LOC113533638 (apcdd1,LOC108280926)


Basic Information

Item Value
gene id LOC113533638
gene name apcdd1,LOC108280926
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15175775 ~ 15191239 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925902.2
TCGGAACGCTTGTCACTAGTAAAAGGCTCTGAGTTTAGAGATCAGCCTCCAGTGGCGATGGCGAACTTGGAGATGAAAGTTCTCTAAAGGAAGTTGTCTTTGAGCTCATCTGGTCCCGGTGCAATGCGCTCGCTCTCCTCCCCGGTCTAACGACtccacacaccccaaacaccgACGCGGTTCTTCGGCTCATCGGCGCTTCAGCGCTGGGCGAAGAGCCGACACTTCATCAGCCGAGGTTCATCGGGCTATCCGGGGCTCCGGAGGCTCACTCTGACCCCGCAGAGTCTCCAGCGAGTTCTTAGAGGTCTGGATGCGTTTTTGCGCGCTTTGATTTGCGCTTTATTTGGGCAGCACCAAAGTGGAAGTGCATGAAGACACAATGAGGAGCTGTGTCTCAGGCTGCAGGAGAATGGACATGACTGTAACACTGCTGCTGGTCACGCTTGCAGGCTGGACAGTGGGCTCATCTCTGTATGTTTCGGACAGTCGATCACCTCGTCTGGCTCTGGAGAAAAGCTTGAGCTGGCCGCCCAAAGACACACAGTGCCAGCACATGCTAAAGCGTCTCCATAATGGAGCACGTGTTACCGTGCAGATGCCCCCCAACATAGAGGGCCACTGGGTCTCCACCAGCTGCGAGGTACGTCCTGGCCCAGAGTTCATCACCCGCCTCTACCACTTCCAACATAACCACACTTTTCAGGCCCGCCAGTTTTACTACGCCGACAACCACTGCACAGTGCCCACCTACACGCTGGTGATCCAGGGCCGTGTGCGCATGCGCCAGGCCTCGTGGATCATCCGTGGTGGCACAGAGGCTGATTACCACATCCACCACATTCAGGTGGTGTGCCACTCTACGGGCACGGCAAAGGAGCTAAGCAGGCGTTTGGCACAGAGCTGTGAGGGAATGAAAGGCGCCTCCTTGGAGCCAAACATAAGTTATGAGCTGTGTAGCGAAGAAGGAAGCTGCAACTGCTCTCGCGGCCTGAACTTCGCCATGCACGAGCTGCAGCTGCTGCGTGTTGAGAAGCAATACGTGAACAGGAACATGGAGCAGCCGGTGGAGGAGCTCTTTCTAGGTGATATCAATACTGAGCCGAGCCAGAGGATGAGCCACAGGCCCTCTAGCTATCAGCCACCACTGCAGAACGCCAagAGTCATGAGCAGAACTGCATCGCGTGTCGGATCATCTCGCGCTCGGACGAGTTCCACCCTCCAGTCCTGCCGCCAAGGCCCGAGCTCGCTGTAGACCTGCACGGACAGTGGGTTTCCCAGCGGTGTGAAGTTCGGCCAGACGCACTCTTCCTCACAAGACATTTCATCTTCCATGATAACAACAACACTTGGGAGGGTCACTACTACCACTACTCAGATCCCGTCTGCAAGCACCCAACTTTCAGCATCTTTGCCAGGGGGAGGTACAGCCATGGTGTACACTCCACCCACATCATGGGTGGAACTGAGTTTGTGTTTAAGGTGAACCACATGCGGGTGGTACCAATGGACCCAGGCACTACATCTCTCCTGAATATCTTTGATGGGAATGAATGTGGCGCTCAAGGCTCGTGGCAGATTGGAGTCGAGCAGGATGTGACATTGACCAACGGCTGCGTGGCGCTGGGGATCCGCCTCCCACACACCGAGTACGAGCTCTTTCGCATGGAGCAGGACCCTCACAGTCGCTACCTGCTCTACAACGGCCAGCGGCCCAGCGACGGCTCCAGTCCTGACCGGCCTGACAAACGTGCCACTTCCTACCAGACTCCGCTGGTGCAGTGCTCAGCCAACAGCCAGAAGTCAGAGGTCAACCTTGGTCACCATACAAAACGGCAGCAAAAGTTGAATAACAGCTGTTGCCCAGCTCACCAAAGCTACTTGATGGAAACTGTGGTTCTTGTGGGATTAAACATGCTGATTATGCACTTCATTGGTTGAAAGAAAAACTCCAGAAGCTGAACTGATATTTCTGTACATCTTTGTACATATTGACACAAGGAGGACCAGAGAAACGTAAGAACGCACTCTGGCCATCTGGGAACAAGTTTACTTGACACACTTGGGCATTCTGCTCATTTTTCTGGTTTCTGGCCTACATCGAGGGTGGATTAAATGGAGATGGAGAAATGTGTGGGGAggcaaaatgtcttttttctgCCTCTGTACATTACAGACTGCAAAGAACTGAAACTGCTGCACCACAGTAACTGCACTTTAATAAAGCATGACTGGCAACTTGTATggttccaataaaaaaaaaagtgtttgataACCCTTGTTATGTTATCAGCTTCATCAAAGAGGgtttcctgtttattttctcaAGCTTAGCTGTAGACATATATGCTAACAAAGAGATATTTTTCTATGGTATGATGCGTGTGAGTGTGCAAGTGCATTTGAAATGATAATATGAACCAATTCAGGGTTGTGTAGATTGAAAGGGAATGACAGTGTACCATATTGTCAGTGATGAACTCTTATAGGACGGTAAAGaattaacatttgtttttcattcgtGAAACAGGAAACTGTAAAGCTGTTACACGGTGTTCATGTTTAGTTTGGAGCAAAGCTGGAACAGGGAGGCAGAAGAGTGCCAGTTCTGATTTCCTGATGGTTCGTGATGTCTGCATGCATGCTGTAAGCTATCATTTTTGCTTACTGTATTGGGTTATGGCATGAAGAATATTCCAAGGAATTGCGGCTTCAGATGTCCCACCAAAAACTGACATTCTTCATTGCAGTTTGATCCAGAACTGGATCGGAAATGAAATGGCAATATTAATTTCCCTCACTGGTATGAACTGTGTTTGCTGAAAGAGCAAGCAGAGTAAAACATGATCCTTTTTGAGACAGAGAGGTTATGAGGCattacagagtttttttttttccagatttttgtgttttgttttgatagaGTACTATATTGTTACTAAAGCCTATGTAGATCCACAGCTGAACTACATGCATCATTACCTGTAAGTGCCTTAAAAAGACATTGTCCTAATAACTGGATTGTAAgaatagaaattaaatatttgaatgGGTTGTA
>XM_026925903.2
CGGAACGCTTGTCACTAGTAAAAGGCTCTGAGTTTAGAGATCAGCCTCCAGTGGCGATGGCGAACTTGGAGATGAAAGTTCTCTAAAGGAAGTTGTCTTTGAGCTCATCTGGTCCCGGTGCAATGCGCTCGCTCTCCTCCCCGGTCTAACGACtccacacaccccaaacaccgACGCGGTTCTTCGGCTCATCGGCGCTTCAGCGCTGGGCGAAGAGCCGACACTTCATCAGCCGAGGTTCATCGGGCTATCCGGGGCTCCGGAGGCTCACTCTGACCCCGCAGAGTCTCCAGCGAGTTCTTAGAGGTCTGGATGCGTTTTTGCGCGCTTTGATTTGCGCTTTATTTGGGCAGCACCAAAGTGGAAGTGCATGAAGACACAATGAGGAGCTGTGTCTCAGGCTGCAGGAGAATGGACATGACTGTAACACTGCTGCTGGTCACGCTTGGCTGGACAGTGGGCTCATCTCTGTATGTTTCGGACAGTCGATCACCTCGTCTGGCTCTGGAGAAAAGCTTGAGCTGGCCGCCCAAAGACACACAGTGCCAGCACATGCTAAAGCGTCTCCATAATGGAGCACGTGTTACCGTGCAGATGCCCCCCAACATAGAGGGCCACTGGGTCTCCACCAGCTGCGAGGTACGTCCTGGCCCAGAGTTCATCACCCGCCTCTACCACTTCCAACATAACCACACTTTTCAGGCCCGCCAGTTTTACTACGCCGACAACCACTGCACAGTGCCCACCTACACGCTGGTGATCCAGGGCCGTGTGCGCATGCGCCAGGCCTCGTGGATCATCCGTGGTGGCACAGAGGCTGATTACCACATCCACCACATTCAGGTGGTGTGCCACTCTACGGGCACGGCAAAGGAGCTAAGCAGGCGTTTGGCACAGAGCTGTGAGGGAATGAAAGGCGCCTCCTTGGAGCCAAACATAAGTTATGAGCTGTGTAGCGAAGAAGGAAGCTGCAACTGCTCTCGCGGCCTGAACTTCGCCATGCACGAGCTGCAGCTGCTGCGTGTTGAGAAGCAATACGTGAACAGGAACATGGAGCAGCCGGTGGAGGAGCTCTTTCTAGGTGATATCAATACTGAGCCGAGCCAGAGGATGAGCCACAGGCCCTCTAGCTATCAGCCACCACTGCAGAACGCCAagAGTCATGAGCAGAACTGCATCGCGTGTCGGATCATCTCGCGCTCGGACGAGTTCCACCCTCCAGTCCTGCCGCCAAGGCCCGAGCTCGCTGTAGACCTGCACGGACAGTGGGTTTCCCAGCGGTGTGAAGTTCGGCCAGACGCACTCTTCCTCACAAGACATTTCATCTTCCATGATAACAACAACACTTGGGAGGGTCACTACTACCACTACTCAGATCCCGTCTGCAAGCACCCAACTTTCAGCATCTTTGCCAGGGGGAGGTACAGCCATGGTGTACACTCCACCCACATCATGGGTGGAACTGAGTTTGTGTTTAAGGTGAACCACATGCGGGTGGTACCAATGGACCCAGGCACTACATCTCTCCTGAATATCTTTGATGGGAATGAATGTGGCGCTCAAGGCTCGTGGCAGATTGGAGTCGAGCAGGATGTGACATTGACCAACGGCTGCGTGGCGCTGGGGATCCGCCTCCCACACACCGAGTACGAGCTCTTTCGCATGGAGCAGGACCCTCACAGTCGCTACCTGCTCTACAACGGCCAGCGGCCCAGCGACGGCTCCAGTCCTGACCGGCCTGACAAACGTGCCACTTCCTACCAGACTCCGCTGGTGCAGTGCTCAGCCAACAGCCAGAAGTCAGAGGTCAACCTTGGTCACCATACAAAACGGCAGCAAAAGTTGAATAACAGCTGTTGCCCAGCTCACCAAAGCTACTTGATGGAAACTGTGGTTCTTGTGGGATTAAACATGCTGATTATGCACTTCATTGGTTGAAAGAAAAACTCCAGAAGCTGAACTGATATTTCTGTACATCTTTGTACATATTGACACAAGGAGGACCAGAGAAACGTAAGAACGCACTCTGGCCATCTGGGAACAAGTTTACTTGACACACTTGGGCATTCTGCTCATTTTTCTGGTTTCTGGCCTACATCGAGGGTGGATTAAATGGAGATGGAGAAATGTGTGGGGAggcaaaatgtcttttttctgCCTCTGTACATTACAGACTGCAAAGAACTGAAACTGCTGCACCACAGTAACTGCACTTTAATAAAGCATGACTGGCAACTTGTATggttccaataaaaaaaaaagtgtttgataACCCTTGTTATGTTATCAGCTTCATCAAAGAGGgtttcctgtttattttctcaAGCTTAGCTGTAGACATATATGCTAACAAAGAGATATTTTTCTATGGTATGATGCGTGTGAGTGTGCAAGTGCATTTGAAATGATAATATGAACCAATTCAGGGTTGTGTAGATTGAAAGGGAATGACAGTGTACCATATTGTCAGTGATGAACTCTTATAGGACGGTAAAGaattaacatttgtttttcattcgtGAAACAGGAAACTGTAAAGCTGTTACACGGTGTTCATGTTTAGTTTGGAGCAAAGCTGGAACAGGGAGGCAGAAGAGTGCCAGTTCTGATTTCCTGATGGTTCGTGATGTCTGCATGCATGCTGTAAGCTATCATTTTTGCTTACTGTATTGGGTTATGGCATGAAGAATATTCCAAGGAATTGCGGCTTCAGATGTCCCACCAAAAACTGACATTCTTCATTGCAGTTTGATCCAGAACTGGATCGGAAATGAAATGGCAATATTAATTTCCCTCACTGGTATGAACTGTGTTTGCTGAAAGAGCAAGCAGAGTAAAACATGATCCTTTTTGAGACAGAGAGGTTATGAGGCattacagagtttttttttttccagatttttgtgttttgttttgatagaGTACTATATTGTTACTAAAGCCTATGTAGATCCACAGCTGAACTACATGCATCATTACCTGTAAGTGCCTTAAAAAGACATTGTCCTAATAACTGGATTGTAAgaatagaaattaaatatttgaatgGGTTGTA

