tmem70 (tmem70)


Basic Information

Item Value
gene id tmem70
gene name tmem70
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 898058 ~ 901624 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940929.2
TGCTGAAGTACTTCCGGGTTTTACATGGCGGCTCTGCAGTAATCCGAATAGGTTGGATAACATTAAATTGCTGGAAATGTTCCATTTAAACGCTTTACCGAGGTTTAGATCGATCTCGAGAAATCAGCAGATATTAAGACACATCCATCGAGGCAGTGTTTATTTCCTGAGCAGCTCTCAGACAACATGCACAACTTCTGCTCTGAGCTACAGCCATCATTTAGTGCAGTCACTGCAGAGGACATCCTCCACATCCCAGATCAATAagATTCGAGCCTGCGCGTATGGACGATGTTATTCCTCACGGCCGGGCAGCACCGAGGACGGAGTTCTGATCTACACGGGCAATCTGGGCAAGGCCGTGCTCGGTGTGAAGTTTTTCTCGTACTCCAGCAGCATGTTCAGTTTGTGCATGATGCCCCTCATCCTCACGAAGACGGGCATCGGGGTGAGCAGCTTTGCGATGAAGGCTGCGTTCTGCGGTTTTATCGGCTTCTTCACGTTCCTGACGCCGGTCCTCCTCCACCTCATCACCAAAGGCTACGTGGTGCGCTTGTATCACAACAAGGAGACGGACGTGTACACGGCCGTCACGTACAGCGCGCTGCTGGTGGAGAAGAAGACCGTGTTTCACCAGAGTGACGTCAAAGTCCCGGACGTGAGCCGCATGTTCACGAGTTTCTACGCCAAGAAGCGTTCGATGCTCGTAAACCCGATGCTGTTCGACGTGCCACACGACTACAATCACCTCATGGGCTACGATCAGCCTTTCTCCTTCGACCCGGAGGACATAAATAAACCTGATCAAAATTAGCCGCTGTCActcttcattttaaaactttatgaAAAGGacttgaaaatgtaaaaaagtacaAATTGCTTCGTTTATCTGGTAAAACTTGGTATAtctataatattgtataatattttaaacattagcacattattaaaaaaaaaaatccttgataGAAGTGAgttttgtcctccatgttgttCACTCTGAAAGCTAAGAAGGACAATGCTCCTtcaaatttgtccaaaataatCATCTTTAGACCTCAACTGTTTTTAcaataatgttatattaaattaaaatagattttacgCCGTC
>XM_034314625.1
TATTTCCTGAGCAGCTCTCAGACAACATGCACAACTTCTGCTCTGAGCTACAGCCATCATTTAGTGCAGTCACTGCAGAGGACATCCTCCACATCCCAGATCAATAagACAAGTGAGAAATCCTACTGTAGAGTAGACTGGATTACGTTACTTCCTGCATATGACTCGGATCTTCTCCACTTCTCCGCTGCATGTGTTTTATAATCATCAGATTAGCTAAATACCAGATTCGAGCCTGCGCGTATGGACGATGTTATTCCTCACGGCCGGGCAGCACCGAGGACGGAGTTCTGATCTACACGGGCAATCTGGGCAAGGCCGTGCTCGGTGTGAAGTTTTTCTCGTACTCCAGCAGCATGTTCAGTTTGTGCATGATGCCCCTCATCCTCACGAAGACGGGCATCGGGGTGAGCAGCTTTGCGATGAAGGCTGCGTTCTGCGGTTTTATCGGCTTCTTCACGTTCCTGACGCCGGTCCTCCTCCACCTCATCACCAAAGGCTACGTGGTGCGCTTGTATCACAACAAGGAGACGGACGTGTACACGGCCGTCACGTACAGCGCGCTGCTGGTGGAGAAGAAGACCGTGTTTCACCAGAGTGACGTCAAAGTCCCGGACGTGAGCCGCATGTTCACGAGTTTCTACGCCAAGAAGCGTTCGATGCTCGTAAACCCGATGCTGTTCGACGTGCCACACGACTACAATCACCTCATGGGCTACGATCAGCCTTTCTCCTTCGACCCGGAGGACATAAATAAACCTGATCAAAATTAGCCGCTGTCActcttcattttaaaactttatgaAAAGGacttgaaaatgtaaaaaagtacaAATTGCTTCGTTTATCTGGTAAAACTTGGTATAtctataatattgtataatattttaaacattagcacattattaaaaaaaaaaatccttgataGAAGTGAgttttgtcctccatgttgttCACTCTGAAAGCTAAGAAGGACAATGCTCCTtcaaatttgtccaaaataatCATCTTTAGACCTCAACTGTTTTTAcaataatgttatattaaattaaaatagattttacgCCGTC

