LOC113533584 (LOC108280423,LOC108280624)


Basic Information

Item Value
gene id LOC113533584
gene name LOC108280423,LOC108280624
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 12820071 ~ 12832529 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925813.2
TGTTTCTCCTTTGACAAGCAAATGAAGACTCTCTTTTCAGTCCTCCAATCTGTACCATCTCTAATGGAGGTTAAGTTACACTTGAGAAGCTTACCTGAGAATTGGGCagctgaagtgatttatttccTCCAGGCTTGTTCTAGTCTACCATTTTTTGAATTGAGAGTGGGCAGTGGAGGTGAAACTCTAGGAATGATCAGAGGAGTAGCTTTGAGGTCTTCTGACAAAAACTCCATATTGTCTTTTGGGTGCCGTCATTTGGATTATCATGACTACCATGGCTGGATATCAGCAACAGGTTATATCACAGATGATGTGCACAGAGTGCTGCCCTGTATCACCCTCACCATAACAAACCACACAGATTTCTACAATGATTCTTGGACAACATTCTTCCATCATTATAACCAGCTTAAAACAATGACTGAGCTTTATCCAGAGTATGATCAGAGCATGGATGAACTGTTATCTGTCATGAACACTATTCCTGGTCTGAAAGAGGTAGAGCTGGCATTCACATTTTTGACAGTTCATGGTGCTTCCAGCATTCTACACCTTATTCAGACCTCGTCCAGTCTGTGTAAGATTGATGTTATTCTGGCAAGGCAAAGAAGGAGAGATCTTGCTGAGGAACAGAATGTCAGGGAAGACTGGAAAAGTTTCCAGGGTGACTATGAAGGGGACAGTGTCGATTCAGACATCAGTGactcaaacagatcagcaaAATTCAGTTCTGGGAGCTATGACACAGATGTGGAGGACTATGGGGACACTGTCTACTTACCAAGACAGCTCAGTTCGGATTCAGAAATAGAAAACTATGACCTGGATCTCTGCTCAGAGCTAAGAATAAGGAAAAACACCAGGAATGAATGCAAGTTGTCCTTGAGATGTAATGGCTCCAATCCTGATACAAAAGCAGTCTTTGCGTACATTTCACTCATTGTATCTGAATATTCAGGGGAGCCTGAAATCAACTGGAGAAGCTTCTTTCAGTCTTACTATGAGACTAAAGGGTTAATTGAGAGAAACCCGTACTTTGCTGAGAAAACAAATGCCTTGCTGTCTTTCCTGCACATCGTACCTGGACTGGAGGAGGTGGAATTTGGCATACATAGTCTAACTGAGAGCTGGGCTCCTAGGatcctctttctctgtcatgCAAACCCCAATATTCATAGTATCCGTCTGCTGTTGGAAAATGATAAACAAATTGAAAAGTACAGTGCCTGCTCATCTTTAACCATTAAAAGAAACTTCACAGACTCCAcggtTACTGTGAAAATCCATGTGCTAAGCAACACCACTATACTATCCCTCATTTACCTCAAGTTACCATGTTCTGAGATCAGCAACCTTGATGGAGCTGGTCTTCTTTACAGACTGAGGTGCCTTGAGGGTTTAAATGACATTAGATCTCAGGAGTACAATGTGCAAATAAATGAGCTAATCTCATTCCTCCACTCTGTTCCTCATCTTCAGAAATTGAAATTTCAGATTGAGAACCTAACTACAACCTGGGCTACAAGGGTTCTTTCCTTTAAAACCTGCCAGAGTCTTACAAAGATCTTtgtgatAACCTCATCATATGACATGTTAATGGAGGAGGCAATCtcagaacttaaaaaaaattggacatGTCAGGACTGTGTTCTGGTTATTACAGGACTGAGATGCAGTAACCCCACTGATAAATGTTCAAAGCAAAACTGGCTACAAGAATGCAACAAAAATGTGAAGCTCTCATTCTGTGGAGGCCATTACTCAGAGGAGCCCATAATGTATGGgcagtgtgagacagacagtgagagagacgaGAATAAATATTACAGGTTTGAGTGCTATTCTGATGTAGCAGAGGAAGATGAATATGAAGAGGAAGATGGAGATGAGTTCATAGATTGAACGGTATATGcttttatgaaaaataacaaattagaGATCAAAATTAACATCTGGATGAATAATAGCCATTTTAATGCAAACTGCAGGCCAAATGGAAAAGTAATGTTATGta
>XM_034314883.1
TGTTTCTCCTTTGACAAGCAAATGAAGACTCTCTTTTCAGTCCTCCAATCTGTACCATCTCTAATGGAGGTTAAGTTACACTTGAGAAGCTTACCTGAGAATTGGGCagctgaagtgatttatttccTCCAGGCTTGTTCTAGTCTACCATTTTTTGAATTGAGAGTGGGCAGTGGAGGTGAAACTCTAGGAATGATCAGAGGAGTAGCTTTGAGGTCTTCTGACAAAAACTCCATATTGTCTTTTGGGTGCCGTCATTTGGATTATCATGACTACCATGGCTGGATATCAGCAACAGGTTATATCACAGATGATGTGCACAGAGTGCTGCCCTGTATCACCCTCACCATAACAAACCACACAGATTTCTACAATGATTCTTGGACAACATTCTTCCATCATTATAACCAGCTTAAAACAATGACTGAGCTTTATCCAGAGTATGATCAGAGCATGGATGAACTGTTATCTGTCATGAACACTATTCCTGGTCTGAAAGAGGTAGAGCTGGCATTCACATTTTTGACAGTTCATGGTGCTTCCAGCATTCTACACCTTATTCAGACCTCGTCCAGTCTGTGTAAGATTGATGTTATTCTGGCAAGGCAAAGAAGGAGAGATCTTGCTGAGGAACAGAATGTCAGGGAAGACTGGAAAAGTTTCCAGGGTGACTATGAAGGGGACAGTGTCGATTCAGACATCAGTGactcaaacagatcagcaaAATTCAGTTCTGGGAGCTATGACACAGATGTGGAGGACTATGGGGACACTGTCTACTTACCAAGACAGCTCAGTTCGGATTCAGAAATAGAAAACTATGACCTGGATCTCTGCTCAGAGCTAAGAATAAGGAAAAACACCAGGAATGAATGCAAGTTGTCCTTGAGATGTAATGGCTCCAATCCTGATACAAAAGCAGTCTTTGCGTACATTTCACTCATTGTATCTGAATATTCAGGGGAGCCTGAAATCAACTGGAGAAGCTTCTTTCAGTCTTACTATGAGACTAAAGGGTTAATTGAGAGAAACCCGTACTTTGCTGAGAAAACAAATGCCTTGCTGTCTTTCCTGCACATCGTACCTGGACTGGAGGAGGTGGAATTTGGCATACATAGTCTAACTGAGAGCTGGGCTCCTAGGatcctctttctctgtcatgCAAACCCCAATATTCATAGTATCCGTCTGCTGTTGGAAAATGATAAACAAATTGAAAAGTACAGTGCCTGCTCATCTTTAACCATTAAAAGAAACTTCACAGACTCCAcggtTACTGTGAAAATCCATGTGCTAAGCAACACCACTATACTATCCCTCATTTACCTCAAGTTACCATGTTCTGAGATCAGCAACCTTGATGGAGCTGGTCTTCTTTACAGACTGAGGTGCCTTGAGGGTTTAAATGACATTAGATCTCAGGAGTACAATGTGCAAATAAATGAGCTAATCTCATTCCTCCACTCTGTTCCTCATCTTCAGAAATTGAAATTTCAGATTGAGAACCTAACTACAACCTGGGCTACAAGGGTTCTTTCCTTTAAAACCTGCCAGAGTCTTACAAAGATCTTtgtgatAACCTCATCATATGACATGTTAATGGAGGAGGCAATCtcagaacttaaaaaaaattggacatGTCAGGACTGTGTTCTGGTTATTACAGGACTGAGATGCAGTAACCCCACTGATAAATGTTCAAAGCAAAACTGGCTACAAGAATGCAACAAAAATGTGAAGCTCTCATTCTGTGGAGGCCATTACTCAGAGGAGCCCATAATGTATGGgcagtgtgagacagacagtgagagagacgaGAATAAATATTACAGGTTTGAGTGCTATTCTGATGTAGCAGAGGAAGATGAATATGAAGAGGAAGATGGAGATGAGTTCATAGATTGAACGtggtggaattctctgactgtaggagg
>XM_034314884.1