Function

symbol description
apcdd1 Enables Wnt-protein binding activity and identical protein binding activity. Involved in hair follicle development and negative regulation of Wnt signaling pathway. Is integral component of plasma membrane. Implicated in hypotrichosis 1.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925902.2 True 3059 mRNA 0.49 6 15175775 15191239
XM_026925903.2 False 3055 mRNA 0.49 6 15175776 15191239

Neighbor

gene id symbol gene type direction distance location
LOC113533364 epb41l3,LOC108280699,LOC108427206 coding upstream 35923 15118493 ~ 15139852 (+)
scn12aa scn12aa,LOC100304599,LOC108427209,LOC107655859,LOC107713684,LOC107558292 coding upstream 370969 14778222 ~ 14804806 (+)
chico chico,aes,LOC108280588,LOC108427216,LOC107558286,LOC107667856,LOC106574496 coding upstream 546926 14602769 ~ 14628849 (+)
gna11b gna11b,LOC103033252,LOC108280682,LOC108427217,LOC105889474,LOC107600186,LOC107667855,LOC107696027,LOC107558284 coding upstream 581454 14550309 ~ 14594321 (+)
LOC113533212 LOC108280212,LOC108427118,LOC568754,LOC107558277,LOC107667866,LOC107729992,LOC107600185,LOC107750900,LOC107696035 coding upstream 688392 14481676 ~ 14487383 (+)
ncstn ncstn coding downstream 40308 15231547 ~ 15240528 (+)
si:dkey-10o6.2 LOC108280456,LOC108280457,LOC107746564,LOC107656853,LOC107715131,LOC107656841 coding downstream 50790 15242029 ~ 15248003 (+)
nectin4b LOC108280452 coding downstream 63951 15255190 ~ 15268619 (+)
si:dkeyp-68b7.12 arhgap30 coding downstream 90002 15281241 ~ 15292624 (+)
si:dkeyp-68b7.5 LOC108280921 coding downstream 101536 15292775 ~ 15297536 (+)
G320386 NA non-coding upstream 504106 14613999 ~ 14671669 (+)
G320371 NA non-coding upstream 615162 14549223 ~ 14560613 (+)
G320212 NA non-coding upstream 716766 14458672 ~ 14459009 (+)
G320211 NA non-coding upstream 719318 14455383 ~ 14456457 (+)
G320210 NA non-coding upstream 721824 14438716 ~ 14453951 (+)
G320797 LOC108280451 non-coding downstream 32632 15223871 ~ 15226072 (+)
G320843 NA non-coding downstream 119365 15310604 ~ 15310809 (+)
G320848 NA non-coding downstream 149327 15340566 ~ 15341207 (+)
G320935 NA non-coding downstream 270615 15461854 ~ 15463232 (+)
G320949 NA non-coding downstream 352658 15543897 ~ 15546092 (+)
LOC113533365 LOC108280254 other upstream 74314 15082238 ~ 15101461 (+)
LOC113533366 NA other upstream 109404 15063721 ~ 15066371 (+)
ly97.3 LOC108280687 other upstream 346997 14827242 ~ 14828778 (+)
tle2c zgc:136336,LOC108280589,LOC108427215 other upstream 509267 14637781 ~ 14666508 (+)
rab31 rab31 other upstream 709022 14386238 ~ 14466753 (+)
fcer1gl LOC100304589 other downstream 58276 15249515 ~ 15253555 (+)
si:dkeyp-68b7.7 LOC108280928 other downstream 107822 15299061 ~ 15303288 (+)
LOC113533167 NA other downstream 375315 15566554 ~ 15570478 (+)
slc25a42 slc25a42,LOC107696381 other downstream 434563 15625802 ~ 15682276 (+)
G321088 NA other downstream 677777 15869016 ~ 15870995 (+)

Expression


Co-expression Network