ncapd2 (ncapd2,LOC107692903,LOC107659972,LOC107749205,LOC107557881)


Basic Information

Item Value
gene id ncapd2
gene name ncapd2,LOC107692903,LOC107659972,LOC107749205,LOC107557881
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10838755 ~ 10860296 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925735.2
TTTGCTGAGTGGGCGGGGCGATGACGCACTTCCTTTGGCGCGCTTGTGGTACAATTCAAAGATTCGGAGTCAACCGTTAGCGCGTTAACAACAACTTAGAGCACCTCAGCTTTTAGTCGTATATAAAGCACTGATATGTGCTGAAGTTATCGGCTCTGTAACAACATGTCGTGGGATTTCGTGGTGCCTGTGACTCTGGATGATCTGCTGAAATCCGGAGCCATCAATCAGTATGTGGTCCAGAGCGTGCAGTCACCTAAACAGCTGCCCTCCCACCTCCACAGccttaaagctgctttgcgaAGTCAGGGCCCACTGTGCATCTTGGAACATTTCGACACAGCATACAGCGTCCTGCAGAATTTTCGCGCAGTGGATGTGACTTTGAAAGAGGACACGCTGGAGCTTCTCATACAAGTGGTCCAGGGCCTGTCCATTTCCTTGCCGCCCCTCCTCCTGTCTGGGTCTTTGTCAGCAGCAGACCGCAAAGAGCAGCTCAATGCGGTCAAGATGAGCGTCTTTCTGCTCTGCAAACTCACTGAATATCTGGAGAGTGACTCCTACAGGGAGAGTGTTGTCACTGCACCCAAGggcCGTAAAAAGGAGAAGCCTTGTGGTAAGGGCTTGCTGCATTGGGACAGTGAGCGTGAGACGGTGTTGCAGTGTCTGACCCAGTTGCTCCAACTGGATATCCGCTCTCTGTGGAGCCTTTCTCTGGTTGAGGAAGAATTTGTTAGCTGTGTGACATGTTGTTGCTATAAGTTGTTGGAGAATCCCACGATCAGTCACATGAAGAGTAAACCCACACGTGATGCTATCATCCATGTGCTGGGACTGATGGTGAAGAAATACAACCACATGCTCGgagcATGTGTGAAGGTGATTCAGCTGCTGCAGCACTTTGAGCAGCTCTCTTCAGTGTGTGCACAGGCAGTGGCAGCCTGGAGCTCAGAGTATGGAGTCAAAGCAATTGTAGGAGAGATCATGAGAGAGATCGGGCAGAAGTCCAGTGATGAGTTGGCTAGAGAGGGATCAGGTGTGAAGGCCTTCTCTAGCTTTTTGTCTGAACTCAGTACCCTGGTTCCTGAAGCCATGATCCCTAATATCAGTGTGCTTCTCACACATCTGGATGGAGagAGTTCCAGTATGCGTGTGGCGGTGTGTGAGGTGTTGGGGGAGGTGCTGGTACGTGTGTTAAGTGGTGATAAATTAGACGATTCTGGTCGAGCAGATCGAGACCGTTTCCTCGACACTCTCCAGGAACACATCCATGACACACATTCCCACGTCAGAGCTCGAGTGCTTCAAGTGTATACTCGCATTGTGAACAGCAAGGCTTTGCCATTATGTAGATACACTGAAGTGATGGAATTGGCAGTTGGTCGTCTTGGTGATAAATCAGTCCATGTGTGTAAGAGTGCCATCCAACTTGTGGCTGCTTTCATCGCCCATAATCCCTACAGCTGCAAGCTGAGCAGTGTGGACTTAAAGAAACCTCTGGAAAAAGAGACAGCCAAGCTcaaagagatgagagagaacATGAGGGAGAAAGCACCAGTCCCAGTTATCTCGGCGTCGGATCTGTGGGCTGCAATGGAGCCGGAGGTGTCGCACACGGTCAGAGCTCATCTGGAAGCTAGCAGTGACccagagatggaggaagaggatgaagagaaagaaagcgaACATGGCAGCACTGACAGAGACACTGCTGTCCGAATTGCTCAGTACCTCAGACACAACAAATACAGGCAAGCAGTGCGGCTGTGTGTGCAAGCTCACACTCTTTACCCAGAGTCTCCATTCTTCTCTGCTCTGTCCGACATGAATGCAGACACACTGATTAGCACACTGGCTTCACTTTTTAAAGGCCCTGAGGAAGAACAGGCTTCAGATATGGGAGCGAGGGAGCAGCCCCCCACACcacagaaggaaagagaaggagagagtgatGAGAAGGAGAGTGAGCTGAAGAAGCAGGAGATGTTGGTTCAGTAcctgaaagacacagagagcTTTGCCCTGCAGGTTGAGAGAGCCATTGCGATCATTAACAACATGCTGTACTGGAAAACCACTACAGTGGTTCAGGAGGCAGTACAGTTCTGTGTGACCGCATGTGAGTTCAGCGTGGCAGACTCGGTGTGTGGGGTGAGGAAGATGCTGCCACTGGTCTGGTCCTCCGATGCTGCAGTCAAAGATGCTGTCATACAGGCATACAGACGCCTCTACCTCAACCCTCAGGGAGACAGcaccagAACCAAGGCCCAAACTCTTGTGGACAGTCTGTGTGAGTTGATGGTTGATGCCTCACTGGGAACCATTCAGTGTTTGGAGGAGATAgtgCAGGAGTTTTTCAGCACAGAGAGTGCTCTGCAGGCGTCTGTGGTGCAGGTGCTGTGGGAAAGATTctcaggaaagagagagacctCGGCACTGCGCAGGAGAGCTGCAGTACTGCTGCTTGGCATGGCCGCACGagctgagAGGGAAGTTGTACTCGGTAATCTGGACACACTCTGCTCTGTTGCTTTGGGAGAGAAGGTGACTGAAGATTACTTGCTGGCCAGAGACACTGTTATCACCATCACCAATATTACTGACCACATAAGGCAATCTAAAGGAGCTGCGTTCAGGCTACCGATGGACCACCATCTCTTCAGCTGTCTGACCCAGGCTGTTGCTGATGGAGTGATATTGGCCGAGCCCCACTGGCAGACTTTCATGGAGCAGGCCGTCCGCCTCATCTACTTCCTTGCCGAGTCACCCGATCAGCTATGTGCTCGCCTCCTCCAACGCTCGGCTCACCTCCTGCTGGAGCAGATTACAGAGAGTGGGGAGCAGTCACAAATGTCAGAAGGCTCCCAGGACTCCCAGGAGCCAAAAGTAAACTGTGTGAGTCTGGCAcagctgctctctctgtgtggaTTCGTGGCCTTCTGGCAGGTGTCTCACCTGGAGAGAAGTGTGAGTGCTGAGCTCCGGCGGCGGAggggagagaaggaggagaaagaggagaaggagaaagggcCTGTCAACAAGAACAAGGAAGCCAATGACAGCTGTGTGGAGGAAGAGCTTGGCTTGACTGGTGCCTCAGCAGAGGACACAGAGGCAGAATTCATACGTAAAATCTGTGAAACGGAACTTTTAGCCGAAGGGAACAtgctcagtgtgtttctgcCTTTGCTGGTGAAGGTGTGCAGCTCACCAGGCCGATATTCTCATACCCAACTCACCACTGCTGCCTGCCTCGCCCTCTCCCAGTTCATGATGATCAGTCCAGCAGTGTGTAAGGATAATATCCGTTTACTCTTCACGGTGTTGGAGAAATCTCCTCTCCCAGTCGTCAGAGCAAATGCTATCATTGCCCTTGGAGACCTGACTGTTCGCTTCCCCAACATTCTGGAACCCTGGACCCCCAACCTGTACGCCAGGCTGTGTGACGAAAATGTGTCAGTGCGCCTGACGGCCATCACGGTTCTGACCCAACTGGTGCTAAAGGATGTGAtgaaggtcaaaggtcaggtcAGCGAGGttgctgcactgctgcttgaCCCTGAGCCACATATTGCCAATCTTGCAGTCAACTTCTTCAATGAACTCTCTGCAAAGGATAATGCTATCTATAATCTACTGCCAGACATTATAAGCAGACTGTCAGATCCAGAGAGGGGGATGAAAGAGGAGGACTTCAGCACTATTATGAAGCAGCTCTTTTCCTACATAACGAaggagaggcagacagagagttTGGTGGAGAAGCTCTGTCAGCGTTTCAGAACAGCAAAGACTGAGCGACAGTGGGCAGATCTGGCTGTATCTCTGTCACTGCTCTCCATGTGTGAGCGAGGCTTTAAGAAGCTGCAGGAATGCTGGGAGTGTTATAGTGATAAACTTACAGAGGATGCAGTTTACCAACCTCTGCTCTCCATCTTGGCCAAACTCCGCCGCAGAGCAAAGCCCCAGTTTAAGGCTCAGGTAGAGGAGTTTGAGAAGAAGTTAACAGCAGTGCATACAAAAGGTCtggaaaatgtggaaaatgaggagagagagcagcagctAGAGCAGCAGAAAAACACCCCTGTGCCCAAGAACGCTCGCAGACCAACACGAGGTCGTGGGAAGTCTAGGATGGATGACAGTGACTTGGTGACCCCCAAAACCTCCCGTGCTCGCCCCAAAACAATTATCACCTTTAGCAGTGACGAAGCAGAGGAGGAAGAAGatGCTGTGATGGCAGAGAGTGAAACTCCAAAAGTCACCACACCCATCGCACGTACCACACGCACTCGTCTACGCCACTAGCCCTCCTTTTCTTCCTATCACCTGAGTCTCTGCCAACCTTCCCCctgttttaatctttttatttgtttattctttcCATTCGGAATGCacttttttcatgatttttctttttttcaatattataCGTTTTTATCCatgcttttataaaaattttTCTATCCAGTTTAAAACAGTAATTTTGTAACATATCTGTGCTAGGCTGCATCATTATTACGTAATTTGGAATAATGATCTTAATAAAAATAGCCTAAAAAGTA