GATGATGTGCACAGAGTGCTGCCCTGTATCACCCTCACCATAACAAACCACACAGATTTCTACAATGATTCTTGGACAACATTCTTCCATCATTATAACCAGCTTAAAACAATGACTGAGCTTTATCCAGAGTATGATCAGAGCATGGATGAACTGTTATCTGTCATGAACACTATTCCTGGTCTGAAAGAGGTAGAGCTGGCATTCACATTTTTGACAGTTCATGGTGCTTCCAGCATTCTACACCTTATTCAGACCTCGTCCAGTCTGTGTAAGATTGACTAGTGTTATTCTGGCAAGGCAAAGAAGGAGAGATCTTGCTGAGGAACAGAATGTCAGGGAAGACTGGAAAAGTTTCCAGGGTGACTATGAAGGGGACAGTGTCGATTCAGACATCAGTGactcaaacagatcagcaaAATTCAGTTCTGGGAGCTATGACACAGATGTGGAGGACTATGGGGACACTGTCTACTTACCAAGACAGCTCAGTTCGGATTCAGAAATAGAAAACTATGACCTGGATCTCTGCTCAGAGCTAAGAATAAGGAAAAACACCAGGAATGAATGCAAGTTGTCCTTGAGATGTAATGGCTCCAATCCTGATACAAAAGCAGTCTTTGCGTACATTTCACTCATTGTATCTGAATATTCAGGGGAGCCTGAAATCAACTGGAGAAGCTTCTTTCAGTCTTACTATGAGACTAAAGGGTTAATTGAGAGAAACCCGTACTTTGCTGAGAAAACAAATGCCTTGCTGTCTTTCCTGCACATCGTACCTGGACTGGAGGAGGTGGAATTTGGCATACATAGTCTAACTGAGAGCTGGGCTCCTAGGatcctctttctctgtcatgCAAACCCCAATATTCATAGTATCCGTCTGCTGTTGGAAAATGATAAACAAATTGAAAAGTACAGTGCCTGCTCATCTTTAACCATTAAAAGAAACTTCACAGACTCCAcggtTACTGTGAAAATCCATGTGCTAAGCAACACCACTATACTATCCCTCATTTACCTCAAGTTACCATGTTCTGAGATCAGCAACCTTGATGGAGCTGGTCTTCTTTACAGACTGAGGTGCCTTGAGGGTTTAAATGACATTAGATCTCAGGAGTACAATGTGCAAATAAATGAGCTAATCTCATTCCTCCACTCTGTTCCTCATCTTCAGAAATTGAAATTTCAGATTGAGAACCTAACTACAACCTGGGCTACAAGGGTTCTTTCCTTTAAAACCTGCCAGAGTCTTACAAAGATCTTtgtgatAACCTCATCATATGACATGTTAATGGAGGAGGCAATCtcagaacttaaaaaaaattggacatGTCAGGACTGTGTTCTGGTTATTACAGGACTGAGATGCAGTAACCCCACTGATAAATGTTCAAAGCAAAACTGGCTACAAGAATGCAACAAAAATGTGAAGCTCTCATTCTGTGGAGGCCATTACTCAGAGGAGCCCATAATGTATGGgcagtgtgagacagacagtgagagagacgaGAATAAATATTACAGGTTTGAGTGCTATTCTGATGTAGCAGAGGAAGATGAATATGAAGAGGAAGATGGAGATGAGTTCATAGATTGAACGGTATATGcttttatgaaaaataacaaattagaGATCAAAATTAACATCTGGATGAATAATAGCCATTTTAATGCAAACTGCAGGCCAAATGGAAAAGTAATGTTATGta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925813.2 True 2017 mRNA 0.41 16 12821227 12832529
XM_034314883.1 False 1934 mRNA 0.42 17 12820071 12832529
XM_034314884.1 False 1712 mRNA 0.41 13 12821227 12831523

Neighbor

gene id symbol gene type direction distance location
LOC117595732 NA coding downstream 62927 12756704 ~ 12757144 (-)
LOC113533469 NA coding downstream 65819 12752650 ~ 12754252 (-)
