klf2b (LOC108280879)


Basic Information

Item Value
gene id klf2b
gene name LOC108280879
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16227671 ~ 16230299 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925892.2
GCaggcagagggagagagcgtgtgtgttttactcagagtaagtggagagagagagagcgccaCTCGACCTGCTCTTTTATACCGGCTATTTTTGGGCGCTCTACCTCCATCCTGAACGCCGTTTCCTCCGCTCGCACAATTGGTCCAGCAGCGGGGTTTATAAGGGAGGAGGGTTTTACCTGCCACACACTCGCTGCCCGCTCAGGACGCTGGAGCAGCACAGCTTTATGGGAAAGAAAACGAACTCTGGATCAGACGTgtattaacagttttttttgacGAGGAGAGCGGTGTATTTTACGCTCACACAaaaaagagggtttttttttaaagtgtaactTTGACGTTTTGGAAAATGGCTTTACCTGGGACCATTTTGCCTTCTATTTCTACATTCGCAGGACAGAAGGAGAAACTTTGGGAAAGTAGGTGGATTGGAGAAGTGGAGAAACCGCTGGCGTGCGCGGTACCGAGCGTGGATTCGTGCCGTGCCAGAAAGGACGACGAGGATCTGAGCGATTTCTTGGATCTGGAGTTTATTCTGGCCAACACGACCGGTCCTGAGAGCGTGGTGGGACCAGTGGACTATAATTCAACAGTGGAGCACTGCAGCATGTACCAGACAGGGAGCGCGTACGTGCCGCCTCCACCACCGTACTCCCACAGCCTAGTGGCGGAACTGTTGCACTCCGAAGCGGACAACACGTACGGCATGAgcacaaccaccaccaccaccaccagcagcagcaacagcatcgGGATTCAGGGCCGGTTCGTGGTGAACTCCGCGCCTTTCCCGAGGCAGGACTTCGTCGAGGGGATCAAAGTTGAGCCGTGCGCGGACGGCTACGGTCCcgtgctggggatggtgccacagAGCTGCCACCGGATCAAGCAGGAGGGCAACGTATCGTGCGCGATGCCCTTTGACCAGCCGAGGCTCGCCGTCTCTCCGCAAGCAGCGGGGAACATGACGCCGCCGCTCAGCCCGGACGACCAGGCGCGTTGTCACACGCAGATCTGCCGCACCACTTTCCCGCAGAACGGCTACTACGCAAGCCACGCGCCTCCtccgcagcagcagcagcagcaacaccaGCATCAGCAGGTGCCGCTGGCCTACGCGGGAGCGCGCGCATACGCAGGCATGTTCGATGACGGCCTCGGTATGGTGCAGCCCGGTGCGCCGCGCGCGCTCCTCACTCCGCCGTCCTCACCGCTCGACCTGCTCGAGTCCAAGCCGAAGCGCGGGCGACGCACCTGGCCGAGGAAGCGCGCGGCCACGCACACCTGCACGTTCGCTGGATGCGGCAAGACGTACACCAAGAGCTCGCACCTCAAGGCGCATCACCGAACTCACACCgGTGAGAAGCCGTACCACTGCAACTGGGAAGGCTGCGGCTGGAAGTTTGCCCGCTCCGACGAGCTCACACGTCACTTCCGCAAGCACACCGGTCACCGACCCTTCCAGTGCCACCTGTGCGAGCGCGCCTTCTCCCGCTCCGACCATCTGGCGCTGCACATGAAGAGGCACatgtgagagacacacacaagacaAACGGCAAAAAAGCCAAAGCCTTATTACTGCCTTATTTAAGTCCTTTGTACAAGACCAAAAGactgttttgttattattatttttttttttgggtcgaTAAAGATTTATATTGTTCTTTATACTTTTGTAACAATGTAGCTGGTACTACGTGGGATTTATAGAGCAGGCAGTTAAAGCGCTGCATAAGTGTTTTGGGGACAAACAGCAACCTGCAGGGCTGGtcctataatatataaaatctctatatctctatatatagCTCTGTTGAAACTGGAAACAATGTGTAAGTTTAACATGGTGCCTTTATAGTGATGAATTTAGCATGCATGCTGTGCTGCCAGGATTGTGCACAACGTGACATCCTGAAATCATGCGTGATGACAATGTTTTCCTCTTGAAACTGCCTCCAAATTGTTCTAAGGACCAGAACTGTGCGTTCACTCAAGTTTGATACATTCTCAGCCATTTGGTTTTCATGGAAGTAAGATATTTTCTAGATGTTGTATCATGAAGGTACAATAACCTGTTCAAGCCCCATTGTACACTAGCACATACACCAGGGCTAGACgctctgcattatttttttttttaaagaatgtgtaCATACGTTTTATATTGTaagtattgtatttattgtacatattaAACTAAATTTGAATATATTCCTGG

