meis3 (meis3,LOC107677073,LOC107598789,LOC107741525,LOC107726131)


Basic Information

Item Value
gene id meis3
gene name meis3,LOC107677073,LOC107598789,LOC107741525,LOC107726131
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 6997484 ~ 7008738 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940849.2
GcgcgagcgtgtgtgtgtgataagaaGGGGGGCGCGAGAGACCCCGTCGCGTTTTGACCCCCGAAACGACTCCCGATCTCCAGCATCGCTCCCGCCTCCATTCGGCTTTTTAAACCGGGCCCACTGCTCGCTtcgcatccacacacacacacacactcactctcacactctcactcacacacacacacacgcgcgcataTCCTTTTACAGCTTGTTGTCTCGGTCCATGGATGTGGTGATACACGGAGCAGATCGCCACACTGCCGCCGTGATCTGCGTCTCTCCAGCCCGCCGAGCAGCACCGATTCACCGCGGAacagcctgacacacacacacggagagagagcgagggagcaagagagagagagagagagcaagagagagagagagagagagagacagaggatcCCCGCGTCTCAAGTGATTGGGACTGGTGGTGTGTTCTGTCCCGGACTGCCGGATCGGTGTGTGTTGTCTTCCGCGAGAAGAGCGCGGCTTTCCGTGGCGCATGGAGAAAAGGtatgaAGAGCTGGTGCAGTACccagggtcagaggtcatgccCGTGGGGGGGTACGGGGAGGTGATGAGGTCACTACCGCCGCCTCACTATGGCCACGGCGTTCCTGACTCTCTCAAACACTACCGTGATCAGATCTACGGCCACCCTCTGTTTCCACTCCTGGCCTTGGTGTTTGAGAAGTGTGAACTGGCCACATGCTCACCACGCGACTCCAGCTCGCTGTCAAATGCGTCCCATCATCCCAGCATGACGGGTCACAGCGACGTCTGCTCTTCCGAATCATTCAACGAAGACATCGCGGCCTTCGCCAAACAGATCCGTTCAGAGAAACCCATCTTTTCATCAAATCCAGAACTGGATAATCTGATGATCCAGGCCATCCAAGTACTACGCTTCCACCTACTAGAGCTAGAAAAGGTTCATGATCTGTGTGACAATTTCTGTCATCGTTACATCACCTGTCTTAAGGGCAAAATGCCCACTGATCTGGTGCTAGAGGATCGCGAGTCAGGATCCAAATCTGACATGGAGGATTTCACTGGTTCTTGCACAAGTCTTTCAGAGCAGAATCAGTCTTGGCTGCGAGACACAGACGACTGTTTGTCAACGCCGTCAGGCACCCCGAGCGCCTCCTGTGGACTCGCCACGCACAGTGTGGACGCTTGCAGCGACGCTGGAGATGGACTGGATGGCGCTGTAGCGTCTCCCAGCACAGGAGAAGAGGACGAGACAGACCGAGACCGACGAAACAACAAGAAACGAGGGATCTTTCCCAAAGTGGCAACCAACATCATGAGAGCTTGGCTCTTCCAGCACCTATCACATCCGTACCCTTCCGAAGAACAGAAAAAGCAACTGTCTCAAGACACAGGACTCACCATCCTTCAGGTCAACAACTGGTTTATAAACGCCCGACGCAGAATAGTCCAGCCCATGATTGACCAGTCGAATCgctcagGTCAAGGTGCCCCGTACAGCCCAGAGGGTGGAGCGCTAGGAGGTTATGGATTAGACAGTCAGCCTCACTTAGGCCTTCGGACAGCAGGTCTTCAGGGAATGCCGTCTCTGCCTGCAGACTACCCCGGCGCGCTCTTGCCCCAGCCGGGCTACACCCATGCGGCGCCGTCGCTGCACCCTTACCCCGGCCCCCACCCTGCCATGCTACTGCACCCACCCCCTCATCCGCACTCCGCCGAGCCTCTAATTGGACAAGGCCTGGACATCCATGCCCACTGAGAGCGGGGGGAGGGGAAAGGGCTAACAGGAAACCGGGCTCACACACTCCGAGTGCACTAGTTTCACCTCAGTAACATGACGGCACCATGTGTAACATTGACACCATGTCATGTTATGACACTAACCCTTTATAATCACTGTCTTAAAAACTGACGAAACCttctatgtctttttttttatattacaaacTGATATAAGAGTCAACACAGAGTGGTATGGTTCAGGCTTTTTTCTACTGCACAAAGTACTGGAAATTTTGGCAACTCAAAACTGGATCTGGATTTTGCTTCATCAGCCAAAGTGCTGGGCTGAAGGTTTCCAGCTTTATAGTTATCAATAAGCACCAACAAAGAACCGATGGTACTCGGGGACATGCCACGTAAAATACTTTGTAGATTTGCCAACATTGTGCTGTACTATTTCTTAACATGTGccaacttttaattttaatttctttaaaaaaaacatagaagcacaacaaattatttttacaaacaaattaCCTTTCTTGATTATATGCAGTGCAATTTAACAGAGGTTCTAATTGTGTTCCAAATGTGCATTGTACAATGctattttcatcatatttttgTTGGCAATCTgttaaaagtaaattaatttaatcataGTGCAGATTTATTGATTAGTTCTTATTGTTGATGAAATGTAATAATCCATTAACAAGCCTTTTTCGGCCTGTAATTTCATTAATTGAATCGCTTATTCCATGTTGAATTTGACCATGGTGCTGTttactctcagaaaaaaagggtactaagtgttgttgttgttgatgtcattgttgttgttgttgttgttgggggTGGTGCACCTTTTGTATGTATcatttacctagaaaggtgccTCTAGTGTATCTTTAACGCTGTACTCTAAAAACTAAATATGGTCCTTTTTATGTACCTTAAGTCATTTTAAAAGCtacactatatccacatttccaggtgaaagatacatattaaaggaaaaacgaTGCATCCTTGATTCACAGTATCACCccgtgacaaaaaaaaagtagtttaaTACTGAGAGTGTTGCACCATAATGACAGAGTACTCATTTTTATGTTATATCTATGAATCTGGCAGAGAATGTCCCAGAACCCCAA

