LOC113533554 (LOC108280165,LOC108427150,LOC107724989,LOC107549819,LOC107552683,LOC107671817,LOC107696585)


Basic Information

Item Value
gene id LOC113533554
gene name LOC108280165,LOC108427150,LOC107724989,LOC107549819,LOC107552683,LOC107671817,LOC107696585
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15412738 ~ 15460090 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925767.2
aaatacagagagagagagagggagagagagagagagagagagagagagagagagtcattttGTGGGAggctgagaaaagagaggagcAGGCACATTTCCCACTCCCATTTTGTCATCTTTAATGTCCTTGCTATTTAACGAAGACTAGTTGCTACATCCCATtacacgtctcacacacacacacacacacacacacacacaccaggctgtaggaggaggagaggacagAGTGATTGGCATGTGGGGAAAACACACttgcacctacacacacctggagcagagGAAAAACACGGACGCCGTCGCCTGACTTatggaaagagggaaagaggtGACCGGGAGCGCgcgacaaaacacacacacacgcacgcacacacacacacacacgcacgcaaatacctatacatacacactctcactccgACAGACAGATGTGGCGGGAGCAGGAGGCACGCTCCAGCTGTTGGTGTGTGGTAGACTGATTCATCTAGAGTGAGGTGGTGGGGTGCTCATGGCTGCCTTATGGGGCCTGGGCTGGCTGGGTGTGAGCCTCACCCTGTTGGCCCTCGCCCCGGTGTGCCAGAGCTGCCCGCCACGCTGTGACTGTGTGGCTCAGCTCCGCTCCGTGTCCTGCCAGCGAAAGCGTCTGTCGGGTGTACCTGAGGGCATCCCTACAGAGACCCGGCTGCTGGACCTCAGTCGGAACCGGCTACGCTGGGTGTCACCAGGAGATCTGGCACCATATCCACGGCTGGAAGAAGTGGACCTCAGTGAGAACCTCATCTCCACTCTGGAGCCCAATGCCTTTGCCAGTCTACAGGCACTGCGAACACTGCATCTTCGTGGAAACCAGCTGAAGCTGGTGCCTATGGGCGCCTTTGCTCGCCTGTCAAACCTCACTACCCTAGACCTGAGTGAAAACAAGATTGTCATCCTGTTGGATTATACATTTCAGGACCTGCACAGTCTCAAACACCTTGAGGTTGGTGACAATGACTTGGTCTACATCTCTCATAAAGCTTTCTCAGGATTGCTGGGTCTGGAAGACTTAACCATAGAAAGATGCAACCTGACTTCAATCTCTGGTCAAACCCTATCCTACCTGCGCAACCTGGTCACCCTTCGATTACGCCACCTCAGCATCTCTACCATCGAAGACCAAAACTTCCGCAAGATGTCCGCTTTGCGGGGGCTAGAGATAGACAATTGGCCATACTTGGAATACATCTCCCCCTTTAGTTTCCAGGGTCTAAACTTGACCTGGCTGTCCATTACTAACACCAACATTACTGCAGTCCCTTCTGCTTCTTTCCGCAACCTTGTCTACCTGACATCCCTTAACCTCTCCTACAACCCCATATCTGTGCTGGAACCCTGGGCGTTCAAGGATCTTATAAGGCTGAAAGAGCTACACATGGTCAGCACTAACCTGCAAGCTGTGGAGCCTCATGCTCTGGGTGGTCTGAGGCAGATTCGGGTGCTGAACCTCTCCAACAATGAGCTGGTCACACTGGAGGAAAGCTCCTTTCATTCCGTCAACAGCCTTGAAACTTTACGAGTAGACGGAAATCCACTTTCTTGCGACTGCCGGCTTCTCTGGATTCTGCAACGCAGACGCACTCTGAACTTTGATGGGAAAATGCCGATCTGCGCTGCTCCACCTGAGGTACAGGGTAATATTCTGAGCAGCTTTCCGGATTCTGCATTATTTGACTACTTCACTTGCCAGAAGCCGAAGATTCGCAACCGGAAGCTTCAACAAGTGACAGTGCGTGAGGGTCAGTTGGTGTCCTTCCTGTGTCGTGCTGATGGTGAACCGGCGCCTGCCATCATCTGGATCTCACCACAGCGGCGAAAGATCACCTCGAAAAGCAGCAGCAGGATCACAGTCTTACCAGGTGGAACGTTGGAGATCCGATATGCCCAGGTGACTGACAGCGGCACGTACATCTGCATCGCCAGCAATGCAGGTGGCAACGACACCTACTTTGCCACACTGACGGTGAAAGGACAACCAGTGGACCACGCTCTGTTCGCCAACCGTTCTCTGTATGCGGTGGACTTTAATGACACTGGTCTGAACAGTACACGTGTCTTCCTTAAGTTCACACTTGACCTCACCACAATCCTGGTGTCTACAGCCATGGGCTGCATCACCTTCCTGGGTGTAGTACTCTTCTGTTTCCTGCTGTTGTTCGTGTGGAGCCGCGGAAGGGGCCAACGCAAGAACAACTTCACAGTAGAGTACTCATTCAGGAAGACAGAGGGGCCCACTACCAGTTCGACCTCTGGAGGGACCCGCAAGTTCAACAtgaaaatgatatgaaacaACGCAGCCAGGGGCCACCTGGGGGAGGCATAAACAcccaacataaacacacagctctgactCGCAGTAATATCGGAAGATGTTTTAGGGACTAATGTGATTAAACTTACCTTGATCTCACTGCCTTTGGAAAAGGTGTTAATATTTCAATTAAGTCACTTGGATTTGATAAGCTAGTAAGTTTCCTTTACCTAAACCTTATTTGCTTGGATGGTTGGTTGCCATTGTTACAACGATTTATTACTATTGCTAATGATTTTGTTATGCAAAATTTAAACACCACCTTAGAGATATATGACCACCAACCAATGTTGCAGTAAAAATCCATTAATGaatttaatatacaatatagtGGTTCTAACAAAATGACATGCAAATTGAAATGCTAATTTAGAAAATACTGAATGCACAAATAGCATTTGTcatgttattaaattaaacaccCATCATGCTACAGTTGAAAAACCAACTGGCCAATCAAATGGCTAAAGCCATTGAATCATGAGTTTATGAACTACAAGCTTGGCTTTCTGTCATGTCTGCGATGAGGTGCTGTGTAAGTTGGGACAAGCACACTGGCCGCAACACTGTGAGTGCACTGCTGCTACTGCCGTACTGGTATTCAGTTAGCAGCATTGTACTATAGTGGATATAAGCTAATGTGCAGCCAGAACCTCAGGGTCTGGTTAGGAAGCCAAGCCTTGGGTACTGGCTGCACTGTTAGTGGATGTATAGTGCTTATACCAGGCTGGTGGAGGGCTGATATGGGGTATTCTCTCATATCCTCTCCATCGCCTGGCCTAGGCACGCACCGATGACCCATAAGCCTTCATGGGGGGAGGCTGCGGGCATCAGGTCCGTTTGATGTCAGACACTTGCTGTATGTACATGTCtacaaatgtacattttaaccCATTATCAAGCAACACCTGCACAATACAGTTATAGCTTTATTTGTTTACAATGCATAGTACTATGCAGGGAAGATGTGAGACATACACAAGCTTTCTTCAGCACACTTGAGTTTTCTTGTGTTTGCATTTCAGGGAATGGTAAAATAATATGACCAgagcttgttttatttttctattaagCTACTGTATAGACCTTTGTTTTTAGGCGAATGTCATTAATTAGTGAATATGTTAATTTGAGAAGAATGTTGTGTTCATGGTTATTGCCTTAGCTTTACCATgcacattcatttaattatgctAATTACTGCTTGGTTTTATTTTGCAGGCACAGGCAGTAATAGCATCAAATGCAATAACAGAGAAAATCTGGTTTACTGCCATTTGCTTTTGAGACTTTTTATTGGATTAATAATGTAACATAGGCATGACTCTTTTCACGGTTATACTGAAGCAGTTCTTTCTAAAGTTGGCACATTGAAAAACTcaaaataacaaatcagatgCAGACATAAACATGATGTGTCATTTAATGCCATTTATTAAAGGTGTTGAGAAGTTTTAGATCATTTTATATAACATCATGACAGTAGAAACACATGGAACACACTTATATAAGAAACACATACATAGATAAGAATGGGTGATCGGTGATGCtgtgatcatcatcatcatccctcTCCTTTTCTGACTTATTTCTTGGCGGCCAGTGTGCGAAAGTCTCTGCTTCTCCTGCCCAGTCTTCATCCCCCCATTAATCCCCGTTCCTGCACCCCGACTGGGTCTCAATGAGAGTGGGGTCCCTGGCTGGAGTCCATAGATGTAAATGAAAATCATGACACCCATCTAACCCATGTGTATTTGACTGTAGAAGGTATTTCTCCCTTTATGTGTTTAGTTCATATGTGTTTTGTacttattctttttattattaatgtttttaaaattgctgGTACTACAGATGTTTAATGTTAGTGATCTGAAGGATGATCTGTTCTCAATACTACGCTGTTTGATTTGGAGCTTTGGTGAGGTAAGAGggtataatatgatataaaatcaagctccagggtccctggttcaaacCTGAGCTCGGGTTGATGTCTCTgttgagttttgcatgttctccacatcTCCATGTGagttcctccaggttctccagtttcctcccaattCCCAAAAACAGgagctggtaggtggattggctatgctacaTTCCCcctaggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgagctgtgatggactggtgcccCATCCAGAGTCTATTTCCGAATCATGCCCACTGTTACTCGggctccaccatgaccctgaccaggataaagcagttactgaatgaatgaatgaatgaatgaataaaagtcTAAGGACTAAGATCTAGGACTATGGACTAAGGCTGTGCTGCCTTGTAATACACTAAACACAGCAATTTCCTTCTACCAAAAGTCAACAACAGTTGTGACATTGAAAATGATGACAGTCTTTATCTAAAATGTGGTGTTGAGAACAGATTAACAAACCAAAGAGCCATGAGTCGAATGCTTATTCTAGGTAAACTCTTCACTCTGGCGCCACCCCTGAAACCTAGCTAAATGTTCTCAGACCTCACCGATATCATCAGCAGTGCAGTAGGATGGATCGTGTTCGTCATCAGTACAGTCGATGTTATCCTTGTGGCCTGTGACTCGGTGTTGTTCGTTTGGTTGATTGATCAGATTTGTTTCCTAGTTTATTAGCTTTTTGTTAGCGTTAGCTCCTAGTCGTGCAGTCAGTCACTGTGTTTaggtgtggtgtggtggtggATGGTGAGAAAGGAGGCTCAGCCGGGGATGTGACTCCATACCCTCCCGGCGTCACATGACCCCTTATATGCCGACCCAGTTTTCCTCTTTACGACACCAGCGGCATCCACGGACTTGCGTAGCAGCTGGAACACTCTGTATCTGTCATGAATACATTGATTTACTGTTTGCACTTCAGAATGCAGAATGGAGTGTGAAATGCAGACAGATTGGGCGAGAATGGGATCTGTCAAATTGGGAAGTGTTTCTTAGTAAATTTAACAGTATTGAAGAAAAGGTGAGATGTTTTTAGCATGCTGCAGTTGCTCTTCTGATGCGAAGTGATGTTTAAGTAATGAGAAATTAAAATACCATGtataatcacatttatttaacttctAATATCATATGGTCAGGTATGAACTTGTTCAGTAACTACAAACTTAACTACAAAGCATTTGGtctgtttaaaaatatagattCTTAGGGCAGGAGAAAAGTGTGACATTTCTGATGGAACAATTTCTTCCTGGCAGTGTTTGACAGTTTTCAGATCTCATCAAATACATTCAGTGGAGCTGCTCCACTTCTGTCACTGCCTCTGTTCTGCCCCTGTGCTGAGTGCATCAGCTGTATGgatgatagacagacagatacactcatttttctctctgtctctgaggaCTGAAGCTCTGACACCTGCCTCCCAGACACACTTTGCAGCAATAGCATAAAAAATGGATGGAGGAGcttaaaatatttcatcacTTGGGTGGAAATCAGATTAAAGTTGCTTATGAGGAGTAGctattaagttaaaataattactaatattATGTAAGTGGTAAAAGAGTACTCTTTTAAGTATAACCTGATGTTATACTTTTTAgttgtgcattttaatcattttctgcATAAGCTTACACACGAAATGCCCAACTTTGACCCGTATGAGTGCACAGACTTGATACTTCAAATATTATTATACCAGATTGTGCCGGAGTAGTTATTTGTACTCAATATCATTTCATGTTATAGATTTGCAGTAGAAACCAGACATTTTCCTCATGCTGATAGTTGTGTCTCATTTACGCAATGAgcagaataatatttttttctctgagctTCAGAAAGTAGGTCTAATGCTCCCTCGCCCCCTCAACAGTCTGCTCTTGTCTGAACTTTCCTTCCCGCATACACAGGCAACAGGAGACCCCTCATTTTCAGatacccacatgcacacaccttcATGTCCCTTTTTGCCCATGCAAAGAAAGATGTGTGTCTAGTTAATGCAATGACATCATCACAATACCTTGATGAAAGCTAATAACATCACTTAAACATGTAGGCCTTTAATTTTAATCTAGAAACatgaatgaaacatttaaattattcaCTGAAACGAACCTATTTTTGGGGAGACAGTGCTAATTTTACAGTGACATTTTGACTAATGCTGTTAGGATATACTTCTATTCatcattttttgcttttttcaccAGTATGTGTCTGGGTGGTGGATGTCAGTTCAGTTTTTAAAGGGACTCATTTTACATTAAAGAGTATCAAAACATAGTatttagatttctttttttctttctttctttttgagcCTGACAAGTAATCATCTCATAAaaggctgcgtcccaaaccgtATACAAACAAACTAAATTGCAGGCTATGTCAAAATTCTAGCTGTGACAACTACAATACTGTAGTTACAATAATGCTGTGGCTTTGGCTACTATTTTGactagtttattatttaatgatgtATACAGATAGGACATAGCCAAAGTTACAGACCATACAAATTAATAACAGGCTTATAAGATATTAAAAATGTGACTCTGCTGCCATCTGCAGGCGACTACATGTAATAGCATGAATGATATTTTCCccttattatactgtatatgtgaattTACATAAAGCTTATTACCTGCCATATGCTCTAGACTATTTGACACAGAGCAAATTGTGACTGTTagcttcaaaaataaaataaaaaatattcaaataataataataacactgataTAGTTATGTTTAGTAGAAGGTTTAACTCATTTGGGTTGAATTTTGCGAAAGTGTAACGAAAGtttaaatttagaaatatttttgatttttttttttttttgcaaacaatAAAGACAGTTGTAATATCTATTCATAACTGTGAAAGACTGACTGGAATTAGAATAGGCCATATGATCAATATTTAAAGTGCCATGGGTTTTGGTGACATACTTCTTGTTAATGATTTGTATTTACGACCAATAAATCTTGTTAAGAGATTAGGAATTATACTGTTGAAAAATTTCTCTCTTGTGAACTAGCGGATCTGTGTGATCTATGCATGCCTCTCCTTAAAAACTTGCCAAACACACTTGTTCTTGTGTAAATCTCTTTTCATGTCTTTAAAGCATACTGCGGGgttggatgaaaaaaaaaaaacattatccaGGATATTAATCCTTATGAATAAGAGCCATATATGTGTGCACGGTTTCCTGCTGGTGTGatctgctttaattaaaaaagtactgACTGATTTTCAGAACTAGGCCTATTATTTGTATACATCTTTTCTCTTCCAGGGACCAACATGTTTGCtgttagtttctttttttcttactttgtcTTGCTTTAAGCATTTATACTATGTTTCTATGCTGACACACAAATCCATTGGAGactggaggttttttttatacatgtcCTTGCAGAGGTTTATAATATCTTGCTTTCTGgtctctgatttttttcactcagtcctactgattaaaaaaaa