Function

NR:

description
PREDICTED: Krueppel-like factor 2

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K17845 KLF2; krueppel-like factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925892.2 True 2227 mRNA 0.52 3 16227671 16230299

Neighbor

gene id symbol gene type direction distance location
atcayb atcay,LOC108280696,LOC108427182,LOC105906996,LOC105906923 coding downstream 67454 16147863 ~ 16160217 (-)
nmrk2 LOC108280697,LOC108427183,LOC107750947,LOC103029326,LOC107552712,LOC107696854,LOC107687917,LOC107723974 coding downstream 84308 16140764 ~ 16143363 (-)
LOC117599986 LOC108280695 coding downstream 95209 16131569 ~ 16132462 (-)
LOC113533206 loxl5b,LOC108280695,LOC108427108 coding downstream 95870 16128701 ~ 16131801 (-)
pgpep1 pgpep1,LOC107596298,LOC107552686,LOC107660389,LOC107696873 coding downstream 132817 16090524 ~ 16094854 (-)
ap1m1 ap1m1,LOC107696211 coding upstream 78259 16308558 ~ 16326957 (-)
LOC113533484 LOC108280930,LOC108427189 coding upstream 105704 16336003 ~ 16342837 (-)
cib3 cib3,LOC107687907 coding upstream 155128 16385427 ~ 16392280 (-)
cirbpa cirbpa,LOC108280649,LOC107655466,LOC107574409,LOC107729620,LOC107665639,LOC107712399 coding upstream 239800 16470099 ~ 16473688 (-)
LOC113533290 midn,LOC108271022 coding upstream 279262 16509561 ~ 16526583 (-)
G321354 calr3b,LOC107750920,LOC107696693,LOC108280796,LOC107552714 non-coding downstream 4357 16187976 ~ 16223314 (-)
G321349 NA non-coding downstream 128433 16098868 ~ 16099238 (-)
G321347 NA non-coding downstream 178028 16049442 ~ 16049643 (-)
G321330 NA non-coding downstream 185930 16040881 ~ 16041741 (-)
LOC117595737 NA non-coding downstream 400327 15811353 ~ 15827344 (-)
G321465 NA non-coding upstream 144211 16374510 ~ 16375343 (-)
G321468 NA non-coding upstream 163909 16394208 ~ 16456123 (-)
LOC117595731 NA non-coding upstream 164454 16394753 ~ 16395539 (-)
G321470 NA non-coding upstream 169001 16399300 ~ 16401527 (-)
G321505 NA non-coding upstream 288089 16518388 ~ 16520370 (-)
LOC113533563 NA other downstream 503315 15687082 ~ 15724356 (-)
LOC113533479 LOC108280451 other downstream 996091 15222778 ~ 15231580 (-)
theg NA other downstream 1482184 14731734 ~ 14745487 (-)
LOC113533556 LOC108280202 other downstream 2547561 13665181 ~ 13680110 (-)
ccl25a NA other downstream 2611928 13612516 ~ 13615743 (-)
G321462 NA other upstream 127275 16357574 ~ 16367004 (-)
stk11 stk11 other upstream 334409 16564708 ~ 16587816 (-)
trnal-uaa_3 NA other upstream 743228 16973527 ~ 16973770 (-)
G322080 NA other upstream 1269766 17500065 ~ 17500832 (-)
LOC113546399 LOC108280496,LOC108430154 other upstream 1623548 17853847 ~ 17872108 (-)

Expression


Co-expression Network