cnpy1 (cnpy1,LOC108435706)


Basic Information

Item Value
gene id cnpy1
gene name cnpy1,LOC108435706
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 1053868 ~ 1066467 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940830.2
CGTGTCAATCACCGCCGCTGTCAGCACGCTTGTCGGTCGTGGCAGCGCCACAGACCGGCACGTAAGATATTTCTACCTTTTTGTCTAGAGAACCTGTAAATCTTGTTCCAGgagcacagagagagggaaaacacGGACAGTTCCTGTTCACCTGCTTTGCTCTTACAAGCTCACATTGTCTTTAAGGTCGTGTTTCATTCGCTTAGATTAATAACAGGGAAAAGTTTCTCCTCGCTCACCTGCTGTGTTTTCACACTACAGTACGGACAGGTGCTCAGTATGGTGCAGTGGATCGGCTTTGTGTTCGTCCTGACGGCTGTCGTGTCTAAAACAGCAGAGGGGAAGAGAGATGAAGTGCTCTACTGCTCAGCCTGCATGGCGATCGCTGAGGAGCTGGAATACTCCATTAGCCAGATCGACCCGAAGAAGACCATCCATGTTGGAGGCTTCAGGCTGAATCCTGATGGAAGTCTCTCTGATAAAAagGTTCCGCTGGCTCGCTCTGAGACTCACCTGTCCGAGCTGTTGGACGGAGTTTGTAATAACATGAGCGATTACGCGCTGTACGAGGACCCCGACACTAAACAACAGAGCTACAGGAGATTCGCACCGAGGAGCAGCGACGGCGGGAACTTTCCAGAtttcaaaaattttaaattctcCGGACCTGAAGGTTCAGATTCCTTAAAGTTTGCTtgtgaaaCCATCGTGGAGGAGTTGGAGGACGACATCATCACTCTGTTCGCACGGGAAGACGAGCGCGTGGCCCAGAAGTTGTGCAGCGAAGtgtcagGTCACTGTAAAAGCGCCGTGTTCCAGCACGCTGAGCTGTGATTGAACACCGACGCTGACCAAACACCTCGAATGCTCAGAGCCGGACCGGGCTCCGAACAGAACCGCAACGACGGACCAGATCTCATAATAAACAAGCAAAGACCAGTGTAAAGTGTTTTTGTAAAGATCCATGACGTTGAGTTGTAATAGTATTTtgataaagaataataaaagtgttttaaacGAA
>XM_026940831.2
TGAGCCCAAGCACCAGGCGAGCCCTGTGCTCCAGGGCACTGTTTGCACTGCCAGAGGACAGTCTTTACACCTTTACTGAGCTGTAATCTCCAACCCAGGACGTTATAACAGCTTAGGAAGTCTGATTCAGGTGCTCAGTATGGTGCAGTGGATCGGCTTTGTGTTCGTCCTGACGGCTGTCGTGTCTAAAACAGCAGAGGGGAAGAGAGATGAAGTGCTCTACTGCTCAGCCTGCATGGCGATCGCTGAGGAGCTGGAATACTCCATTAGCCAGATCGACCCGAAGAAGACCATCCATGTTGGAGGCTTCAGGCTGAATCCTGATGGAAGTCTCTCTGATAAAAagGTTCCGCTGGCTCGCTCTGAGACTCACCTGTCCGAGCTGTTGGACGGAGTTTGTAATAACATGAGCGATTACGCGCTGTACGAGGACCCCGACACTAAACAACAGAGCTACAGGAGATTCGCACCGAGGAGCAGCGACGGCGGGAACTTTCCAGAtttcaaaaattttaaattctcCGGACCTGAAGGTTCAGATTCCTTAAAGTTTGCTtgtgaaaCCATCGTGGAGGAGTTGGAGGACGACATCATCACTCTGTTCGCACGGGAAGACGAGCGCGTGGCCCAGAAGTTGTGCAGCGAAGtgtcagGTCACTGTAAAAGCGCCGTGTTCCAGCACGCTGAGCTGTGATTGAACACCGACGCTGACCAAACACCTCGAATGCTCAGAGCCGGACCGGGCTCCGAACAGAACCGCAACGACGGACCAGATCTCATAATAAACAAGCAAAGACCAGTGTAAAGTGTTTTTGTAAAGATCCATGACGTTGAGTTGTAATAGTATTTtgataaagaataataaaagtgttttaaacGAA
