acsm3 (acsm3,LOC108428295,LOC107749205,LOC107682913,LOC107735424)


Basic Information

Item Value
gene id acsm3
gene name acsm3,LOC108428295,LOC107749205,LOC107682913,LOC107735424
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10861959 ~ 10878656 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925863.2
TCAACCCCCTCAGAACAACAGGTAAGACTTAATATCGCGAGAAAGTTTATTACAAGGAAGTGAGCTCCCCGCTGACATGTTTCCGTACAGACGGAGTAGTTCGGTGCTGTTGTAAAGACTTTGTGATGAATTGAGAAGGCAGTGGAGGAGAGGGAGACCACGCCCTCCTGGTGCTGCTTCTCTCCCAGCTGTTAGTGTTTATAAAGCCCGTGTGAACATTAGCGTCAGAAACAATGCTCCTGCTCGCTGTTCGTTGGCGTGGATTATTAACTCATGTGTTAAAGCCGGAGAGAAGAACACAAtggctccacacacacacatccaaaacAACAAGCCCGAAAAACTTCACCGACTACAGCAGTCTGATGCGCTTACCCAAACCCGCCATTCCTCCTCTCTTCAACTTCGCTAAACATGTGCTGGACGTGTGGGAATCCACAGAAAAGGCAGGTGCTAAGTCATCTTGGCCTGCTCTGTGGTGGGTTAATGATAGAGATGAAGAGATCAGATGGAGTTTTGAGGAGCTGGGCTTCTACTCTAGACAACTAGCTAATGTTTTGATTGATGAATGCCGTTTGGTAAGAGGAGATCGAGTCCTTCTCATCCTGCCAAGAGTTCCAGAGTGGTGGCTGGTCAATATTGCCTGCCTCAGAACAGGTACAGTTCTGATCCCTGGAACATCCCAGCTTACAGCCAGAGACGTCCTGCATCGTTTGCAGGTCTCCCAAGCAAAGTGTCTGATCACAGATGAGAGTATGGCACCACTGATGGAGGCTGTGATTCCACAATGTCCCGCACTGACCTCTAAGCTTCTGCTTTCCAACAAAGAGCGACCAGGATGGGGCAACCTTGCAGCAGTAATGGGGAGTGCTTCTGCTGAACACGTGTGCGTGGACACGAGGAGTGACGAACCTATGACCATCTTCTTCACCAGTGGAACCACTGGGTCTCCCAAAATGACAGTTCACAGCCACTGTAGCTATGGCCTAGGGCTCACCTTCAATGgcagGTACTGGTTAGATCTTACTGATGGTGATGTGTTTTGGAACACCTCAGATACAGGCTGGGCTAAATCTGCATGGAGCAGTGTATTTGCTCCCTGGACTCAGGGAGCGTGTGTGTTCGTACACCATATGCCACGCTTCGACACCAGCACTGTCCTCAAGACTCTCTGCAGGTATCCCATCAGCACTTTCTGCAGTGCTCCAACAGCTTATCGGATGTTAGTACAGGAGGATCCATCCAGgttcCAGTTTCAGGCTCTGGAGCACTGCCTGTGTGCAGGAGAGCCCCTTAACCCTGAGGTGATGAGTAAATGGAAGGAGCTCACAGGCCTTGATATCTACGAGGGATATGGGCAGACTGAGACTGTTTTGATTGCTGGCACATTCAAAGGTATGGAAATTAGACCCGGTTCTTTTGGGAAAGCATCACCAGCTTATGATGTGCAGGTTATAAATGAAGAAGGAAATATTGTTGCTCGGGGAACAGAAGGAAATCTGGCTATCAGAGTGAAACCAGATagacctttctctctcttcacagaGTACATGGGAGAGCCAGAGAAAACAGCAGAATGTTTCCGTGGCGATTTCTACCTCACAGGTGACAGAGGGATAATGGACCAGGACGGATATCTGTGGTTCGTTGGCagagctgatgatgtcatactGTCTGCAGGATATCGTATTGGCCCATTTGAGGTGGAGAATGCTTTAATAGAACATGAGGCTGTGGCTGAGTCAGCTGTGGTCAGCAGTCCTGACCCAGTCAGAGGAGAGGTAGTGAAGGCATTTGTTGTGCTTACTTCAGAATATAAACACAGAGACCAAAATGAGCTAATCAGACAACTGCAGACACATGTGAAGAAGGTCACAGCTCCATATAAATACCCCCGCAAGATTGAGTTTGTGGACCAGCTTCCCAAGACAGTGAGTGGTAAAATCCGGAGAGTGGAACTGAGGAAGAAGGAATGGGGACTGCCATGACTACCATACGCTACTGCTGTGATTGGATACCAGTGATGACTCaacatcattttaaacataCTGTTACACATACTGTCATTTATTATAGGGCCATAATGAACATAAATAAGTTAGAATTCCACTTTAGATGATGTAGTGATCTAAGAATTAAGGTCAATTGTCATCTGGCCTGGTATCAACCTGGTATCTGAATTTCCTCACAAGGTATTTCAAGCATAAGGACAACTTATAAATTCAGTCAGgtatgaatattttaatcaaagtcAGTTTTTATCTGATTAAATAAGGTAGGTGTGCTTATACACTccaataaagaaatatttcagcattttcaaCCTAA