Function

symbol description
meis3 Enables sequence-specific DNA binding activity. Involved in hindbrain development and positive regulation of transcription by RNA polymerase II. Acts upstream of or within autonomic nervous system development; exocrine pancreas development; and positive regulation of histone acetylation. Located in cytoplasm and nucleus. Is expressed in several structures, including fin bud; mesoderm; neural keel; neural plate; and posterior neural tube. Orthologous to human MEIS3 (Meis homeobox 3).

NR:

description
PREDICTED: homeobox protein meis3-like

GO:

id name namespace
GO:0031017 exocrine pancreas development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0030902 hindbrain development biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005515 protein binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K16671 MEIS3; homeobox protein Meis3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940849.2 True 2882 mRNA 0.48 13 6997484 7008738

Neighbor

gene id symbol gene type direction distance location
LOC113543373 prss16 coding upstream 14838 6971552 ~ 6982646 (+)
ech1 ech1,LOC107598793,LOC107677099 coding upstream 27536 6961943 ~ 6969948 (+)
hnrnpl2 hnrnpl,LOC107730992 coding upstream 38595 6945526 ~ 6958889 (+)
LOC113543204 gbas,LOC108413275,LOC102196085,LOC100692767,LOC102291788,LOC102797551 coding upstream 93402 6896246 ~ 6904082 (+)
LOC113543083 axl,LOC107572376,LOC107663740 coding upstream 527373 6434266 ~ 6470111 (+)
atm atm,LOC106522150 coding downstream 136663 7145401 ~ 7203200 (+)
dscamb dscamb,dscam,LOC108280204,LOC108413375,LOC107562808,LOC107726116,LOC107561601,LOC106612992 coding downstream 250534 7259272 ~ 7394464 (+)
LOC113543091 NA coding downstream 433366 7442104 ~ 7453708 (+)
brwd1 brwd1,LOC108280674,LOC108410482,LOC107677081,LOC107567576,LOC107730991,LOC107655817,LOC107747676 coding downstream 457895 7466633 ~ 7490001 (+)
LOC117595729 NA coding downstream 480632 7489370 ~ 7493819 (+)
G315901 NA non-coding upstream 62307 6934949 ~ 6935177 (+)
G315894 NA non-coding upstream 81943 6914261 ~ 6915541 (+)
G315886 NA non-coding upstream 102867 6894337 ~ 6894617 (+)
G315862 NA non-coding upstream 270796 6726474 ~ 6726688 (+)
G315811 NA non-coding upstream 343421 6646145 ~ 6654063 (+)
G315968 NA non-coding downstream 24827 7033565 ~ 7033806 (+)
G316000 NA non-coding downstream 118953 7127691 ~ 7129877 (+)
G316288 NA non-coding downstream 417723 7426461 ~ 7433424 (+)
G316317 NA non-coding downstream 496341 7505079 ~ 7505404 (+)
G316339 NA non-coding downstream 556348 7565086 ~ 7568068 (+)
LOC113543138 LOC108280551,LOC108414043,LOC105006373 other upstream 52494 6937340 ~ 6944990 (+)
G315581 cldnj,LOC108280332,LOC108424024,LOC107749063,LOC107680085,LOC107551261,LOC107703975 other upstream 770244 6226717 ~ 6227240 (+)
shox2 shox2,LOC107720426,LOC107598669,LOC107703017,LOC107709009,LOC107661335 other upstream 1095918 5894504 ~ 5901566 (+)
si:dkeyp-97b10.3 LOC108280535 other upstream 1626587 5341009 ~ 5370897 (+)
trnat-agu_13 NA other upstream 1777866 5219545 ~ 5219618 (+)
G316001 NA other downstream 124721 7133459 ~ 7135501 (+)
crsp7 LOC108280732 other downstream 573575 7582313 ~ 7598164 (+)
G316413 NA other downstream 686796 7695534 ~ 7695919 (+)
fitm1 fitm1,LOC107688462,LOC107585187,LOC107722554,LOC107589905 other downstream 742956 7751694 ~ 7756961 (+)
G316744 NA other downstream 1254601 8263339 ~ 8264061 (+)

Expression


Co-expression Network