>XM_034314540.1
GCTTGTCGGTCGTGGCAGCGCCACAGACCGGCACGTGCTCAGTATGGTGCAGTGGATCGGCTTTGTGTTCGTCCTGACGGCTGTCGTGTCTAAAACAGCAGAGGGGAAGAGAGATGAAGTGCTCTACTGCTCAGCCTGCATGGCGATCGCTGAGGAGCTGGAATACTCCATTAGCCAGATCGACCCGAAGAAGACCATCCATGTTGGAGGCTTCAGGCTGAATCCTGATGGAAGTCTCTCTGATAAAAagGTTCCGCTGGCTCGCTCTGAGACTCACCTGTCCGAGCTGTTGGACGGAGTTTGTAATAACATGAGCGATTACGCGCTGTACGAGGACCCCGACACTAAACAACAGAGCTACAGGAGATTCGCACCGAGGAGCAGCGACGGCGGGAACTTTCCAGAtttcaaaaattttaaattctcCGGACCTGAAGGTTCAGATTCCTTAAAGTTTGCTtgtgaaaCCATCGTGGAGGAGTTGGAGGACGACATCATCACTCTGTTCGCACGGGAAGACGAGCGCGTGGCCCAGAAGTTGTGCAGCGAAGtgtcagGTCACTGTAAAAGCGCCGTGTTCCAGCACGCTGAGCTGTGATTGAACACCGACGCTGACCAAACACCTCGAATGCTCAGAGCCGGACCGGGCTCCGAACAGAACCGCAACGACGGACCAGATCTCATAATAAACAAGCAAAGACCAGTGTAAAGTGTTTTTGTAAAGATCCATGACGTTGAGTTGTAATAGTATTTtgataaagaataataaaagtgttttaaacGAA
>XM_034314541.1
CGTGTCAATCACCGCCGCTGTCAGCACGCTTGTCGGTCGTGGCAGCGCCACAGACCGGCACGTAAGATATTTCTACCTTTTTGTCTAGAGAACCTGTAAATCTTGTTCCAGgagcacagagagagggaaaacacGGACAGTTCCTGTTCACCTGCTTTGCTCTTACAAGCTCACATTGTCTTTAAGGTCGTGTTTCATTCGCTTAGATTAATAACAGGGAAAAGTTTCTCCTCGCTCACCTGCTGTGTTTTCACACTACAGTACGGACAGCCTGCATGGCGATCGCTGAGGAGCTGGAATACTCCATTAGCCAGATCGACCCGAAGAAGACCATCCATGTTGGAGGCTTCAGGCTGAATCCTGATGGAAGTCTCTCTGATAAAAagGTTCCGCTGGCTCGCTCTGAGACTCACCTGTCCGAGCTGTTGGACGGAGTTTGTAATAACATGAGCGATTACGCGCTGTACGAGGACCCCGACACTAAACAACAGAGCTACAGGAGATTCGCACCGAGGAGCAGCGACGGCGGGAACTTTCCAGAtttcaaaaattttaaattctcCGGACCTGAAGGTTCAGATTCCTTAAAGTTTGCTtgtgaaaCCATCGTGGAGGAGTTGGAGGACGACATCATCACTCTGTTCGCACGGGAAGACGAGCGCGTGGCCCAGAAGTTGTGCAGCGAAGtgtcagGTCACTGTAAAAGCGCCGTGTTCCAGCACGCTGAGCTGTGATTGAACACCGACGCTGACCAAACACCTCGAATGCTCAGAGCCGGACCGGGCTCCGAACAGAACCGCAACGACGGACCAGATCTCATAATAAACAAGCAAAGACCAGTGTAAAGTGTTTTTGTAAAGATCCATGACGTTGAGTTGTAATAGTATTTtgataaagaataataaaagtgttttaaacGAA