Function

GO: NA

KEGG:

id description
K23533 LINGO, LRRN6; leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925767.2 True 7847 mRNA 0.42 3 15412738 15460090

Neighbor

gene id symbol gene type direction distance location
sf3a2 sf3a2 coding upstream 74760 15332702 ~ 15337978 (+)
tpgs1 tpgs1 coding upstream 86680 15321461 ~ 15326058 (+)
LOC113533560 isyna1,LOC107671814,LOC107549817,LOC107696502 coding upstream 91754 15313865 ~ 15320984 (+)
si:dkeyp-68b7.5 LOC108280921 coding upstream 115202 15292775 ~ 15297536 (+)
si:dkeyp-68b7.12 arhgap30 coding upstream 120114 15281241 ~ 15292624 (+)
pias4b LOC108280250 coding downstream 43543 15503633 ~ 15511913 (+)
map2k2b mp2k2,map2k2b,LOC108427153,LOC105905870 coding downstream 54322 15514412 ~ 15521221 (+)
tcf3a LOC100304646 coding downstream 74832 15534922 ~ 15563785 (+)
mbd3a mbd3,LOC108427158,LOC105938962,LOC107713415,LOC107393299,LOC101480296,LOC106515020 coding downstream 111874 15571964 ~ 15578078 (+)
LOC113533252 mex3d,mex3b,LOC107736985 coding downstream 119931 15580021 ~ 15586283 (+)
G320848 NA non-coding upstream 71531 15340566 ~ 15341207 (+)
G320843 NA non-coding upstream 101929 15310604 ~ 15310809 (+)
G320797 LOC108280451 non-coding upstream 186666 15223871 ~ 15226072 (+)
G320386 NA non-coding upstream 741069 14613999 ~ 14671669 (+)
G320371 NA non-coding upstream 852125 14549223 ~ 14560613 (+)
G320935 NA non-coding downstream 1764 15461854 ~ 15463232 (+)
G320949 NA non-coding downstream 83807 15543897 ~ 15546092 (+)
G320977 NA non-coding downstream 110604 15570694 ~ 15571089 (+)
G320981 NA non-coding downstream 135934 15596024 ~ 15596226 (+)
G320988 NA non-coding downstream 153104 15613194 ~ 15613541 (+)
si:dkeyp-68b7.7 LOC108280928 other upstream 109450 15299061 ~ 15303288 (+)
fcer1gl LOC100304589 other upstream 159183 15249515 ~ 15253555 (+)
LOC113533365 LOC108280254 other upstream 311277 15082238 ~ 15101461 (+)
LOC113533366 NA other upstream 346367 15063721 ~ 15066371 (+)
ly97.3 LOC108280687 other upstream 583960 14827242 ~ 14828778 (+)
LOC113533167 NA other downstream 106464 15566554 ~ 15570478 (+)
slc25a42 slc25a42,LOC107696381 other downstream 165712 15625802 ~ 15682276 (+)
G321088 NA other downstream 408926 15869016 ~ 15870995 (+)
gpx4b gpx4b,gpx4,LOC107552704,LOC107723219,LOC103364371,LOC102207447 other downstream 469857 15929947 ~ 15936773 (+)
jund jund,LOC108280549 other downstream 640443 16100533 ~ 16111089 (+)

Expression


Co-expression Network