sirt6 (sirt6,LOC107667852)


Basic Information

Item Value
gene id sirt6
gene name sirt6,LOC107667852
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 14344594 ~ 14372193 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925679.2
TACGCAAATTCCGTATGACGTAGAGAGGAGGACCGACAGAACCCTAGCTTGAAAAAGCTCGCAACTGTTTACAAATAAGAGCAATTAATTCGTGattgtgcatgttttaataaagaCATTAATAGTCGAGATTTAACTACGCTTTGCCATGTCTGTCAACTATGCCGCTGGACTGTCTCCCTACGCGGATAAAGGCATCTGTGGACTTCCCGAGGTGTTCGATGAGCCGGACGAGTTGCGAGCTAAAGTGGAGACTGTGGCTCAGTTGATCAGAGACTCGCAGTACATGGTGGTGCACTCGGGCGCAGGAATCAGCACCTCTGTAGGCATACCTGACTTCAGAGGCCCGAAAGGCGTCTGGACGATGGAGGAAAGGGGAGAGAGTCCTCAGTTTGACACTACCTTTGAAGACGCTAAGCCGAGTGTGACTCACATGGCGCTGCTGCAGCTGCAGAGGGCCGGCTACCTCAAATACCTCATCAGCCAAAACGTGGACGGCCTTCACCTGCGCTCCGGTTTCCCCagggaCCGATTGTCCGAGCTCCACGGGAACATGTTCGTCGAGGAATGTGAGAAGTGCGGCAAGCAGTATGTGCGCGAAAAGGTAATTGGGGTCATGGGTCTGAAGCCCACAGGGCGCTACTGCGAAGGCACACGATCCAGAGGACTCCGAGCCTGCAGAGGGAAGCTGATCAGCACTATTCTGGACTGGGAGGACTCACTTCCTGACCGGGATCTGAACCGCGCAGATGAGGCCAGCAGACGAGCTGACCTGGCTCTTACCTTGGGTACGTCTCTACAAATTAAGCCCAGCGGTGATCTGCCTGTTTTGACCAAACGTACCGGAGGCAAAGTGGTGATAGTGAACCTACAGCCAACCAAACATGACAAGCATGCCCACCTGCTTATCCATGGTTACGTGGATGAAGTCATGGGTCAGCTGATGACGCTCTTGGGCCTGGAGATCCCAGAGTGGGCGGGGCCAACGCTGTGCGAGTTCTCAGGGGGCGATGCGGACATCCTGCCCTACGGCGCCTGGAAAAAGGAAGTCAAGATCGAGCTGAAgatagaggaaaagaaagaaccTGGGGTGAAGAGGAAAACACCAAAGAAGGACAATGATGGAGGAGTCAAAAAAGAGGAAGATGATGAGGGACTGAAGAAACCATGTAAACATGAGGTTGTGGGTGACAGTAAATCAGAAGCAGTCAGTGAGCTCAACAGAGTCAGTGACAAATCCGAGACTGAACTCTGCTCTTCTTCTGTGGGTGAAGCTAAAAAGCCACGGACTGATGTTCCATCCtcatagaacttttttttttttttttttttttctttttaaaaaggaaTCTCAGTGCACAAACCAGCAATACAATCTCAGGCAGATTCTCTACCACATCACAAATCTCCTAGACAGCCAGTGTGTCTTAAGCCGGCTTTTACACTGTACGATTTTCATCCCGGTTTTGCTGTCgcagaaaaaaattgcacataattatagaattctttggtcatgagttAAGATTGGCATTTTTTCAGCCAATCACTGGTGGGCGATTTAGTGTCATTGCCACAGAAGACAGCTGACTACAAAGTTATGGCAAAGttaaaaaaactcatttaaaagccATCAATAGGAGGACGGCACAGGACAGCAAAACTCATTGGACAGCTAAAAGTACAGTAGAAgcttaaaatacagtaaaatataaacgAATGAACAGacaaaatatccttattacctcaagatCAGGCTGATTAATGATGTAAGCAGagtgtagtaattttctttagtcacaggtctatcgttagaggatcttgtTGTATAATCAGACACGGAGATCACATGTTATCACGCAgtgtgttatagattttattacGATTGCCTTGTACAACGTGACAAGTAATCTTAAACGTGACAAGTAATCTTAAAAGACCGGCTTTACTCCTTTAGAAGACTAAGATCTCGTCGTCAAGTGCATAGTGAAATAAGGTGCGAGTCGCTTGTACAGACTGATATGTCATTGCTGATTGCACTGTAGAGCATCTAAAGTGCACCAGTAGCTGCTCACTGATGTTGCATGCAACTTTGTATAAAGCGTGAAGTTTACTTTGGTGTAAAGAGTTAGGGAGTCTGGGTAAACTGTGTTCAAGTAACTAAAGCCCAAATACTTGCAGCATTAGGGCTGATTTCTACTTCTGCAAAAAGTGTGCAAACAGACCTTTGTGTCAGTGGCTGTCAAGTCAAGTTTCAACGATGGCGAGTGAGCGAAAAGGAAGAGtgcatgtctcagtgctcagtgctcgcaggaGTGAAGTGCCGTCATGTTCAGTAGTTTCTCAGAACGCTAGCGAATAATTTTGTGTGGGCAAAAACACCTTCATGACACCTTGTGATCAATTGTAATGAGTATGCTCTTGGACACTATGTGCACTCAGGTCAGCCATCTTCACGCTCTCAGTtcaagatactgtttaaacgcTGTAGCCTGAGCTTGTGCTAAAGATGTGCacagctgttttatttaatttaaattttatttagtttacaGGTTGCACATTCTCCTGTCATATTATGCTGGTTGCAATGTGGTTCATATAACCAAAGCTACTTAAGACAATagggcacttttttttttcctacctgCAATGATACACAAAGCCCCGCCCCTCTCAAGGGCCTATTGGtgcattcgacttacctcagaagtgggaagtcagaGCTCGGAattacatccttttttttttttaaacttctgtgcgttcaagctacaaagtagggaaaaacatggacacctccgtgttcgtcttttgttatcAACAAGCTAACCGggtaactgtgatgagtgacgTATATTTATCTCCTCAAAACAGCCAACTCTAGTCAATGTGATAGATTTAACAATTAAATATGTCtctatgttgattgatctaaaaaGCAAATAGAGTATATGTTTATTTGATGTCCCAACTTGGAGTTCccaagtaggaattccaaggagttgaaggttttttttttgtttatcctggtcagaggtCAGGTGCATCATATGTATGTACATCTTCTGAGAAGTAGAAATCAGCCTTTGTGGGTGTTTCTACCACAGGAACCAAGGAATGTTTCAGGAACTTAGGAACATAAGGCATTCCTACAAGAGGAACCAGGTCCGATAATATTTCCTGCTCCAGGAGTTACAGGGATTTACCGTAGTCTACAAAACTTTACTGATTCGTCAAACAGAGTAACCAGCTATCTTACCTGGAATTAAAAAGAACTGTATGCAGCTAAGAagtgcttgttttctttttttattggtgATGTGGCACAACTGGCAAAGCAGAATGATTTAACAAAGCTTTAGTTTTTATGCACAAATGTGCATACATTCTTGTGTGCTTGCATCTGGTTTAAAAAGCTCTATTAATGTTAACATATTCATGCAACAAAGCAACAGCAATAATGAACAACAACCTTAGTCTCAACCTCCTCCATATTTGTTGTTTGATGCATGTGTTGTATTTGTCACATAGTTTGCaccactttttttattttagatcacGGTCCTGGTTCCTTCAACGGGGTGAAAACGCAAAACTggaattttgtcatttttgtgtaGGAAAGTTCCAGAACTGTTTAGTTCCTTAAGAGGTTCCTGACACAAAATGTACCTATTGATGATGAAAAACTTTGGAGGCCAGTTGTAAGGATGCGTTTTGGGACTGAATTATTCCCATAATGTGACATACATGTTGGTCTATAGGAGCTTTGCTTGCACACCAGACAATAGCAAGACTGAATCAAAGTATCCAACTAGACACCTTTTGCTATTTCCTTTCAGTGACattgttttctaaaaaaaaacttgtgatAGATAGAACTTTTTATAACCAGCCCAAGTTAGAAATAAATGTCTTCAAAAAA

Function

symbol description
sirt6 Predicted to enable NAD+ binding activity and transferase activity. Is expressed in liver and retina. Orthologous to human SIRT6 (sirtuin 6).

