAACTCAAAGAACAGCAGGAGATGCAGGAGATGTTCGATATGATCATGAAGCACAAGAAGGCAATGCAGGACATGCAGCTGATGTGGGAGAAGGCTGTGCGGGAGCACCAGCATGAGTACGACAGCGATGAGGAGATCGACTCCAAGAACGGCACCTGGGAACACAGACTCCGAAAGATGGAGATGGAAAAAACAAGGGAGTGGGCCGAGCAGCTGACTGAGATGGGGAAAGGAAAGCATTTCATTGGTGACTTTCTGCCACCTGATGAGCTGGAGAAGTTCATGGAAACATTTAAGGCTCTAAAGGAAGGCAGAGATCCAGACTACTCCGAGTATAAAGAGTTCAAGCTGACTGTAGAGAACATTGGTTTCAAGATGCTGATGAAGATGGGCTGGAAGGAGGGAGAGGGTCTGGGCACCGAGGGCCAGGGCATCAAGAACCCTGTCAACAGAGGAACCACAGCAGTAGATGGAGCAGGCTTTGGAGTGGACCGACCTGCTGAACTCAGCAAAAACGATGACGAATACGATGCTTTCCGCAAGAGAATGATGCTGGCTTACCGTTTCAGACCTAACCCTTTGAATAATCCAAGGAGGCCATATTACTGAAGAAGTTGTACTACAGTATAATTTTTATCTTGTCTGATACCTTTTCTTCAGTCTGTAGTTCGAAATACACACCTTGGTAGCATTGTAACATTTGTCAGAACGTAAAAAtgtccaattttttttcttgtggttGATTCACTCCTGTTCAACTTGTTTTTTGGAATATGGTTcaaattttcatatttcaaattTTGCATACATTTCTCTTtagaaaaactgaaatatcacaaaaTTCTGACATTCTTGACATTATCAAAACTCATTCCAATAAtgatactgtttattttatgtttgttctCAAAACATCTCTTGTAATGTGCTCTGACATCCCATTAAAGTTTTATTGGTCCTctaa
>XM_026925599.2
GCCGTTCCGCTAGATGGCACTCTAAAACCCCTCACTTCACagataaacatttgttttctcAAGAGAGCCCGAACTAGCGCTTCTCTTCAGCCTCAACCGGGCTTTTTACGTCCTGGAAATGGAGTCAAATGACGcagcTCGAGGAGGCTGGAAAAGTAAATCAGCTCACCAGAAGAGCAAGTTTAACGTTATAATGCGTCAGGAGGAGCTCATAGCACAGAAGAAGCGAGAAATAGAGGCCAAGTTGGCCGAGCAAGCCAAGCAGAACCTGTCAGCTCCCAGCAAGCCATCAGCAGAGAGTACCTCTGAATCGCAGGGACTGACCTCAAACAAGTTTGTGAACGATGGAAGCTTTCTTCAGCAGTTTCTAAAGATGCAGAAGGAGAAATCCAACCCAGATTCAGCATCCAGCAGTGACTCCGGAGGAACCTCGTCTTCTTCACAGAGCCAGAAGAAAAACATTCTGGTTGGGAAACGGCCCGGTTTGGGTGTTGGCAGCATGCTCAATCAGTATAAGAGCTACTCCCAGACCAAAAAGACACCACTTCAGATCCCTCGACCGAGTATCTTCAGCTCACCGGACGAAGACGAGGACGAGGACGAGAGCGATGACGCGCACTACCTGGAGGTTAAAGTTTCCCCCCCAGAGGATGAAGATTTGGTCAACATCATCAACCGGTTGGCTGCTTTCATTGCCGAAGGCGGACCAGAGCTTGAGAGGAAAGCTTTGGAAGACTACAAGGACAATCCCATGTTCTCGTTCTTATTTGAGAGGGACAGCAAGGAATATCTGTACTTTCGCAAGAAAGTAGCGCGACTTAGACAAGAGAACCAAGGTTCATCTACACAAACTGATGTGGACGAGGACACGAAGAAGGTGGCGGAGAAGCTGGCCCGCTTCGTGGCCGACGGAGGGCCAGAGGTGGAGGCCATCGCTATCAAACACAACCACGACAACCCCACCTTCAGATTCCTATATGATCACCAAAGTCCAGCTCACCACTTCTACAAGTCCAAAGTAGAGGAGTACCGACAGGCCAAAAGTCGATCTGCACCTCCGTCTACTGTCGAGTCGTCTTCAGGCACCAAGCGCCCGGTTGAAACTCCACCAGTTCCCAACATCCTCAGTTCAGCCCAAACAGAGCAGAATAAGGACATAACTGCTACAGGTGCAAAGCGCAAGAGGAAGAGTCGCTGGGGGTCTGAGGGTGACAGAGTGGACCTGCCGGTCCCTTCTGTCGTCATCCCTCAAATGGTTAAGCCAGATCCTGATACTCCCACGCTGTCTGAGCAGGAACTGATAGGATTGGGTTATAAGAAAGGGAAGCCGGTTGGGCTGGTGGGAGTCACAGAGCTCTCTGAGGAGCAGAAGAAACAACTCAAAGAACAGCAGGAGATGCAGGAGATGTTCGATATGATCATGAAGCACAAGAAGGCAATGCAGGACATGCAGCTGATGTGGGAGAAGGCTGTGCGGGAGCACCAGCATGAGTACGACAGCGATGAGGAGATCGACTCCAAGAACGGCACCTGGGAACACAGACTCCGAAAGATGGAGATGGAAAAAACAAGGGAGTGGGCCGAGCAGCTGACTGAGATGGGGAAAGGAAAGCATTTCATTGGTGACTTTCTGCCACCTGATGAGCTGGAGAAGTTCATGGAAACATTTAAGGCTCTAAAGGAAGGCAGAGATCCAGACTACTCCGAGTATAAAGAGTTCAAGCTGACTGTAGAGAACATTGGTTTCAAGATGCTGATGAAGATGGGCTGGAAGGAGGGAGAGGGTCTGGGCACCGAGGGCCAGGGCATCAAGAACCCTGTCAACAGAGGAACCACAGCAGTAGATGGAGCAGGCTTTGGAGTGGACCGACCTGCTGAACTCAGCAAAAACGATGACGAATACGATGCTTTCCGCAAGAGAATGATGCTGGCTTACCGTTTCAGACCTAACCCTTTGAATAATCCAAGGAGGCCATATTACTGA

