fem1a (LOC108280701,LOC108433090,LOC105903982,LOC106600049,LOC107384124,LOC105020399)


Basic Information

Item Value
gene id fem1a
gene name LOC108280701,LOC108433090,LOC105903982,LOC106600049,LOC107384124,LOC105020399
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13422324 ~ 13425966 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925726.2
ACAACACCGACGCCATTTTGATTGTAGCcttaaaatggcagaaaatgcAGAGCAGAGGCGGAGGTTCACTAAGGTTTTTGTGTTTAAACGTGAAGGGGAaactttgttttgttgtttccaCGCAGACTGAGCATTGAGAGAGACTGAGCGAGACACATGCGGGGAAAATGGATATAACGACTGCGGTGTTTAACGCGGCGAGAGACGGGAAACTGAAACTTATCCAGAAGTTGCTGAGCAACAAAACTCCGGAGGAGTTAGAGGCGCTCGCTGAGGAGAAGACGCAGGGGGGCACGCCGCTCCTGGTCGCCTCCCGGTACGGACACTTGGAGGTGGTGAATTATTTACTTGAATATTGTAAGGCGAACGTAGAGCTCGGGGGTTCGGTTAATTTTGATGGCGAGACGATTGAAGGAGCTCCTCCGCTCTGGGCGGCTTCTGCCGCGGGGCATTTGCCGGTTGTGAAAACTCTCTTAAAACACGGCGCCTCGGTTAATAACACAACCCTCACCAACTCCACTCCCCTGAGGGCTGCCTGCTTCGATGGACACCTGGAAATCGTGCGGTATCTCGTCGAACATCACGCCGACATGGAGGTCGCGAACCGCCACGGACACACATGCCTGATGATCTCCTGCTATAAAGGGCACCGAGAAATCGCCAAGTTTCTGCTGGAGCGCGGCGCTGACGTGAACCGCAAGAGCGTGAAAGGCAACACTGCGCTGCATGACTGCGCCGAGTCTGGAAGTCTGGACATCATGAAGATGCTGCTTAAGTGCAAAGCTAGGATGGAGAAAGACGGATACGGTATGACCCCACTGCTGGCCGCCAGCGTTACCGGTCACACCAACATCGTAGAGTACCTCGTGCACCAGCCCAGAGCTTCGAGAGAGGAGTGCATCGATGCCCTGGAGCTCCTGGGCGCAACTTACGTAGACAAGAAGCGCGATCTGCTGGGCGCCATGCGCTACTGGCGACGAGCAATGGAGCTCCGACAAGCAGGAGATAGAACGGGCTTCCTGGCCAAGCCACCCCCTGGCCCACCCGTTCCAGCGTACGACTGCGCCCGAGAGGTGAACACGGCGGAGGAGCTGGAGGCCCTGATCACCGACCCGGATGAAATGCGGATGCAGGCACTCCTGGTCCGAGAGCGCATCCTGGGCCCTTCACACCCAGACACATCTTACTACATTCGCTACAGGGGTGCTGTCTACGCTGACTCGGGAGACTTTGAGCGCTGTGTCAGTCTGTGGAAATATGCACTAGACATGCAGCAGAGCAACCTGGACCCACTGAGCCCCATGACAGCCAGCAGCTTTTTGTCATTCGCCGAGCTTTTCAGTTTTGTCCTCCAAGACCGTGCGAAAGGTGCGCCAGCTGCCCGCGTTGCCTTCCATGACCTGATGGGCGTCCTGGCCAAGGGTGTGCGTGAGGTGGAGCGGGCCGTGGCACAGCGGGATAATCAGCCTGATGCGGCGCAGTTCACTAAAGCCCTTTCCATCATCCTCCACCTCATATTCTTGCTGGAGAAGCTGGAGTGCAGTTCGGCACAGGAGCACCAGAAGAAGCAGAGCGTGTACCGGCTACTCAAGCTGAACCCGAGGGGCCGGAATGGCTTCACGCCCCTGCACATGGCTGTGGATAAGGACACGACGGCGGTGGGCCGTTACCCAGTGGGGCGTTTCCCATCTCTGCCCGTGGCTGCGCTGCTGCTGGAGTGTGGCGCTGACGTAGACTCGCGTGACTCGGACAACAACACGCCGCTTCACGTGGCAGCCCGGAATGGCTGCCCCAAACTGATGACGCTGCTGGTGCACTCTGGAGCACACTTTGACGCAACCAATGCACAACGCAAGATGCCTTACGAGCTGCTGGAGGAGGCGGGCGGAGCAAGGCATGCACTGCACCCTCTCAGCCATGTCACGCTGCAATGCCTGGCTGCCCGGGCTGTCGAGAGACACAGAGTCCCCTACAAGGGGCTCGTCTCAGAGGAAATGGAGGCCTTCATCGAGCTCCACTGATCTTACCTCAAAATCCTAATTTGACTCCAGGTTCAGATCACGTCCTCTGTTTCTGAACAACCTCCTGAACCTGTCTttgtctcttctctccctcctctTGTCTCTACATCAGGTCTCACCTGTTTCTGAGGACCGTCTTGATGAAATGGAGGCCTTCATCATGTTGCACTGGCATTAACTCACCATCCTCCCTGTCTTCCTGCTCCATCTGACCTTTGTCCCTCTCTTTATCAAGCAGACTAAATCTTAAGCCTCCTCACCACTTCCTCAGGCATCATCTGAATCACAGCAATAATCACAAACAGGGAAAGATTTGTACTTTCAGCCATGTGTGCTCATTTATATacatcttctctttttctctctgccttgtAAGGgcttgttgaagaaaaaaaattacaagaacTCAGACTCTTTGATGCTCTAGAATACTGTTTGAGGGGGAAAGCGGACTTTGCGTTTGATTCAGGCTTTATTTGTAAtctgcctctttttctcttttctgccttttttttcctttacgtTCCCTTATATTCCTCTGCGAGCAGgaaatgaacaatttttgcctgtttgtatttgtgtataaaGTTTAAATGGTGACAGGGTGGATTAAGGCAAGGTTGAAAATCCGCATTATACTTAGCAGCGATGCACTTCGCTGACTGACtggctgtatgtgtgtaagagaaTGAAGTGTTAGTTTAGTCAGTTTTTGCATGCTCATTTTGTAATGCAAGAACAAAACTCACATCAGTATTGGTAATCAGACATTTTGATCTGATGATTTTCTTTCATCAAATCTCATATACTAtgatgtggttttatttaactTCCCCATGATGTAATATCAAAGACGTAGGCCTGTAGGCTGATGCCTCTTGTGCCAGTTATTAGCCTCCAGTGTTCTTTCGATTTGATGCATTTTGCTTCTAAAGCACTaagtacaattttttattttttttttcttgtttgttcttTAATTGTCAGAACAAGCAGTACTAATGTGGCTAGCAATGAATGAAAGCCACTGTTGCTGTGCTGATGAGGTCATGCTAGCTGTGGACATTAACATCCGTTTATTCTTATCCACATCGGCGTGCTTTGGTTGAATTACCCCTTGTATAAGCGTAGCTAAGTGGGTGATGGCGGACTCATGGAACATCTGCGGTATGCTTTGCACTTCATTAACCACACGAGAGCAGGAGAGAAATTGGCCTCTGTGGCTTCTCCCTTCTTTGTACAATTATTCTAACATTTAGGACTTGGCACTTTACCCAGTATGAGACGTCTGGGGTAACCATTGATATCTATGCAGTTTTATCAGCAAAGGTGGATTTACATCAACGGATCTGGCAACCCGGGTCCGTTCAAAGTAGGACAGCCGACTCAACATGTATGACTCTTCTTGCAGTCTTATTTCTGATTGTCCTTTCTTTTTATGTCAACATGCTGGTTTCACTGTAAATCCTACTCTAATGAAAGCACTTTGAAACATGCTAACACTACTTAGCCTCTAAAGAAGCAAAGATCCTGTCTCAGTGATTTGTGACAGGTGTGATTAATTTAAGACAGTTCAAATGGGTTTGGAGATGCCTGAATAAAATTCAAGTATCACATCTgga