NR:

description
NAD-dependent protein deacetylase sirtuin-6

GO:

id name namespace
GO:0070403 NAD+ binding molecular_function

KEGG:

id description
K11416 SIRT6, SIR2L6; NAD+-dependent protein deacetylase sirtuin 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925679.2 True 3925 mRNA 0.43 8 14344594 14372193

Neighbor

gene id symbol gene type direction distance location
rnf126 rnf126,LOC107569633,LOC107754583,LOC107596227,LOC107750906,LOC105909243 coding upstream 329223 14006357 ~ 14015371 (+)
twsg1a twsg1,tws1a,LOC106579643 coding upstream 340894 13988603 ~ 14003700 (+)
ankrd12 ankrd12,LOC108280287 coding upstream 359538 13949726 ~ 13985056 (+)
ndufv2 ndufv2,LOC107596229,LOC107754586,LOC107696125 coding upstream 396802 13932646 ~ 13947792 (+)
rab12 rab12,LOC107696134,LOC107750912 coding upstream 509779 13820665 ~ 13834815 (+)
ralbp1 ralbp1,LOC107696059,LOC107667860 coding downstream 66170 14438363 ~ 14450439 (+)
LOC113533212 LOC108280212,LOC108427118,LOC568754,LOC107558277,LOC107667866,LOC107729992,LOC107600185,LOC107750900,LOC107696035 coding downstream 109483 14481676 ~ 14487383 (+)
gna11b gna11b,LOC103033252,LOC108280682,LOC108427217,LOC105889474,LOC107600186,LOC107667855,LOC107696027,LOC107558284 coding downstream 178116 14550309 ~ 14594321 (+)
chico chico,aes,LOC108280588,LOC108427216,LOC107558286,LOC107667856,LOC106574496 coding downstream 230576 14602769 ~ 14628849 (+)
scn12aa scn12aa,LOC100304599,LOC108427209,LOC107655859,LOC107713684,LOC107558292 coding downstream 406029 14778222 ~ 14804806 (+)
G320149 NA non-coding upstream 29276 14315061 ~ 14315318 (+)
G320150 NA non-coding upstream 31708 14312252 ~ 14312886 (+)
G320099 NA non-coding upstream 100440 14243952 ~ 14244154 (+)
G320095 NA non-coding upstream 103391 14240982 ~ 14241203 (+)
G320070 NA non-coding upstream 137527 14206855 ~ 14207067 (+)
LOC117595736 NA non-coding downstream 32786 14404979 ~ 14426298 (+)
G320210 NA non-coding downstream 66523 14438716 ~ 14453951 (+)
G320211 NA non-coding downstream 83190 14455383 ~ 14456457 (+)
G320212 NA non-coding downstream 86479 14458672 ~ 14459009 (+)
G320371 NA non-coding downstream 177030 14549223 ~ 14560613 (+)
zmp:0000000521 zmp:0000000521,LOC108280721,LOC107696078,LOC108442439,LOC107596226,LOC105888700 other upstream 217582 14080249 ~ 14127012 (+)
LOC113533270 mtcl1 other upstream 446680 13837433 ~ 13897914 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other upstream 1190067 13021142 ~ 13154527 (+)
G319170 NA other upstream 1541575 12765055 ~ 12803019 (+)
G318439 NA other upstream 2875095 11467299 ~ 11469499 (+)
rab31 rab31 other downstream 14045 14386238 ~ 14466753 (+)
tle2c zgc:136336,LOC108280589,LOC108427215 other downstream 265588 14637781 ~ 14666508 (+)
ly97.3 LOC108280687 other downstream 455049 14827242 ~ 14828778 (+)
LOC113533366 NA other downstream 691528 15063721 ~ 15066371 (+)
LOC113533365 LOC108280254 other downstream 710045 15082238 ~ 15101461 (+)

Expression


Co-expression Network