Function

symbol description
cnpy1 Acts upstream of or within several processes, including Kupffer's vesicle development; midbrain-hindbrain boundary development; and regulation of fibroblast growth factor receptor signaling pathway. Located in endoplasmic reticulum. Is expressed in several structures, including forerunner cell group; margin; midbrain hindbrain boundary; midbrain hindbrain boundary neural rod; and polster. Orthologous to human CNPY1 (canopy FGF signaling regulator 1).

NR:

description
protein canopy-1-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0040036 regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940830.2 True 1021 mRNA 0.49 6 1053868 1066467
XM_026940831.2 False 881 mRNA 0.50 6 1054144 1066467
XM_034314540.1 False 785 mRNA 0.50 6 1053895 1066467
XM_034314541.1 False 921 mRNA 0.49 5 1053868 1066467

Neighbor

gene id symbol gene type direction distance location
shhb LOC108280234 coding upstream 41676 1003909 ~ 1012192 (+)
trpa1a LOC108280835,LOC108435699 coding upstream 88251 946792 ~ 965617 (+)
tmem70 tmem70 coding upstream 152244 898058 ~ 901624 (+)
rdh10b rdh10b,LOC108280502,LOC108435720,LOC107550714,LOC107664055 coding upstream 180102 868721 ~ 873766 (+)
cbln2a cbln2a,cbln2,LOC108280218,LOC107586364,LOC107550708,LOC107686082,LOC107664049 coding upstream 326003 723451 ~ 727865 (+)
cahz cahz coding downstream 284796 1351263 ~ 1357482 (+)
cdh6 LOC108280858,LOC108432255,LOC107678945,LOC107667294,LOC107567409 coding downstream 821283 1887750 ~ 1935629 (+)
zgc:163121 LOC108280641,LOC108432257 coding downstream 916849 1983316 ~ 2018166 (+)
LOC113543213 rnf31,LOC108432260 coding downstream 975733 2042200 ~ 2060017 (+)
xkr4 xkr4,zgc:123035,LOC107714844,LOC107728991,LOC107674319,LOC107679338 coding downstream 1002894 2069361 ~ 2116180 (+)
LOC117599981 NA non-coding upstream 73817 976621 ~ 980051 (+)
G312540 NA non-coding upstream 147422 906234 ~ 906446 (+)
G312534 NA non-coding upstream 167754 883404 ~ 886114 (+)
G312531 NA non-coding upstream 177988 875663 ~ 875880 (+)
G312509 rpl7,LOC107664057,LOC107584398 non-coding upstream 187147 862387 ~ 866721 (+)
LOC117599954 NA non-coding downstream 23391 1089858 ~ 1104324 (+)
LOC117599969 NA non-coding downstream 296909 1363376 ~ 1370691 (+)
G312877 NA non-coding downstream 455834 1522301 ~ 1522511 (+)
LOC113543035 NA non-coding downstream 558096 1624563 ~ 1662193 (+)
G313016 NA non-coding downstream 828235 1894702 ~ 1894947 (+)
jph1b jph1b,jph1,LOC108280498,LOC107550709,LOC108435725,LOC107584332,LOC107746914,LOC107686034,LOC107664083,LOC107732545 other upstream 206851 820530 ~ 847017 (+)
LOC113543349 iws1 other upstream 336577 704778 ~ 717291 (+)
atpv0e2 LOC108280382,LOC100691746,LOC107588449,LOC107551367,LOC107706116 other upstream 552479 413619 ~ 501389 (+)
snap91a snap91,LOC108280370 other upstream 734906 274822 ~ 318962 (+)
pnrc2 pnrc2 other upstream 860334 189539 ~ 193534 (+)
paxip1 paxip1,LOC106569237,LOC107550719 other downstream 62442 1128909 ~ 1147376 (+)
c21h5orf22 c20h5orf22,LOC107714825 other downstream 899273 1965740 ~ 1977309 (+)
tgs1 tgs1 other downstream 1066683 2133150 ~ 2145237 (+)
G313112 zswim5 other downstream 1115512 2181979 ~ 2185677 (+)
LOC117599997 LOC108280771,LOC108435500 other downstream 1588733 2655200 ~ 2662399 (+)

Expression


Co-expression Network