LOC113543011 (LOC108280892)


Basic Information

Item Value
gene id LOC113543011
gene name LOC108280892
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 4283167 ~ 4290110 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940923.2
catttataatctTCATTCATTTTGCTTTCTCCCAGGCAAGAAGTTTTACATGCAGCTTCTTATCATGACTATGAGCTCAGGGCATTTTTCATGTAGTTTAGCTGGTTTGTATAGTTTCTATCATAGACTATCAGTTGTTGTGAGCTATAAGGGTAGTGCATTTAAGCATTAATGATTAATCCTGTAGGAACATTAAAACTCTGCTTTCTTTGGAAGTTTCCTAGGAAGCACTGATAGCCATTTTATTGTTCAAAGGCAGTATTCTTATAAGACAGATATTTTGAAGAGCTCTTAGTCTTAAAGAAAGCACTGTGTGCAGAAAATGCTGGACTGCAGGAAAGCCATGGATCTTAGCAGCCCACAAGACAACTCATTAGGATTCTCCTCCACCATCTTCGTCTGCCTGTATTTATTGGTCTTCGTGGCTGGTCTGTTCCTGAACTCCATGGCTATGTGGGTGTTCTTCCAGATCCGCACGCAGAAGCGAACCTTCATGCTGTACCTGCGCAACATGGTGGTGGCTGACCTCCTTATGACTCTCACGCTACCAGTCAACGTGCTTATTGAGGCCAAAGTGGCACCTTTGTGCCTTCAAGTCGTGTCGTGCAAATACACAGCCGTGCTCTTCTACTGCTGCATGTACACCAGCATCCTCTTCCTCGGATTGGTGGCGCTGGATCGCTACTTAAAGATCGTGAGGCCGTTCGGTGGAAAGTGTGGCGCTTGTCTTTACAGTTACTCATTCACTGTAGCCATGGCTGTTATGGTGTGGTTTTCGATGATGGCTCTTTCGCTTCCCAATACaatactgaccaatcagactatACCAGAGAACCTGAATAACTGTGCAGAGCTAAAGAGTAATCTAGGTATAAAATGGCACGGAGTGGTGATCTACATCAACATACTGATCTTCTTCCTAGTCCTGATTACTCTGCTCACCTGCTACTTAGCCATCTACAGACACATCCATCGATCCTCTGCCCAGTTTGTTATAGTCGGAGAGACAACTCCGCATAAGGCCAAGAAAGGGCAGAATATTCTTATCTTACTGGTTGTGTTTTTTATCTGCTTCGTGCCTTATCATTTATGTAGGATCCCATTCACCAAAAGCCAGACTGATGGCGTTCAGATGGATTCTACATTGCTGAATGGGAAAAAAGCAACCCTCTTGATGTCTATGTGCAATGTGTGTCTGGACCCTATCATTTACTTTCTCATGTGCAAGTCTTTTAGAAGCAAGCTATTTCATACACTGGGATTCTGGACAATCAGTGAGAAACTGTCCGTATACTCTTCGACATCTGCAAGGAAAACACCAGTAGTGATGATCTTTAAGGAAAGCCCACCTTGATAAGGAAAATCAGTGCTGTGTGGACATAAAGTTTATATGTAAATTATGGCAGCGGATAAATCTTGCAAATGTATACACTCTCACCAGTAACTTTAAGAGGCTCAGTTaaagaaactggacagttaaagaccagctgatgtttttccaatcttcagttgtccagtttcagtgagcctgtagcctcagattcttgttcttggttaacaggagtggaacacaatgtggtcttctgctgttgaagcccaTCTGTCTCAAATTTCAAtatatgcattctgagatgcttttctgctcgccatGGTTGTGAATAGTGGTTATTTGACATAATGTAGCATTCTGTCAGCTCAAaatagtctggccattctctgacctctcttatgaACAAGtcgtttttgcaccattctgtgtgaactctagagactgttgtgtgtgaaaatcccaggagatcaacggCTTTTAAAATACTACCTAAAACGACCATGCCATGCTCTCTCAGGTCACATttgttttccccattttgatgcttgatgtgaacattatgtGAAGCTCCtcacctgtatctgtatgatttcatgcattatgctgcttctacttgattggctgattagagaattgcatgaatgtgcaggtgtacagatggTCAGTAAGTGTACATAAACTGTGTATATGCCTGTATATATGCTATTTCATATTAGCAGAAATGTATATATTCTGATTATTGGCTTATCACTGTTTACAatggatttttttatattaaaaaataacttaaaGAGTCTAACCACTGTTCTTTGTAGTTTACAATATAAAACCGAAGATTCTACATTTGGGTACATAAAGCTCATCTCTTTTTATATGACTCTGTATGacaaaaattgtttaaatgagCACCATATAATGATAAACTACTGTTGTGAAATCTTGTGGAATGACTATAAAGAATATTCTTTGATTAAAACTACTTTTAACATTG
>XM_026940924.2
TGTAAAGGCTAAAAGAACACAAAGGTTTTGCAGTTTGGAACGATAAGTGAAGAGCCGAGAGACTTGTTGAGGTGAGAACATGACAGCCATGGATCTTAGCAGCCCACAAGACAACTCATTAGGATTCTCCTCCACCATCTTCGTCTGCCTGTATTTATTGGTCTTCGTGGCTGGTCTGTTCCTGAACTCCATGGCTATGTGGGTGTTCTTCCAGATCCGCACGCAGAAGCGAACCTTCATGCTGTACCTGCGCAACATGGTGGTGGCTGACCTCCTTATGACTCTCACGCTACCAGTCAACGTGCTTATTGAGGCCAAAGTGGCACCTTTGTGCCTTCAAGTCGTGTCGTGCAAATACACAGCCGTGCTCTTCTACTGCTGCATGTACACCAGCATCCTCTTCCTCGGATTGGTGGCGCTGGATCGCTACTTAAAGATCGTGAGGCCGTTCGGTGGAAAGTGTGGCGCTTGTCTTTACAGTTACTCATTCACTGTAGCCATGGCTGTTATGGTGTGGTTTTCGATGATGGCTCTTTCGCTTCCCAATACaatactgaccaatcagactatACCAGAGAACCTGAATAACTGTGCAGAGCTAAAGAGTAATCTAGGTATAAAATGGCACGGAGTGGTGATCTACATCAACATACTGATCTTCTTCCTAGTCCTGATTACTCTGCTCACCTGCTACTTAGCCATCTACAGACACATCCATCGATCCTCTGCCCAGTTTGTTATAGTCGGAGAGACAACTCCGCATAAGGCCAAGAAAGGGCAGAATATTCTTATCTTACTGGTTGTGTTTTTTATCTGCTTCGTGCCTTATCATTTATGTAGGATCCCATTCACCAAAAGCCAGACTGATGGCGTTCAGATGGATTCTACATTGCTGAATGGGAAAAAAGCAACCCTCTTGATGTCTATGTGCAATGTGTGTCTGGACCCTATCATTTACTTTCTCATGTGCAAGTCTTTTAGAAGCAAGCTATTTCATACACTGGGATTCTGGACAATCAGTGAGAAACTGTCCGTATACTCTTCGACATCTGCAAGGAAAACACCAGTAGTGATGATCTTTAAGGAAAGCCCACCTTGATAAGGAAAATCAGTGCTGTGTGGACATAAAGTTTATATGTAAATTATGGCAGCGGATAAATCTTGCAAATGTATACACTCTCACCAGTAACTTTAAGAGGCTCAGTTaaagaaactggacagttaaagaccagctgatgtttttccaatcttcagttgtccagtttcagtgagcctgtagcctcagattcttgttcttggttaacaggagtggaacacaatgtggtcttctgctgttgaagcccaTCTGTCTCAAATTTCAAtatatgcattctgagatgcttttctgctcgccatGGTTGTGAATAGTGGTTATTTGACATAATGTAGCATTCTGTCAGCTCAAaatagtctggccattctctgacctctcttatgaACAAGtcgtttttgcaccattctgtgtgaactctagagactgttgtgtgtgaaaatcccaggagatcaacggCTTTTAAAATACTACCTAAAACGACCATGCCATGCTCTCTCAGGTCACATttgttttccccattttgatgcttgatgtgaacattatgtGAAGCTCCtcacctgtatctgtatgatttcatgcattatgctgcttctacttgattggctgattagagaattgcatgaatgtgcaggtgtacagatggTCAGTAAGTGTACATAAACTGTGTATATGCCTGTATATATGCTATTTCATATTAGCAGAAATGTATATATTCTGATTATTGGCTTATCACTGTTTACAatggatttttttatattaaaaaataacttaaaGAGTCTAACCACTGTTCTTTGTAGTTTACAATATAAAACCGAAGATTCTACATTTGGGTACATAAAGCTCATCTCTTTTTATATGACTCTGTATGacaaaaattgtttaaatgagCACCATATAATGATAAACTACTGTTGTGAAATCTTGTGGAATGACTATAAAGAATATTCTTTGATTAAAACTACTTTTAACATTG
>XM_026940925.2
ATGTGTAAAGGCTAAAAGAACACAAAGGTTTTGCAGTTTGGAACGATAAGTGAAGAGCCGAGAGACTTGTTGAGCCATGGATCTTAGCAGCCCACAAGACAACTCATTAGGATTCTCCTCCACCATCTTCGTCTGCCTGTATTTATTGGTCTTCGTGGCTGGTCTGTTCCTGAACTCCATGGCTATGTGGGTGTTCTTCCAGATCCGCACGCAGAAGCGAACCTTCATGCTGTACCTGCGCAACATGGTGGTGGCTGACCTCCTTATGACTCTCACGCTACCAGTCAACGTGCTTATTGAGGCCAAAGTGGCACCTTTGTGCCTTCAAGTCGTGTCGTGCAAATACACAGCCGTGCTCTTCTACTGCTGCATGTACACCAGCATCCTCTTCCTCGGATTGGTGGCGCTGGATCGCTACTTAAAGATCGTGAGGCCGTTCGGTGGAAAGTGTGGCGCTTGTCTTTACAGTTACTCATTCACTGTAGCCATGGCTGTTATGGTGTGGTTTTCGATGATGGCTCTTTCGCTTCCCAATACaatactgaccaatcagactatACCAGAGAACCTGAATAACTGTGCAGAGCTAAAGAGTAATCTAGGTATAAAATGGCACGGAGTGGTGATCTACATCAACATACTGATCTTCTTCCTAGTCCTGATTACTCTGCTCACCTGCTACTTAGCCATCTACAGACACATCCATCGATCCTCTGCCCAGTTTGTTATAGTCGGAGAGACAACTCCGCATAAGGCCAAGAAAGGGCAGAATATTCTTATCTTACTGGTTGTGTTTTTTATCTGCTTCGTGCCTTATCATTTATGTAGGATCCCATTCACCAAAAGCCAGACTGATGGCGTTCAGATGGATTCTACATTGCTGAATGGGAAAAAAGCAACCCTCTTGATGTCTATGTGCAATGTGTGTCTGGACCCTATCATTTACTTTCTCATGTGCAAGTCTTTTAGAAGCAAGCTATTTCATACACTGGGATTCTGGACAATCAGTGAGAAACTGTCCGTATACTCTTCGACATCTGCAAGGAAAACACCAGTAGTGATGATCTTTAAGGAAAGCCCACCTTGATAAGGAAAATCAGTGCTGTGTGGACATAAAGTTTATATGTAAATTATGGCAGCGGATAAATCTTGCAAATGTATACACTCTCACCAGTAACTTTAAGAGGCTCAGTTaaagaaactggacagttaaagaccagctgatgtttttccaatcttcagttgtccagtttcagtgagcctgtagcctcagattcttgttcttggttaacaggagtggaacacaatgtggtcttctgctgttgaagcccaTCTGTCTCAAATTTCAAtatatgcattctgagatgcttttctgctcgccatGGTTGTGAATAGTGGTTATTTGACATAATGTAGCATTCTGTCAGCTCAAaatagtctggccattctctgacctctcttatgaACAAGtcgtttttgcaccattctgtgtgaactctagagactgttgtgtgtgaaaatcccaggagatcaacggCTTTTAAAATACTACCTAAAACGACCATGCCATGCTCTCTCAGGTCACATttgttttccccattttgatgcttgatgtgaacattatgtGAAGCTCCtcacctgtatctgtatgatttcatgcattatgctgcttctacttgattggctgattagagaattgcatgaatgtgcaggtgtacagatggTCAGTAAGTGTACATAAACTGTGTATATGCCTGTATATATGCTATTTCATATTAGCAGAAATGTATATATTCTGATTATTGGCTTATCACTGTTTACAatggatttttttatattaaaaaataacttaaaGAGTCTAACCACTGTTCTTTGTAGTTTACAATATAAAACCGAAGATTCTACATTTGGGTACATAAAGCTCATCTCTTTTTATATGACTCTGTATGacaaaaattgtttaaatgagCACCATATAATGATAAACTACTGTTGTGAAATCTTGTGGAATGACTATAAAGAATATTCTTTGATTAAAACTACTTTTAACATTG
