wdr53 (wdr53)


Basic Information

Item Value
gene id wdr53
gene name wdr53
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 4300799 ~ 4308052 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940950.2
CGCCCGCTGTTGGCGTTTGCGTCATCAATACGCGACGTCTCCATATTCCCAGCACGTGCGCAGGAAGCAGCAattattgtgtttatgtttCAGGCGAAAGATTAAAAGCCTTATTGGATTGATACATCCATTGTTGTCAGGTCAGTAAGCAGCATGGCACAGCACTGGGCTGGAGGCCACACTGCTCCGGTGCTGTGCATCGGAGCCGCAGCAGGAGCTGACGGATTTCTGGCCTCGGGGGCTGAAGGAGGCGAGGTGACGGTCTGGACTCAGGAAGGGACTCCTCTCTCTCGGCTGCGTTTGAGCTCTCAGGACGACGTCACGTGTACGGTTTTCTCCGGCACTGCGCCGGGGCTGTTGTACGTGTCTCATGGTGAGACGGTGAGCATCCTGGACCCACGCAGTCTGAAGAAGCCGGTGGAGGAACTCAAGGACGTCGGCGAGGACGAGATCAACTCGCTTTCAGTGAGCGAAACGGGTGCCTCACTGGCACTGGCCGACGATTCGGGGACTGTGAGGGTGGTGGACCTCCAGACGGGAAAAGTGAGCCGCACGCTGCGCAAACACACCAATATCTGCTCTTCCGTGGCTTTTAGACCCCAGAGGCCACAGAGCCTTGTGTCTGCAGGGCTGGACATGCAGGTGATGCTGTGGAACCTGCAGAAAGCTCGGCCAGTGTGGATCTACAGCCTACAGGAGGCgctggaggaggaagagagatcCCAGCAACAAGCAAGTCAGCTCTTTAACCCGCCTCTGGCTCACTGCGTCAGTGTTGCATCATGTGGAAACGTTTTGGCGTGTGCTGCAGAAGACGGACACGTGCACCTCGCCCGCGTGGGTGCTGGCTCCAGACTCGAGCAGCAGGGGGTGATAAAGGCTCACAGTCAGGGTGCCTCTCAGGCCCACTTCCTCAACTTCATGCCCCATCCTTACTGGCTGGCCACCGGAGGCAATGACGGAGTAGTGGCATTGTGGGATATAAGCGAGGAGACTGTTGTGGCAGGAGAGGTCAAGGTCAAGGTCCAACGCAGGAAAcccaaaaacaggaagtcaaagCCTCAGAGTCATGAGGTtgaagagggaaagagaagagaagaagagctTTCAGAGGAAGCCAGAAGTATTGACCCGAGTCAGACAAAGACGGCATTAAAATTGAAGTTCAGTCACGAGGAGAAGGTGAACTGGATTTGTCCGGCACTTCTAAAAGGACAACCGAGTTTACTCGTTGCAGATCAGAGCACCAGTTTATCTTTGTATTCTCTGTCAGGGCTTTAGCAGCATTTCTCCAACAGTGTGGGAAAGCACAGAACTGTgttcagctttatttatttgcctCGTGGTTAAACAATGGGCGCTTGTAAAATACAGAACAAGTCCAGCCTGACTGAATCAGCCTGAAGCGATGTGTTTCTGTCTGCTTATcctttttttccagtgtgtgtggttgtgcaCTCAAGCTACAGGGCCCATTTTTCATAAATCACCTAACAAATCCAACCTGAGATGACATGCTAGATTACTAATCATTATAATTCTATGTGCTAAATGTGCTAATTTGTTTTTTCAGACCTGTTTGAGGGTTGGATTAGTGTAGTCATATTGAGATAACTGCGTAATCCTGCGTTGCCAGGAAAGGGCGGATATAACGAGAATTTAAACCATGGTCAAGGAGTCagtcataaatcataaatcataatacACACaactaggggtgtaatgataaaTCGTGACAGTGCTTCGCAATGCCAAGATGTGCCGAGCATCATAGAAATGTGTGATTCACTTTGTGGAAATCAgtgcagttgcactgtttgtaCAGCAGAGGTCCCAGTCTGCACATCCCACAGAGTTATACAgagttaaatatataaagtgcATGCTGGTCATGTGACAGTGTCCTTTTGTGGAGAGCCTGTGagatctgcacttgtgaagtctGCCAGCTCTGGATTGCCACGACCAACATACGTTATACATTACATGGCCATGTTACaacagttaaaaagagctcttcagtagcttcaAACAACACCAAAGGCCATGGAAAATGgtcattttagccgactttggagctctttTTCTGCTGCAGAGCtcagacactttgtttattcaatcacaGTTTTGaggagaatttatttatttaaaagatattGTGAACTTGTagtacatatatacaatattaaacTTCTGTTTGtagcagtttattttatttatttagttttaggCAGACAAAAATGCATTGTTTTACATTGTGTAtggttcagaaataaaaaaaaggagtctGTTCTgtcaatttttcttcatttaaaatttgttcaaaatattctgagaatcgaatTGAAATCGTGGAGGCAGTGTGGTGAATAGAATCGAAATGTGACTGGAGTGTATCATTACACCTGTACACGCAACATTCGGCTGCTTCATTCATGCTCAGTGGTGCCAACGTTTTGGTTTATTGTTGCACTTGTCTAACGAAAATGAGCACAGTTTAAATAGATGTAGTTAAaactccattttaaaaaaacccaTACACAATGGGGTGgctcttacaggaaaataatcaatgatggagaagtagaattactgttaccaacctgaagttgattaatttttccccctgaagtgttttattcttcttataccacaactGGCAATTAGCCAAGGATtagaaattgtatttattaatgaaagaacgatatatcatacatttttatccatttatggttacatttaatgttgtggaatgtccatgaaaaattagctctgttatcacttacgttaataaggcaaaaaatgcTGACTGGACTAAGAAACCAGATGTGTTTATTACTTGTCTTGGAGTAGGTGGTACATCTACAGTAAAcgtaaaagaaacaaaaacggattagaatgagcgcattaatataaaccagtgatttgACTTTTGAATCACCACCTGACTAATTCATttcgagaattcagcaacactgtgctataaattaaaaaaaagcctgctcCCGAGCACGTTTGAACTTGCAAAGAATTGTACAGACTTGCCTTGGCAAATGAAATGGTCAACAATCCAATCCAGCTAATCCACGTATGAAGAACAGGGCCCTGGCCCTCTGTAAATCTGATTCAGTTTGAAAGCACTGGATTTCTGcatgatgaatggatggattaatCTGTCTGAGTGTGCACTGaattatattcattttgttCTGAAGTGTCTTGAGAGAAGTTGTTTTCCTTCTATTACAGGACTTTTACAGTAACATCATGAAGTAAGACAGTGTTTGTCTAGAGAGTTGGGAGGGAATGATTTAAACGGAAGAGGAGCAATGAATCCTCGACCGTAACACTAACAATGACGAACCCTGATTTGTACTTCATACATCAGCACATCTAAGAAAAGGTGTTTAAATCTAAAATAACAGGGAAAGAACAGGATATAACAAAGCTTAGGGAAAAGAGTACACAACACAGATGAAAAGCTAAA