Function

symbol description
tmem70 Predicted to be involved in mitochondrial proton-transporting ATP synthase complex assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial membrane. Human ortholog(s) of this gene implicated in mitochondrial complex V (ATP synthase) deficiency nuclear type 2. Orthologous to human TMEM70 (transmembrane protein 70).

NR:

description
transmembrane protein 70, mitochondrial-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17966 TMEM70; transmembrane protein 70, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940929.2 True 1111 mRNA 0.45 3 898058 901624
XM_034314625.1 False 1070 mRNA 0.45 4 898218 901624

Neighbor

gene id symbol gene type direction distance location
rdh10b rdh10b,LOC108280502,LOC108435720,LOC107550714,LOC107664055 coding upstream 24292 868721 ~ 873766 (+)
cbln2a cbln2a,cbln2,LOC108280218,LOC107586364,LOC107550708,LOC107686082,LOC107664049 coding upstream 170193 723451 ~ 727865 (+)
LOC113543348 gpr83 coding upstream 203720 683806 ~ 694338 (+)
mre11a mre11a coding upstream 220276 616718 ~ 677782 (+)
LOC113543345 LOC108280375,LOC108280376 coding upstream 336921 545670 ~ 561137 (+)
trpa1a LOC108280835,LOC108435699 coding downstream 45168 946792 ~ 965617 (+)
shhb LOC108280234 coding downstream 102285 1003909 ~ 1012192 (+)
cnpy1 cnpy1,LOC108435706 coding downstream 152244 1053868 ~ 1066467 (+)
cahz cahz coding downstream 449639 1351263 ~ 1357482 (+)
cdh6 LOC108280858,LOC108432255,LOC107678945,LOC107667294,LOC107567409 coding downstream 986126 1887750 ~ 1935629 (+)
G312534 NA non-coding upstream 11944 883404 ~ 886114 (+)
G312531 NA non-coding upstream 22178 875663 ~ 875880 (+)
G312509 rpl7,LOC107664057,LOC107584398 non-coding upstream 31337 862387 ~ 866721 (+)
G312517 NA non-coding upstream 75312 821262 ~ 822746 (+)
G312277 NA non-coding upstream 138730 715639 ~ 759328 (+)
G312540 NA non-coding downstream 4610 906234 ~ 906446 (+)
LOC117599981 NA non-coding downstream 74997 976621 ~ 980051 (+)
LOC117599954 NA non-coding downstream 188234 1089858 ~ 1104324 (+)
LOC117599969 NA non-coding downstream 461752 1363376 ~ 1370691 (+)
G312877 NA non-coding downstream 620677 1522301 ~ 1522511 (+)
jph1b jph1b,jph1,LOC108280498,LOC107550709,LOC108435725,LOC107584332,LOC107746914,LOC107686034,LOC107664083,LOC107732545 other upstream 51041 820530 ~ 847017 (+)
LOC113543349 iws1 other upstream 180767 704778 ~ 717291 (+)
atpv0e2 LOC108280382,LOC100691746,LOC107588449,LOC107551367,LOC107706116 other upstream 396669 413619 ~ 501389 (+)
snap91a snap91,LOC108280370 other upstream 579096 274822 ~ 318962 (+)
pnrc2 pnrc2 other upstream 704524 189539 ~ 193534 (+)
paxip1 paxip1,LOC106569237,LOC107550719 other downstream 227285 1128909 ~ 1147376 (+)
c21h5orf22 c20h5orf22,LOC107714825 other downstream 1064116 1965740 ~ 1977309 (+)
tgs1 tgs1 other downstream 1231526 2133150 ~ 2145237 (+)
G313112 zswim5 other downstream 1280355 2181979 ~ 2185677 (+)
LOC117599997 LOC108280771,LOC108435500 other downstream 1753576 2655200 ~ 2662399 (+)

Expression


Co-expression Network