LOC117595730 NA coding downstream 93577 12724934 ~ 12726494 (-)
gpc5c LOC108280917 coding downstream 97307 12635057 ~ 12722764 (-)
gpc1b LOC108280809 coding downstream 297054 12436703 ~ 12523017 (-)
LOC113533473 LOC108280623,LOC108280423 coding upstream 2145 12834674 ~ 12840013 (-)
svilb LOC108280625 coding upstream 11551 12844080 ~ 12905436 (-)
kcnj9 kcnj9,LOC108280861,LOC108433105,LOC107698496,LOC107713649,LOC107600231,LOC107757805,LOC107599257 coding upstream 107999 12940528 ~ 12964781 (-)
cdc34b ub2r1,cdc34b,LOC108280790,LOC108433104,LOC105020474 coding upstream 153733 12986262 ~ 12999987 (-)
LOC113533516 NA coding upstream 329007 13161536 ~ 13165217 (-)
G319186 NA non-coding downstream 23137 12772649 ~ 12796934 (-)
G319178 NA non-coding downstream 40845 12754768 ~ 12779226 (-)
G319182 NA non-coding downstream 54080 12764254 ~ 12765991 (-)
G319163 NA non-coding downstream 171185 12633893 ~ 12648886 (-)
G319059 NA non-coding downstream 235982 12583865 ~ 12584089 (-)
G319467 NA non-coding upstream 156772 12989301 ~ 13021880 (-)
G319474 NA non-coding upstream 196580 13029109 ~ 13029704 (-)
G319496 NA non-coding upstream 236770 13069299 ~ 13069522 (-)
G319544 si:ch211-168n16.1,LOC108433102,LOC108280795,LOC107713651,LOC107600229,LOC107757803,LOC107662975 non-coding upstream 286259 13118788 ~ 13119111 (-)
G319557 NA non-coding upstream 303075 13135604 ~ 13135860 (-)
wu:fb63a08 LOC108280878 other downstream 1114194 11619876 ~ 11705877 (-)
ccl20a.3 LOC108261059 other downstream 2291792 10527282 ~ 10528279 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other downstream 3846796 8969204 ~ 8973275 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other downstream 3865961 8903824 ~ 8954110 (-)
G317176 NA other downstream 3934362 8883649 ~ 8885709 (-)
LOC113533649 LOC108280860,LOC108433106 other upstream 75924 12908453 ~ 12928071 (-)
ccl25a NA other upstream 779987 13612516 ~ 13615743 (-)
LOC113533556 LOC108280202 other upstream 832652 13665181 ~ 13680110 (-)
theg NA other upstream 1899205 14731734 ~ 14745487 (-)
LOC113533479 LOC108280451 other upstream 2390249 15222778 ~ 15231580 (-)

Expression


Co-expression Network