map6d1 (LOC108280841)


Basic Information

Item Value
gene id map6d1
gene name LOC108280841
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10880241 ~ 10897751 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925891.2
tcaatctgattgagcatctgtgagatgtgctggacaaacaagtctgatccatggaggccccaccttgcaataTAAACGCttaggatctgctgctaacgtcttggttaTAGGGTGGCAATAAAATGCTATGACACAAAATGCTACTAACACAATACAATTTCAGTGCATTTCGAAACCTTAGTCAAGGAATAAATCCATCTGGTCTGTTGGTGTATTTTCCATATAAACAAGGAAGTGTTGCCAAATTCTGAAgaatgttttgcttttgtttcttaACCAGCATGTTAGCTTTTCTAGAGGAATACAGTTGTTGACTTCTGATAGCCACAAACTTGTTGGGATGgcggcaggtggttttaatgttatggctgatctgtgtatgCTTTGAACTCAGGTATAAGTCTATAAGTCTATAATCTGTATACTGATTATAAATGATCTTTAGGTTAAATGTTTTTAAGCCAGAAAGTTTTTAATAAATCCCAAGGAATTCTCCATCCAGAAGCTAATTGTTAATTTAGGGCTGAACAATTGTTGACACGTGATTGTTGTGCATGAATgtccaggtgttcctaataaagtggctggcaAGTGTATACACCCCAGTGTAGTTAAGTGATTATTGTAGATGTTTCTAGCTTCTACAGTGTTGGCTCCCAggcctctctgtctgtgctgCAGAGGGGTGACTGCAGGAAGTGAGCCccagctttggaggacaggATACCTGTAGATCCACTGGTAGTCACAACCTGCTACCCGGACAGCTCCATGTAATCTACCTGTGGTCCAGCTTGCAGAAAGAAGGAACCTATGATCTGTACAGGAAAGGGAAAGATGGCAGTCTGACCGAGTCACAGCTCACCTTGTGACATTGTTGGAAGGTGTTGGCGTGCGTGCACGCGCGGTTCGGGAGTGAAATAGAGCTCACGTGATTATTTTAAGGGCGGTACATGATACCTGTGAGGCCACGCCCCTGGTTTTACCTCAGTGTCCTGTATGGTTCCTCTATTTATCAACTTTGTCACTTTGTCCAGTGTTTGCATTGTGTATAGTGGTTGTATTGCACTGTGCTCCTCACCATGTTGTTATTAATAGCTAATTAAACACTTGAGTAATCAGATCATGACAATGCCTCAGAGCTATGACCGCTGGGAAGTGATCTGATGTATGAGGAGCGGAGGGATGTCATGTTTTCCTTCTCATCCCGCAGAGGCGATGCGGGGAATGCGTGAAGTCCGCGCTGCTTTCCGGGGCCCTGTGTGGGATTTGTTATGGATTTTTGTGCGTCGACGGCAGATCAGGGAGCACGTGAAAGCAGCGTCAGGCGCATCACTATGGCGTGGCCGTGCATTAGCCGGGTGTGCTGTCTGGCGCAGTTCTGGAACCAGTTTGACAAATCGGACCTGTCCGTCCCACTGACCATCCAGAACTACTCGGAAATCGCAGATCAGGAGATCCGCTCGGTAACCGGAAACGTTCCCGCTGAGCGAGCGCAGCAGCGCGAGCGCGCCGCCCCGGAGCACAGAGACTCTTCCGCGGCGCAGGACGGCGGAGGCAACCGAGTGAGTCGCAGGCGCGCGGAGCCGAGTTACAAACCGCGCGAGGACGCGCCGTTCCCCAGCGTGACCCAGTACAAACAGGACTACAAACCATGGCCCATTCCCAAAAAAGACAACTTTCCATGGATTAGTAACGGCGTCGGGAAAAGCAGCCCGGTGAAGCAGCAGCAGCCGCGAGCAGGAGGAGAAGAGCGCGCGGGCAGACAGAGGCACGCGGACAGAGAAGCGGCTAAAACGAGCTCTTACAgAGAGGAGTACAGGCCCTGGGCAGGGGTGCAGCCATCCAAGCCCATTCAGAAAAGGCCTACATTCCTGAGTACAGCATCCAGCGAGCCTCCTCCTGAGACCAGCTACCAGGCTGCCTTCagtgctgacacacacagacatgcggACGTCAGTGTGCCAGATATGACCACACGCACACAGCCCAACATCACAGAGATGGCAGGCAGGCCTGAGGTCAGTTCCAGACCAGAGGAGCAGCTGGTGAAGACGAAGTTGTCTCCCAACCCGTCCGCTGTGTTCCAGAGTGGATCACGAATCTTCAACATATGACCCAGTGGACCAGTTAACCCAGAAAACAAATATGGACTTAGGATTTCACTTTGAGACAATGCACACACAGCTCACTGAGGTTTTAGGGAACGTTTCAAAAGCTGCAGTAACAACCTTTAACAGGCTGAATCGGCAATGCTGCTGAAGGTTTAAGCGATAATCTGAAAATGACAGATGGTGTAATAAAATACCCAAGGCTATTTGTCCAAACCATTCCATAGTGCTGCATGGGTAGAAATGATGGAGGAATGTAGGGCTAATTCCACTTGGTATGAAATCTATGCAAGAGAATGAATTTCTGAAATTAATGTCTGTCTCATGCAAGTCTCTTATATTTTGATATACAGTGGCATCCTTATATattattggcatccttcatgaaaatgaatgaaaaaaattactgtataaaaacaataacacctGCAATAAATGAGTTTGAGCTTAAGCATACAGGCacattgtatagttttatttaaactctTTTTTCTAACAATAGTTTTAAGtagtgtaatttatttttttctacaaaagtGGTTTTAAATCACAGCACATGATCAGCACAATTATTTTGTGATGCTTGCActagagagaataacagcacacctgTTTAACAAGGTTTGAGGCAATTGTAGAGGATCTTGGCgcactcctccatgcagaacattttaagcttcTTCTTCGGTTTGCATGCATGTCGACTtccctcttcaattcagaccacaggttttcattAGCATTCAAATCCAGAGACTAAGAAGATCAAAACacagatgtgtttgtgtttctttaatcatttttagGTTGCTTTGgtagtatttttgttttatcaaTTTGTTGGAAGCCCTGTCTATGGCCAAGACtaaacctcctggcagaggcaaccagatTTTATGATGAAATATCCAGTTCAGTCTTCATAAGAGCCCCTGAACTACCAGATACAAGACAGtccctgttta