Function

symbol description
sugp1 Predicted to enable RNA binding activity. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Orthologous to human SUGP1 (SURP and G-patch domain containing 1).

NR:

description
PREDICTED: SURP and G-patch domain-containing protein 1

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13096 SF4, SUGP1; splicing factor 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925598.2 True 2233 mRNA 0.48 14 16395946 16404567
XM_026925599.2 False 1984 mRNA 0.51 14 16395828 16404212

Neighbor

gene id symbol gene type direction distance location
rab8a rab8a,LOC107687930,LOC107696202,LOC103479775 coding upstream 10607 16376170 ~ 16385221 (+)
tpm4b tpm4,tpm4b,LOC108280645,LOC102199996,LOC100703626,LOC101474423,LOC108427191,LOC106537044,LOC103156889,LOC108424981 coding upstream 20476 16357577 ~ 16375352 (+)
eps15l1b LOC108280681 coding upstream 172498 16196924 ~ 16223330 (+)
calr3b LOC108280796,LOC108427098,LOC107750920,LOC107552714,LOC107723933,LOC107687912,LOC102296215 coding upstream 202706 16187989 ~ 16193122 (+)
trnag-gcc_19 NA coding upstream 210261 16185497 ~ 16185567 (+)
mau2 mau2 coding downstream 221 16404788 ~ 16419408 (+)
LOC113533360 LOC108280712,LOC108427196 coding downstream 20810 16425377 ~ 16455986 (+)
ndufa13 ndufa13,LOC102786334 coding downstream 53110 16457677 ~ 16460380 (+)
LOC113533391 LOC108280648,LOC108427199 coding downstream 56243 16460810 ~ 16468366 (+)
LOC113533302 LOC108280185,LOC108427202 coding downstream 137767 16542334 ~ 16565021 (+)
G321429 NA non-coding upstream 9305 16386257 ~ 16386523 (+)
trnag-gcc_20 NA non-coding upstream 208787 16186971 ~ 16187041 (+)
LOC117599979 NA non-coding upstream 208825 16185620 ~ 16187003 (+)
G321258 NA non-coding upstream 258224 16135324 ~ 16137604 (+)
G321256 NA non-coding upstream 264823 16130730 ~ 16131005 (+)
G321434 NA non-coding downstream 31632 16436199 ~ 16446124 (+)
G321435 NA non-coding downstream 51876 16456443 ~ 16457168 (+)
G321454 NA non-coding downstream 189630 16594197 ~ 16600593 (+)
G321563 NA non-coding downstream 261863 16666430 ~ 16703816 (+)
G321584 NA non-coding downstream 341209 16745776 ~ 16755230 (+)
G321257 LOC108280695 other upstream 263464 16131335 ~ 16132364 (+)
si:ch211-178n15.1 LOC108280694 other upstream 275795 16112035 ~ 16120033 (+)
jund jund,LOC108280549 other upstream 284739 16100533 ~ 16111089 (+)
gpx4b gpx4b,gpx4,LOC107552704,LOC107723219,LOC103364371,LOC102207447 other upstream 459055 15929947 ~ 15936773 (+)
G321088 NA other upstream 524833 15869016 ~ 15870995 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other downstream 338238 16742805 ~ 16748340 (+)
LOC117599973 LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616 other downstream 352064 16756631 ~ 16788968 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other downstream 386835 16791402 ~ 16793698 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other downstream 434201 16838768 ~ 16859682 (+)
fuz fuz other downstream 1074267 17478834 ~ 17483677 (+)

Expression


Co-expression Network