>XM_026940926.2
ctgactgttacaaagtgataacactggaggctcctttcataaatattaaataatagcCTTAAAGAAAACTTAACCATATCAGCgaatatacattttctttgttaaataacaacatttttttatcagtttattgttAGCCTTAGATTACATGGAGCATCTGAACAGTAGTAATGTTTGTAATGGGTTCTCCGAAGGTTAGGCTAGAATGTTACGAAAATATCGTGCTGCGATGTCTTGAAAACGTGACGTAATACCAGTCTGCTTCACAGTCTtaggatgtttttctttcaatgagcctcatttatcaatcttttactaaaaatatgtgtaaatgcttgcataagccaaaccaaactaaacatTTCCAGGAGATATAcaagtttcagaaatgctgattttctttgtactcgtGTGCATATGGTGATGAATGCTAATCACCTGTACATTACCAGGCATGTGtacggcacagctgatttgcatttggtgacgcccacaagactccataaaaggcaaagctcacagagtgAAAGGCAAAAATAGACTTTCTCAGAGGTAGAAGTTAAAGTTATTCTGACTCGTGTCTATGCCAATTAGTACTGGCTAAaataaagtgttgcacagcattaaaagaagttGTGGTGAACAGAACTGACTTACACACCACCTGAGCTTGTCCTCCTTTTACACACTGGCATCCTTAATTGAATGACTgatcttatttgtcttaatttatggatttatgtaGCCTTcctttcttaatatttttttagttaatgccattaatatgaaacaactgGGTCTcacaaaagtttcattaaatttcTTTGTGTATCTAAAGATACACAAGGtgtttaaacttgacagcataatccaTATATCAAAGTGCTGTAACTCTTCATGTTTTATATGAGTTGAAGCAGTCAAGTTTTACATTAGTTAatcttcttatgcataaattcatACACACTTAGGAGCACAAGTAAGATACAAACTTTTTTCCAAAATTaagggattttcatgaataacaaatttcttgtgtaaatgctcctataatttatgaataaatctgttcgtatccagcttgacaAATGAGGACCATTTAGTAAACTGGAAAGGTGTTAACATTCTTACATCTAAAACTGTAGCAGCAATTCTTTGGACATGTTTTtcactgttacagaaaacatttgcaAGAATCAAAGAAACTCCTGTAGGGAGAGGCTGGGTTTAGcctaattattatattattattatcaatttattgttttaatggtaacatgtttttcacaaaaacagATTACATGCCATATTGTCCCATTGTTAATATAATTACGATTTCATAATAGAATTAGATTCCTTCCAGTGTAAGTtataaaaaaatccattcaCTTGATAATCAGATAGGGCTGATACTGATTTCCGAGGAAAGCAATGAACTCACACAGCAAGCCCAAACACATCAGAAGTGGAGATGGATTTCAACACTccattcagtaataaaatatgGGGCAGAGTTCCTTCACTGCTTCCTGCCTTCATCTGAACACAAAGCACATAGCAGGACAGTAGGACAGAGTTGAGCGCAGTGATCCAGCCATGGATCTTAGCAGCCCACAAGACAACTCATTAGGATTCTCCTCCACCATCTTCGTCTGCCTGTATTTATTGGTCTTCGTGGCTGGTCTGTTCCTGAACTCCATGGCTATGTGGGTGTTCTTCCAGATCCGCACGCAGAAGCGAACCTTCATGCTGTACCTGCGCAACATGGTGGTGGCTGACCTCCTTATGACTCTCACGCTACCAGTCAACGTGCTTATTGAGGCCAAAGTGGCACCTTTGTGCCTTCAAGTCGTGTCGTGCAAATACACAGCCGTGCTCTTCTACTGCTGCATGTACACCAGCATCCTCTTCCTCGGATTGGTGGCGCTGGATCGCTACTTAAAGATCGTGAGGCCGTTCGGTGGAAAGTGTGGCGCTTGTCTTTACAGTTACTCATTCACTGTAGCCATGGCTGTTATGGTGTGGTTTTCGATGATGGCTCTTTCGCTTCCCAATACaatactgaccaatcagactatACCAGAGAACCTGAATAACTGTGCAGAGCTAAAGAGTAATCTAGGTATAAAATGGCACGGAGTGGTGATCTACATCAACATACTGATCTTCTTCCTAGTCCTGATTACTCTGCTCACCTGCTACTTAGCCATCTACAGACACATCCATCGATCCTCTGCCCAGTTTGTTATAGTCGGAGAGACAACTCCGCATAAGGCCAAGAAAGGGCAGAATATTCTTATCTTACTGGTTGTGTTTTTTATCTGCTTCGTGCCTTATCATTTATGTAGGATCCCATTCACCAAAAGCCAGACTGATGGCGTTCAGATGGATTCTACATTGCTGAATGGGAAAAAAGCAACCCTCTTGATGTCTATGTGCAATGTGTGTCTGGACCCTATCATTTACTTTCTCATGTGCAAGTCTTTTAGAAGCAAGCTATTTCATACACTGGGATTCTGGACAATCAGTGAGAAACTGTCCGTATACTCTTCGACATCTGCAAGGAAAACACCAGTAGTGATGATCTTTAAGGAAAGCCCACCTTGATAAGGAAAATCAGTGCTGTGTGGACATAAAGTTTATATGTAAATTATGGCAGCGGATAAATCTTGCAAATGTATACACTCTCACCAGTAACTTTAAGAGGCTCAGTTaaagaaactggacagttaaagaccagctgatgtttttccaatcttcagttgtccagtttcagtgagcctgtagcctcagattcttgttcttggttaacaggagtggaacacaatgtggtcttctgctgttgaagcccaTCTGTCTCAAATTTCAAtatatgcattctgagatgcttttctgctcgccatGGTTGTGAATAGTGGTTATTTGACATAATGTAGCATTCTGTCAGCTCAAaatagtctggccattctctgacctctcttatgaACAAGtcgtttttgcaccattctgtgtgaactctagagactgttgtgtgtgaaaatcccaggagatcaacggCTTTTAAAATACTACCTAAAACGACCATGCCATGCTCTCTCAGGTCACATttgttttccccattttgatgcttgatgtgaacattatgtGAAGCTCCtcacctgtatctgtatgatttcatgcattatgctgcttctacttgattggctgattagagaattgcatgaatgtgcaggtgtacagatggTCAGTAAGTGTACATAAACTGTGTATATGCCTGTATATATGCTATTTCATATTAGCAGAAATGTATATATTCTGATTATTGGCTTATCACTGTTTACAatggatttttttatattaaaaaataacttaaaGAGTCTAACCACTGTTCTTTGTAGTTTACAATATAAAACCGAAGATTCTACATTTGGGTACATAAAGCTCATCTCTTTTTATATGACTCTGTATGacaaaaattgtttaaatgagCACCATATAATGATAAACTACTGTTGTGAAATCTTGTGGAATGACTATAAAGAATATTCTTTGATTAAAACTACTTTTAACATTG

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0007166 cell surface receptor signaling pathway biological_process

KEGG:

id description
K08389 GPR87; G protein-coupled receptor 87

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940923.2 False 2321 mRNA 0.40 2 4286801 4290110
XM_026940924.2 False 2066 mRNA 0.41 2 4283170 4290110
XM_026940925.2 False 2054 mRNA 0.41 2 4283167 4290110
XM_026940926.2 True 3574 mRNA 0.38 2 4285191 4290110

Neighbor