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: MAP6 domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925891.2 True 3076 mRNA 0.46 5 10880241 10897751

Neighbor

gene id symbol gene type direction distance location
acsm3 acsm3,LOC108428295,LOC107749205,LOC107682913,LOC107735424 coding upstream 1585 10861959 ~ 10878656 (+)
ncapd2 ncapd2,LOC107692903,LOC107659972,LOC107749205,LOC107557881 coding upstream 19945 10838755 ~ 10860296 (+)
mul1a LOC108280869 coding upstream 161092 10711708 ~ 10719149 (+)
vwa5b2 LOC108280745 coding upstream 175749 10655409 ~ 10704492 (+)
ccl20a.4 NA coding upstream 345790 10532984 ~ 10534451 (+)
LOC113533503 cul3,LOC108261246,LOC104924156,LOC100710156,LOC107099750,LOC108240497 coding downstream 290047 11187798 ~ 11221863 (+)
ap1s3b ap1s3b,LOC108280899,LOC108428267,LOC107738797,LOC107660160,LOC107679405,LOC107552497,LOC107567705 coding downstream 340488 11238239 ~ 11253682 (+)
LOC113533219 LOC108280465,LOC108280463,LOC108280461 coding downstream 410270 11308021 ~ 11315878 (+)
LOC113533220 LOC108280463,LOC108280465,LOC108280461,LOC108428334 coding downstream 426376 11324127 ~ 11342139 (+)
LOC117599968 LOC108280463,LOC108280461,LOC108280465 coding downstream 459819 11357570 ~ 11374709 (+)
LOC113533661 NA non-coding upstream 32455 10847468 ~ 10847786 (+)
LOC113533665 NA non-coding upstream 34229 10845716 ~ 10846012 (+)
G318031 alg3,LOC107692886,LOC107730451,LOC107557882 non-coding upstream 172733 10706814 ~ 10707508 (+)
G318016 NA non-coding upstream 232048 10647921 ~ 10648193 (+)
G317967 NA non-coding upstream 297949 10582093 ~ 10582292 (+)
G318248 klhl24 non-coding downstream 62170 10959921 ~ 10987576 (+)
G318273 NA non-coding downstream 110197 11007948 ~ 11009146 (+)
G318331 NA non-coding downstream 209044 11106795 ~ 11169139 (+)
G318332 mbnl1,LOC108280526,LOC107567699,LOC107679403,LOC107745615 non-coding downstream 215202 11112953 ~ 11119827 (+)
G318426 NA non-coding downstream 505513 11403264 ~ 11404056 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other upstream 146153 10730346 ~ 10734088 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other upstream 311334 10563821 ~ 10568907 (+)
capn10 capn10 other upstream 317247 10536431 ~ 10562994 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other upstream 902325 9958993 ~ 9977916 (+)
G317390 NA other upstream 1465077 9412323 ~ 9415164 (+)
per2 LOC108280459,LOC108439864 other downstream 502133 11399884 ~ 11464769 (+)
G318439 NA other downstream 569548 11467299 ~ 11469499 (+)
G319170 NA other downstream 1867304 12765055 ~ 12803019 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other downstream 2123391 13021142 ~ 13154527 (+)
LOC113533270 mtcl1 other downstream 2939682 13837433 ~ 13897914 (+)

Expression


Co-expression Network