Function

symbol description
ncapd2 Predicted to enable chromatin binding activity and histone binding activity. Acts upstream of or within mitotic sister chromatid segregation. Predicted to be located in chromosome and nucleus. Predicted to be active in condensed chromosome, centromeric region. Is expressed in nervous system; optic cup; pectoral fin; pharyngeal arch 3-7 skeleton; and proliferative region. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly. Orthologous to human NCAPD2 (non-SMC condensin I complex subunit D2).

NR:

description
condensin complex subunit 1

GO:

id name namespace
GO:0007076 mitotic chromosome condensation biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K06677 YCS4, CNAP1, CAPD2; condensin complex subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925735.2 True 4565 mRNA 0.50 32 10838755 10860296

Neighbor

gene id symbol gene type direction distance location
mul1a LOC108280869 coding upstream 119606 10711708 ~ 10719149 (+)
vwa5b2 LOC108280745 coding upstream 134263 10655409 ~ 10704492 (+)
ccl20a.4 NA coding upstream 304304 10532984 ~ 10534451 (+)
kirrel1b kirrelb,LOC108280344,LOC108428281,LOC107749112,LOC107659821,LOC107557870,LOC107721762 coding upstream 491367 10291830 ~ 10347388 (+)
cadm3 cadm3,LOC107749121,LOC107600075 coding upstream 550531 10196108 ~ 10288224 (+)
acsm3 acsm3,LOC108428295,LOC107749205,LOC107682913,LOC107735424 coding downstream 1663 10861959 ~ 10878656 (+)
map6d1 LOC108280841 coding downstream 19945 10880241 ~ 10897751 (+)
LOC113533503 cul3,LOC108261246,LOC104924156,LOC100710156,LOC107099750,LOC108240497 coding downstream 327502 11187798 ~ 11221863 (+)
ap1s3b ap1s3b,LOC108280899,LOC108428267,LOC107738797,LOC107660160,LOC107679405,LOC107552497,LOC107567705 coding downstream 377943 11238239 ~ 11253682 (+)
LOC113533219 LOC108280465,LOC108280463,LOC108280461 coding downstream 447725 11308021 ~ 11315878 (+)
G318031 alg3,LOC107692886,LOC107730451,LOC107557882 non-coding upstream 131247 10706814 ~ 10707508 (+)
G318016 NA non-coding upstream 190562 10647921 ~ 10648193 (+)
G317967 NA non-coding upstream 256463 10582093 ~ 10582292 (+)
G317964 NA non-coding upstream 263208 10575313 ~ 10575547 (+)
G317963 NA non-coding upstream 263603 10574814 ~ 10575152 (+)
G318248 klhl24 non-coding downstream 99625 10959921 ~ 10987576 (+)
G318273 NA non-coding downstream 147652 11007948 ~ 11009146 (+)
G318331 NA non-coding downstream 246499 11106795 ~ 11169139 (+)
G318332 mbnl1,LOC108280526,LOC107567699,LOC107679403,LOC107745615 non-coding downstream 252657 11112953 ~ 11119827 (+)
G318426 NA non-coding downstream 542968 11403264 ~ 11404056 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other upstream 104667 10730346 ~ 10734088 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other upstream 269848 10563821 ~ 10568907 (+)
capn10 capn10 other upstream 275761 10536431 ~ 10562994 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other upstream 860839 9958993 ~ 9977916 (+)
G317390 NA other upstream 1423591 9412323 ~ 9415164 (+)
per2 LOC108280459,LOC108439864 other downstream 539588 11399884 ~ 11464769 (+)
G318439 NA other downstream 607003 11467299 ~ 11469499 (+)
G319170 NA other downstream 1904759 12765055 ~ 12803019 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other downstream 2160846 13021142 ~ 13154527 (+)
LOC113533270 mtcl1 other downstream 2977137 13837433 ~ 13897914 (+)

Expression


Co-expression Network