Function

NR:

description
PREDICTED: protein fem-1 homolog A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925726.2 True 3643 mRNA 0.50 1 13422324 13425966

Neighbor

gene id symbol gene type direction distance location
LOC113533546 LOC108280911,LOC105904033,LOC106599985,LOC105020641,LOC106569538,LOC103047033 coding upstream 11513 13390167 ~ 13410811 (+)
prkab2 prkab2,LOC108280523,LOC108433095,LOC102781441,LOC101470867,LOC100694198 coding upstream 116887 13299508 ~ 13305437 (+)
sema4e LOC108280345 coding upstream 137072 13267754 ~ 13285252 (+)
stap2a stap2a,LOC108280350,LOC108433098,LOC107713653,LOC107698505,LOC107757807 coding upstream 156877 13253610 ~ 13265447 (+)
sh3gl1a sh3g1,LOC108433099 coding upstream 180387 13217490 ~ 13241937 (+)
LOC113533157 LOC108280702,LOC108433088 coding downstream 11069 13437035 ~ 13565203 (+)
LOC113533215 LOC108280868 coding downstream 145743 13571709 ~ 13587075 (+)
ranbp3b ranbp3,ranbp3b,LOC108439867,LOC107750915 coding downstream 210499 13636465 ~ 13658131 (+)
LOC113533233 piezo2,LOC108414168 coding downstream 295000 13720966 ~ 13807258 (+)
rab12 rab12,LOC107696134,LOC107750912 coding downstream 394699 13820665 ~ 13834815 (+)
LOC117599983 NA non-coding upstream 941 13418555 ~ 13421383 (+)
G319382 NA non-coding upstream 10717 13363825 ~ 13411607 (+)
G319342 NA non-coding upstream 116181 13239147 ~ 13306143 (+)
G319340 NA non-coding upstream 177054 13202033 ~ 13245270 (+)
G319275 NA non-coding upstream 264595 13156524 ~ 13157729 (+)
G319415 NA non-coding downstream 79140 13505106 ~ 13510727 (+)
G319755 LOC108280256,LOC106569623,LOC108439880,LOC107687929,LOC107754609,LOC107596296 non-coding downstream 163633 13589599 ~ 13590316 (+)
G319867 NA non-coding downstream 430999 13856965 ~ 13894441 (+)
LOC117595740 NA non-coding downstream 478561 13904527 ~ 13910280 (+)
G319886 NA non-coding downstream 482897 13908863 ~ 13909635 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other upstream 267797 13021142 ~ 13154527 (+)
G319170 NA other upstream 619305 12765055 ~ 12803019 (+)
G318439 NA other upstream 1952825 11467299 ~ 11469499 (+)
per2 LOC108280459,LOC108439864 other upstream 1957555 11399884 ~ 11464769 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other upstream 2688236 10730346 ~ 10734088 (+)
LOC113533270 mtcl1 other downstream 411467 13837433 ~ 13897914 (+)
zmp:0000000521 zmp:0000000521,LOC108280721,LOC107696078,LOC108442439,LOC107596226,LOC105888700 other downstream 654283 14080249 ~ 14127012 (+)
rab31 rab31 other downstream 960272 14386238 ~ 14466753 (+)
tle2c zgc:136336,LOC108280589,LOC108427215 other downstream 1211815 14637781 ~ 14666508 (+)
ly97.3 LOC108280687 other downstream 1401276 14827242 ~ 14828778 (+)

Expression


Co-expression Network