Function

symbol description
acsm3 Predicted to enable fatty acid ligase activity and fatty-acyl-CoA synthase activity. Predicted to be involved in acyl-CoA metabolic process and fatty acid biosynthetic process. Predicted to be active in mitochondrial matrix. Human ortholog(s) of this gene implicated in IgA glomerulonephritis. Orthologous to several human genes including ACSM3 (acyl-CoA synthetase medium chain family member 3).

NR:

description
acyl-coenzyme A synthetase ACSM3, mitochondrial-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01896 ACSM; medium-chain acyl-CoA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925863.2 True 2328 mRNA 0.46 13 10861959 10878656

Neighbor

gene id symbol gene type direction distance location
ncapd2 ncapd2,LOC107692903,LOC107659972,LOC107749205,LOC107557881 coding upstream 1663 10838755 ~ 10860296 (+)
mul1a LOC108280869 coding upstream 142810 10711708 ~ 10719149 (+)
vwa5b2 LOC108280745 coding upstream 157467 10655409 ~ 10704492 (+)
ccl20a.4 NA coding upstream 327508 10532984 ~ 10534451 (+)
kirrel1b kirrelb,LOC108280344,LOC108428281,LOC107749112,LOC107659821,LOC107557870,LOC107721762 coding upstream 514571 10291830 ~ 10347388 (+)
map6d1 LOC108280841 coding downstream 1585 10880241 ~ 10897751 (+)
LOC113533503 cul3,LOC108261246,LOC104924156,LOC100710156,LOC107099750,LOC108240497 coding downstream 309142 11187798 ~ 11221863 (+)
ap1s3b ap1s3b,LOC108280899,LOC108428267,LOC107738797,LOC107660160,LOC107679405,LOC107552497,LOC107567705 coding downstream 359583 11238239 ~ 11253682 (+)
LOC113533219 LOC108280465,LOC108280463,LOC108280461 coding downstream 429365 11308021 ~ 11315878 (+)
LOC113533220 LOC108280463,LOC108280465,LOC108280461,LOC108428334 coding downstream 445471 11324127 ~ 11342139 (+)
LOC113533661 NA non-coding upstream 14173 10847468 ~ 10847786 (+)
LOC113533665 NA non-coding upstream 15947 10845716 ~ 10846012 (+)
G318031 alg3,LOC107692886,LOC107730451,LOC107557882 non-coding upstream 154451 10706814 ~ 10707508 (+)
G318016 NA non-coding upstream 213766 10647921 ~ 10648193 (+)
G317967 NA non-coding upstream 279667 10582093 ~ 10582292 (+)
G318248 klhl24 non-coding downstream 81265 10959921 ~ 10987576 (+)
G318273 NA non-coding downstream 129292 11007948 ~ 11009146 (+)
G318331 NA non-coding downstream 228139 11106795 ~ 11169139 (+)
G318332 mbnl1,LOC108280526,LOC107567699,LOC107679403,LOC107745615 non-coding downstream 234297 11112953 ~ 11119827 (+)
G318426 NA non-coding downstream 524608 11403264 ~ 11404056 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other upstream 127871 10730346 ~ 10734088 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other upstream 293052 10563821 ~ 10568907 (+)
capn10 capn10 other upstream 298965 10536431 ~ 10562994 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other upstream 884043 9958993 ~ 9977916 (+)
G317390 NA other upstream 1446795 9412323 ~ 9415164 (+)
per2 LOC108280459,LOC108439864 other downstream 521228 11399884 ~ 11464769 (+)
G318439 NA other downstream 588643 11467299 ~ 11469499 (+)
G319170 NA other downstream 1886399 12765055 ~ 12803019 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other downstream 2142486 13021142 ~ 13154527 (+)
LOC113533270 mtcl1 other downstream 2958777 13837433 ~ 13897914 (+)

Expression


Co-expression Network