snorc (c20h2orf82)


Basic Information

Item Value
gene id snorc
gene name c20h2orf82
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 11535133 ~ 11544725 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925732.2
CTCTTCGACATTGAGCCCCTGGTCTGGAATTAGTGGTGAGACGCTTGGTGAACAGACAACATGGCCTTTTACAGAAGCTTCAGCATGGAGTCCAGATTTCTCTTCCTCACAGTTTTTGCACTCTGTGTGGCTTTTGTACGTACAGAAACTGTGGATAAGGCTTCTCCCACGCTACATAGCGATAACCAGGGCACGCAGTCCGGAGATGATGGAACAGATGCAGGCCAGGTCACAACTAAAGACCCAACTCAGGACCTGACGCAACCCACCTTCGCTATAGATTACACTGACAACCTGGACACCACGACGATGGAGGAGGAAGgtgTCCTTGGCCCAGGTGCCATCACAGCCATTGTCATTGCTGTGTTCCTCGGTGCCTCTGTTCTCCTCGCCCTCGTTGTCATCACACTCAGAAAATTCACCGCCTCTTAGAGCAGGATGACCACCTGTTTATaacctctgtctgtctgtctgtctttctatctctctctctctctctctctcactcacacacacatgcacacacacttaatcaTATCTTTGTTGTCTTCTTCAACTTTCAAACTCGGCAGGTCCCTTGTGGTTGGCATATGAGTGGTGACATGGCCCATTCATTTGCAGAAAGTGTAACAACTAAGCCATAGCCGAGGCTATTTTCACTTGATGATGGTCAGTTCATTTCTCATAGGTCTAAAAGGTCTTCcatgttttccagcacaaagtAGCAGGTTCTCTAGATTCAACTTCACAACTGTAACTGATCCTTGatcatatattttgttttcaatGCTTTTGGTTTCTGTTTTCTGAGATGTACATTATTTGGAGTCATAGAAAAGACACTTAAATTCAACTTGTATTCtatattttgtaatttacaAAGGCCTTTCTCTCTACAAATGTCATTGTGATGTTAAATGAGCTCACACTAGACTGTGGAAAGTAAGCAGATGCCTACATGTTCAAATGTCTACATTTGTAAAGAAACAGTGTACATCTAATACACATCTAACTATCTCGAAAATTTGTTAGATGTGTATTAGATGTGCACTGTTTCTTTACAAATGTAGAaacgcaggtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttttcaaatAAAGTAGGAGAAAATGTACTATGCAGAACAGAAtcaatgcattttattattatttttttattttagcaaatGTGCATTTGGTTATCGACAAATTTGTGTTAGGCTTAGagttacagttttatattatatgtaatgCTATTATTATAATCAGCTTATTATGATGCTAGAATTGAAGTGTCATTAGATGTTTATACTCATCTTTAGATTAACACTATATTCATTAGCACGAAAACACGTCTGTTTTCATGtctcagaaagaaagacagaatctTGATCAGTCATCATGAATTATTCACTGAAGTTGATACTATCTGCTTTTCCTCTTACTCTCATCAACTCTTCACACCactgttttaaaatgtctgCTTTACAGTAACAAACTgaaaagatataaataaaaacaaatctttaaCCTGA

Function

NR:

description
PREDICTED: uncharacterized protein C2orf82 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925732.2 True 1585 mRNA 0.39 3 11535133 11544725

Neighbor

gene id symbol gene type direction distance location
gigyf2 gigyf2,LOC103130361,LOC103143041 coding upstream 1572 11498327 ~ 11533561 (+)
itm2cb itm2c,LOC107569273,LOC107679406 coding upstream 55582 11473845 ~ 11479551 (+)
LOC117599968 LOC108280463,LOC108280461,LOC108280465 coding upstream 160424 11357570 ~ 11374709 (+)
LOC113533220 LOC108280463,LOC108280465,LOC108280461,LOC108428334 coding upstream 192994 11324127 ~ 11342139 (+)
LOC113533219 LOC108280465,LOC108280463,LOC108280461 coding upstream 219255 11308021 ~ 11315878 (+)
trnap-agg_14 NA coding downstream 3383 11548108 ~ 11548179 (+)
trnai-aau_17 NA coding downstream 4390 11549115 ~ 11549188 (+)
trnag-ccc_6 NA coding downstream 28102 11572827 ~ 11572897 (+)
pax3a pax3a,LOC108280216,LOC108439877 coding downstream 51974 11596699 ~ 11622845 (+)
LOC113533522 NA coding downstream 871785 12416510 ~ 12428531 (+)
G318426 NA non-coding upstream 131077 11403264 ~ 11404056 (+)
G318331 NA non-coding upstream 365994 11106795 ~ 11169139 (+)
G318332 mbnl1,LOC108280526,LOC107567699,LOC107679403,LOC107745615 non-coding upstream 415306 11112953 ~ 11119827 (+)
G318273 NA non-coding upstream 525987 11007948 ~ 11009146 (+)
G318248 klhl24 non-coding upstream 547557 10959921 ~ 10987576 (+)
G318647 NA non-coding downstream 229218 11773943 ~ 11774148 (+)
G318658 NA non-coding downstream 254233 11798958 ~ 11799181 (+)
LOC117599957 NA non-coding downstream 288583 11833308 ~ 11846411 (+)
G318683 NA non-coding downstream 326042 11870767 ~ 11870966 (+)
G318697 NA non-coding downstream 480483 12025208 ~ 12025443 (+)
G318439 NA other upstream 65634 11467299 ~ 11469499 (+)
per2 LOC108280459,LOC108439864 other upstream 70364 11399884 ~ 11464769 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other upstream 801045 10730346 ~ 10734088 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other upstream 966226 10563821 ~ 10568907 (+)
capn10 capn10 other upstream 972139 10536431 ~ 10562994 (+)
G319170 NA other downstream 1220330 12765055 ~ 12803019 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other downstream 1476417 13021142 ~ 13154527 (+)
LOC113533270 mtcl1 other downstream 2292708 13837433 ~ 13897914 (+)
zmp:0000000521 zmp:0000000521,LOC108280721,LOC107696078,LOC108442439,LOC107596226,LOC105888700 other downstream 2535524 14080249 ~ 14127012 (+)
rab31 rab31 other downstream 2841513 14386238 ~ 14466753 (+)

Expression


Co-expression Network