Function

symbol description
wdr53 Orthologous to human WDR53 (WD repeat domain 53).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K24748 WDR53; WD repeat-containing protein 53

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940950.2 True 3487 mRNA 0.44 3 4300799 4308052

Neighbor

gene id symbol gene type direction distance location
LOC113543011 LOC108280892 coding upstream 10689 4283167 ~ 4290110 (+)
LOC113543038 LOC108280160,LOC108424050 coding upstream 23841 4267090 ~ 4276958 (+)
LOC113543045 LOC108280189 coding upstream 37513 4258365 ~ 4263286 (+)
p2ry12 LOC108280198 coding upstream 43965 4251870 ~ 4256834 (+)
igsf10 igsf10 coding upstream 62093 4225498 ~ 4238706 (+)
LOC113543315 LOC108280769,LOC108423999 coding downstream 7691 4315743 ~ 4350544 (+)
cux1b cux1,LOC106581515,LOC105006988 coding downstream 68942 4376994 ~ 4533974 (+)
LOC113543006 sh2b2,LOC107573094 coding downstream 238083 4546135 ~ 4576648 (+)
bud23 wbscr22 coding downstream 274975 4583027 ~ 4590956 (+)
LOC113543019 zadh2 coding downstream 724197 5032249 ~ 5036445 (+)
G314364 NA non-coding upstream 5725 4294865 ~ 4295074 (+)
G314362 LOC108280893 non-coding upstream 7070 4290254 ~ 4293729 (+)
G314222 NA non-coding upstream 300485 3996502 ~ 4000314 (+)
LOC117599982 NA non-coding upstream 405114 3888027 ~ 3895685 (+)
G313990 NA non-coding upstream 454704 3845857 ~ 3846095 (+)
G314402 NA non-coding downstream 71585 4379637 ~ 4384865 (+)
G314404 NA non-coding downstream 209549 4517601 ~ 4527820 (+)
G314609 NA non-coding downstream 471886 4779938 ~ 4780145 (+)
G314628 NA non-coding downstream 492600 4800652 ~ 4801103 (+)
G314636 NA non-coding downstream 538140 4846192 ~ 4846717 (+)
LOC113543208 LOC108280571,LOC108435486 other upstream 811432 3423567 ~ 3489367 (+)
trnat-agu_12 NA other upstream 1411411 2889315 ~ 2889388 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other upstream 1624951 2675281 ~ 2675848 (+)
LOC117599997 LOC108280771,LOC108435500 other upstream 1638400 2655200 ~ 2662399 (+)
G313112 zswim5 other upstream 2115122 2181979 ~ 2185677 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other downstream 284388 4592440 ~ 4762095 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other downstream 479796 4787848 ~ 4789835 (+)
LOC113543089 mbp other downstream 593418 4901470 ~ 4958121 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other downstream 779787 5087839 ~ 5091273 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other downstream 892969 5201021 ~ 5216591 (+)

Expression


Co-expression Network