gene id symbol gene type direction distance location
LOC113543038 LOC108280160,LOC108424050 coding upstream 6209 4267090 ~ 4276958 (+)
LOC113543045 LOC108280189 coding upstream 19881 4258365 ~ 4263286 (+)
p2ry12 LOC108280198 coding upstream 26333 4251870 ~ 4256834 (+)
igsf10 igsf10 coding upstream 44461 4225498 ~ 4238706 (+)
LOC113543359 LOC108280252 coding upstream 99738 4174793 ~ 4183429 (+)
wdr53 wdr53 coding downstream 10689 4300799 ~ 4308052 (+)
LOC113543315 LOC108280769,LOC108423999 coding downstream 25633 4315743 ~ 4350544 (+)
cux1b cux1,LOC106581515,LOC105006988 coding downstream 86884 4376994 ~ 4533974 (+)
LOC113543006 sh2b2,LOC107573094 coding downstream 256025 4546135 ~ 4576648 (+)
bud23 wbscr22 coding downstream 292917 4583027 ~ 4590956 (+)
G314222 NA non-coding upstream 282853 3996502 ~ 4000314 (+)
LOC117599982 NA non-coding upstream 387482 3888027 ~ 3895685 (+)
G313990 NA non-coding upstream 437072 3845857 ~ 3846095 (+)
G313949 NA non-coding upstream 463258 3773070 ~ 3819909 (+)
G314362 LOC108280893 non-coding downstream 144 4290254 ~ 4293729 (+)
G314364 NA non-coding downstream 4755 4294865 ~ 4295074 (+)
G314402 NA non-coding downstream 89527 4379637 ~ 4384865 (+)
G314404 NA non-coding downstream 227491 4517601 ~ 4527820 (+)
G314609 NA non-coding downstream 489828 4779938 ~ 4780145 (+)
LOC113543208 LOC108280571,LOC108435486 other upstream 793800 3423567 ~ 3489367 (+)
trnat-agu_12 NA other upstream 1393779 2889315 ~ 2889388 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other upstream 1607319 2675281 ~ 2675848 (+)
LOC117599997 LOC108280771,LOC108435500 other upstream 1620768 2655200 ~ 2662399 (+)
G313112 zswim5 other upstream 2097490 2181979 ~ 2185677 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other downstream 302330 4592440 ~ 4762095 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other downstream 497738 4787848 ~ 4789835 (+)
LOC113543089 mbp other downstream 611360 4901470 ~ 4958121 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other downstream 797729 5087839 ~ 5091273 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other downstream 910911 5201021 ~ 5216591 (+)

Expression


Co-expression Network