cib3 (cib3,LOC107687907)


Basic Information

Item Value
gene id cib3
gene name cib3,LOC107687907
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16385427 ~ 16392280 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925803.2
ATGGGGAACAAGCAGACCATTTTCACTCCACAGCAACTGGACGCGTATCAGGACTGTACGTTCTTCACCAGAAAAGAAATTCTaagGCTCTTTCATAGGTATCGCGATTTGGCCCCACAGCTCGTCCCGCTCGACTACACCACCCAGCCAGATGTGCGCCTGCCCTATGAGCTGATTGGCAGCATGCCAGAGCTGAAGGATAACCCGTTCAGGCAGAGAATCGCAGAAGTCTTTTCAGAGGACGGAGAAGGAAACATGACTCTAGATGATTTCTTGGATATGTTCTCAGTGCTGAGCGAAATGGCACCAAAGGATCTAAAGGCCTACTATGCATTCAAAATCTATGACTTTAACAACGACGACTTCATTTGCAAATCAGACCTGGAGCAGACCTTGAACAAGCTTACGCGGAATGAGCTGACCGAGGATGAAGTGAGGATGGTGTGTGAAAAAGTCCTTGACGAAGCTGATATGGACAACGATGGCCGTCTGTCACTGGAGGATTTCCAGCACATGATCGTGAGAGCACCAGACTTCCTCAGCACATTCCATATCAGAATATAAGACAAGTCTTTGAGGACCAAATGGATTAAAGGACAAAGCTCTTCTTTGAACAAACGGAATGTAGACACCACAGGAAATCGAAGATGAGAAGGAGGAAATACACCACCTGGCCTTGGAAAAGTTTACAGCACCCTTCTTCTGAGAACAATGAATCAACAGTGAAATGCATCAAACCAAGATGTTGCACTTCCTCGATCTACACTTCGTGTTTTAGtttccctattttttttatttcaatacaACTTTTGTTTAATGAAAATAAGTATTGTTTCTGAGAACTGAGGATTCAACAGACGCCCTTT

Function

symbol description
cib3 Predicted to enable calcium ion binding activity. Orthologous to human CIB3 (calcium and integrin binding family member 3).

NR:

description
calcium and integrin-binding family member 3 isoform X2

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23838 CIB3; calcium and integrin-binding protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925803.2 True 866 mRNA 0.44 6 16385427 16392280

Neighbor

gene id symbol gene type direction distance location
LOC113533484 LOC108280930,LOC108427189 coding downstream 42590 16336003 ~ 16342837 (-)
ap1m1 ap1m1,LOC107696211 coding downstream 58470 16308558 ~ 16326957 (-)
klf2b LOC108280879 coding downstream 155128 16227671 ~ 16230299 (-)
atcayb atcay,LOC108280696,LOC108427182,LOC105906996,LOC105906923 coding downstream 225210 16147863 ~ 16160217 (-)
nmrk2 LOC108280697,LOC108427183,LOC107750947,LOC103029326,LOC107552712,LOC107696854,LOC107687917,LOC107723974 coding downstream 242064 16140764 ~ 16143363 (-)
cirbpa cirbpa,LOC108280649,LOC107655466,LOC107574409,LOC107729620,LOC107665639,LOC107712399 coding upstream 77819 16470099 ~ 16473688 (-)
LOC113533290 midn,LOC108271022 coding upstream 117281 16509561 ~ 16526583 (-)
LOC113533174 LOC108280837 coding upstream 201864 16594144 ~ 16601594 (-)
LOC113533630 pnp5a,LOC108280898,LOC108427136,LOC107692836,LOC107747996,LOC107569603,LOC107728028,LOC108440276,LOC107703870 coding upstream 213118 16605398 ~ 16610978 (-)
LOC113533663 NA coding upstream 227353 16619633 ~ 16619734 (-)
G321465 NA non-coding downstream 10084 16374510 ~ 16375343 (-)
G321354 calr3b,LOC107750920,LOC107696693,LOC108280796,LOC107552714 non-coding downstream 162113 16187976 ~ 16223314 (-)
G321349 NA non-coding downstream 286189 16098868 ~ 16099238 (-)
G321347 NA non-coding downstream 335784 16049442 ~ 16049643 (-)
G321330 NA non-coding downstream 343686 16040881 ~ 16041741 (-)
G321468 NA non-coding upstream 1928 16394208 ~ 16456123 (-)
LOC117595731 NA non-coding upstream 2473 16394753 ~ 16395539 (-)
G321470 NA non-coding upstream 7020 16399300 ~ 16401527 (-)
G321505 NA non-coding upstream 126108 16518388 ~ 16520370 (-)
LOC113533305 NA non-coding upstream 153959 16546239 ~ 16547501 (-)
G321462 NA other downstream 18423 16357574 ~ 16367004 (-)
LOC113533563 NA other downstream 661071 15687082 ~ 15724356 (-)
LOC113533479 LOC108280451 other downstream 1153847 15222778 ~ 15231580 (-)
theg NA other downstream 1639940 14731734 ~ 14745487 (-)
LOC113533556 LOC108280202 other downstream 2705317 13665181 ~ 13680110 (-)
stk11 stk11 other upstream 172428 16564708 ~ 16587816 (-)
trnal-uaa_3 NA other upstream 581247 16973527 ~ 16973770 (-)
G322080 NA other upstream 1107785 17500065 ~ 17500832 (-)
LOC113546399 LOC108280496,LOC108430154 other upstream 1461567 17853847 ~ 17872108 (-)
G322538 NA other upstream 2001969 18394249 ~ 18394823 (-)

Expression


Co-expression Network