LOC113543038 (LOC108280160,LOC108424050)


Basic Information

Item Value
gene id LOC113543038
gene name LOC108280160,LOC108424050
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 4267090 ~ 4276958 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940970.2
gtgtgcatgtgtgtgcatgcatatgcAGGCCACAAGCACAGAGCAATAGGCAAAGTGAATGGGAAGTCTCAGGCATTTGCTGATTTTCATATAGCATTGTCAGTTgggaaaaaacagaagaatttCACTTCTCCTAACGCTGTCATAGCTGGGACGTGAGGATGAATATGAGTCAGCAGAACTCCTCCATGCAATGCAAGCTAGACACCAGGATCACCTCGGTCCTCTTCCCCTGCTTGTATTCTGCCCTCTTCCTGGCTGCCATCGTCCTCAACTGCTTGGCTGCCTGGATCTTCTTCCAGATCCACAGCAGCTCCACATTTGTGGTGTACCTGAAGAATGTGGTGGTGGCCGACCTGCTCATGACTCTGACTGTTCCTTTGAAGGTACTGACGGACGCGGGCATAGGCTCAGCCACACTGAGGGCCTTCTACTGCCGCTACACGGGCGTGCTCTTCTACACCACCATGTACATCAGCATCCTGCTGCTGGGTCTCATCAGCCTGGACCGCTACCTGAAAATCGTGCGGCCCTTCGGAAAGTGCGCCCTACAGCGGGTCAGTGTGGGTAAGGCAGTGTGCGCAGGGGTCTGGGCTGTCATGGTGGCTTTTGCGCTGCCTAATGTGATCCTGAGTGACCGTGAGCTTCCTGTGGGTCGCAGCGGGAAGCTGAAATGCAGCAGCATGAAGAGTGATCTGGGCCTGCGCTGGCATGAGGGCTTTAACTACTTTTGCCAGGTGGTGTTCTGGGGGACGCTGGGTTTAATGGCCATCTGCTACACCTTCATCAGCAGGAAGGTATACGAGTCGTACCGCACCTCACGGAGCAGCTCCGGCACCGCCAGCAAACGCACCAAGTCCAAGGTGTTTGTCGTGGTGGGCGTGTTCTTTGTATGTTTCGCTCCCTTCCACTTGGCCCGAGTGCCCTACACCCTCACTCAAACACGAGGCACATCCGCACATTGCTGGTCTCAGAAGCAGCTCTACTTGGCAAAGGAAATCACACTCTGGCTGTCAGCCACCAACATTTGTCTGGATCCTCTCATTTATGTCTTCCTGTGCCGAGTCTTCCGCAGGAAATTAACTGCTACGCTCTGCCGCAAGCCTTTGGCCAGTGGAGGGCTCGAGTCCCCTACAGAGACCTCGACCAAGCAGGAGATGTCTCACATGGGTCATTATAACAAGGCTAATGAGTTCCACTCACATTAGCATCATCATAAACATGGAAGTCTGGTCACAATACACTGGTCTGGATTAAAATAATGGAGTTGACTGGATTGAATAACATTATCCCTGAACTTCGATTCATCACAGAGgaattttataaaatgatatttttactgtatataactgaAGCTTGTTGAAATGCCTGTTTGCCACCATGAGCTGATTTCtttcatcatttatcaaaacACAATACACCACTTTTACTCTTTTGATATGCTTTACTCAAGAATACTATTTTTCAGTGATTTAGATTCTACTTGATGATGAAACCGTGTGTACTGATGTGCGTCATGTATATTTGTATTCCTGATTTCTATAAGTATTAGAGATGGCTCATTCCTTGCATGTGGTTCCTTTAAGGTTTTAATGCCATTATGGTGTATGCACTTCAACTGAATATCACAGTTTCATATCTGTGGTGGTCtaggaaaacccatcagatgtctctgtggctgaattctgacaaacagccaaaaagaatgaaaaaaaaaaaagaccaaaattgttttttctgcctataacctATTTTGTCACTTCAACTTTAAATACCTTTAAATACAACTAGAAACCATAAATACActtcaaatacacaaacagaaatgcttttatgtacttttttaaacTGCTCATTTCCTGTGAAGATCATGTGGTATAAAGAGCGAGTTCAACAAATGCTGTGTTTACAAACCaccagtctgcctaaagatgtgtAAAACCTCACTAGCACTGTGTGATTTGTCACGCAATGAATGTCAGATATCAAATACCCTCAGAATGTCTGTTATGCACCTGCGTCACAGtagaaatgaaattatttaaattctccctttttcacttttgggggtaaccagatgtataaatatacagtagattagaaattacaaagaaaaacacatttcaatacagtaaaagtctgtagttttcagaaatatatagtAGGAAATGTCATCATTTCAGCAtgtaaagggttttcccaggccgccacacacatgttcatgctaattttatatttacatgttatgtgtatatatatgcttTACTCTGTCTGTGTCAGCAGATTAATTTATTGGTCGTTACTGATCTCACATACTGGCAAATGACTAAAATTCTGTGTTTCTTTGCCTAGAAATATGGAATAAGTGAATAGATTGATGTCATATTTAATAACCTCACACTGGCATcatgtaaaagaaaaggaatttTTAGACCTAATCAACTTATGAAGTTGAAATTTCCACCAAAATGTGATGTCTATTCATGAAAATGATATCAAAGTAGCTTGTCTCTAAGCAAATATACATTAATTACAATGAAATGGTTTCCTTCAGGGACAGAAAAGACTCATGATATATAGGAATTTCTATTTGGTCTTGCAGTATAagctataaatatttttcttccatATTTTTAATGGCCTAAAGTGAATATAACTAAATGATCAGGACTAGtgagtgttaatgagtgtaAAGTCAGgataatattatttaaaggGTCACAGCAAAACATTGTCCTAGTGAGCCCTATTAACTCAGTCCTTTAGGTACTTTAtagattttttcatttctgtcatttcaAGTGCAAAAATTAGCCTAAGTAGCAATTCCTTTTTCAATGTGTCATCTGTTTTTTAGCAGCTTAACCCATGTTGGgactttccttctttttaatctaaactcagcattttttttgtttgtttgtttgtttgattccTCCTAGCAGTAATTTCTTTTGCTGCTTTAAAGACTGATATTATAACagatattaaatttaaaatgtaatttatttaatgtataataTGTTAACAGTGATGTTTTACTGTCCCAAATTCTCTAAGAGTACAGCTGCCATTTCTGGTCCAAgcttatttgtaataataaaaatacagacatttatataagatttcttcctttttttaaatgtcttggGTACTTCTGtatacacctttttttttgtttttttcacttcaaATTTTGTGTCCACCTGATTTCTTTCAAGCCCTTGAATTTCAGTTTTGAAATTAGGatagcactttattttatagTAACTACAGTATTTAATGAGTAgatatgtaataattaaaagtgATGTCTTGTACGTACTTTACATGTTGAATAAAGTTGGAAAATAA
>XM_026940971.2
CTGCAAGCTTACCAAAATGCCTCACCAGGACTGTGTCCCATCACCTGCAGATTCTTAACCATCTTCTTCTACCTGGCCATAAAGTCATAGCTGGGACGTGAGGATGAATATGAGTCAGCAGAACTCCTCCATGCAATGCAAGCTAGACACCAGGATCACCTCGGTCCTCTTCCCCTGCTTGTATTCTGCCCTCTTCCTGGCTGCCATCGTCCTCAACTGCTTGGCTGCCTGGATCTTCTTCCAGATCCACAGCAGCTCCACATTTGTGGTGTACCTGAAGAATGTGGTGGTGGCCGACCTGCTCATGACTCTGACTGTTCCTTTGAAGGTACTGACGGACGCGGGCATAGGCTCAGCCACACTGAGGGCCTTCTACTGCCGCTACACGGGCGTGCTCTTCTACACCACCATGTACATCAGCATCCTGCTGCTGGGTCTCATCAGCCTGGACCGCTACCTGAAAATCGTGCGGCCCTTCGGAAAGTGCGCCCTACAGCGGGTCAGTGTGGGTAAGGCAGTGTGCGCAGGGGTCTGGGCTGTCATGGTGGCTTTTGCGCTGCCTAATGTGATCCTGAGTGACCGTGAGCTTCCTGTGGGTCGCAGCGGGAAGCTGAAATGCAGCAGCATGAAGAGTGATCTGGGCCTGCGCTGGCATGAGGGCTTTAACTACTTTTGCCAGGTGGTGTTCTGGGGGACGCTGGGTTTAATGGCCATCTGCTACACCTTCATCAGCAGGAAGGTATACGAGTCGTACCGCACCTCACGGAGCAGCTCCGGCACCGCCAGCAAACGCACCAAGTCCAAGGTGTTTGTCGTGGTGGGCGTGTTCTTTGTATGTTTCGCTCCCTTCCACTTGGCCCGAGTGCCCTACACCCTCACTCAAACACGAGGCACATCCGCACATTGCTGGTCTCAGAAGCAGCTCTACTTGGCAAAGGAAATCACACTCTGGCTGTCAGCCACCAACATTTGTCTGGATCCTCTCATTTATGTCTTCCTGTGCCGAGTCTTCCGCAGGAAATTAACTGCTACGCTCTGCCGCAAGCCTTTGGCCAGTGGAGGGCTCGAGTCCCCTACAGAGACCTCGACCAAGCAGGAGATGTCTCACATGGGTCATTATAACAAGGCTAATGAGTTCCACTCACATTAGCATCATCATAAACATGGAAGTCTGGTCACAATACACTGGTCTGGATTAAAATAATGGAGTTGACTGGATTGAATAACATTATCCCTGAACTTCGATTCATCACAGAGgaattttataaaatgatatttttactgtatataactgaAGCTTGTTGAAATGCCTGTTTGCCACCATGAGCTGATTTCtttcatcatttatcaaaacACAATACACCACTTTTACTCTTTTGATATGCTTTACTCAAGAATACTATTTTTCAGTGATTTAGATTCTACTTGATGATGAAACCGTGTGTACTGATGTGCGTCATGTATATTTGTATTCCTGATTTCTATAAGTATTAGAGATGGCTCATTCCTTGCATGTGGTTCCTTTAAGGTTTTAATGCCATTATGGTGTATGCACTTCAACTGAATATCACAGTTTCATATCTGTGGTGGTCtaggaaaacccatcagatgtctctgtggctgaattctgacaaacagccaaaaagaatgaaaaaaaaaaaagaccaaaattgttttttctgcctataacctATTTTGTCACTTCAACTTTAAATACCTTTAAATACAACTAGAAACCATAAATACActtcaaatacacaaacagaaatgcttttatgtacttttttaaacTGCTCATTTCCTGTGAAGATCATGTGGTATAAAGAGCGAGTTCAACAAATGCTGTGTTTACAAACCaccagtctgcctaaagatgtgtAAAACCTCACTAGCACTGTGTGATTTGTCACGCAATGAATGTCAGATATCAAATACCCTCAGAATGTCTGTTATGCACCTGCGTCACAGtagaaatgaaattatttaaattctccctttttcacttttgggggtaaccagatgtataaatatacagtagattagaaattacaaagaaaaacacatttcaatacagtaaaagtctgtagttttcagaaatatatagtAGGAAATGTCATCATTTCAGCAtgtaaagggttttcccaggccgccacacacatgttcatgctaattttatatttacatgttatgtgtatatatatgcttTACTCTGTCTGTGTCAGCAGATTAATTTATTGGTCGTTACTGATCTCACATACTGGCAAATGACTAAAATTCTGTGTTTCTTTGCCTAGAAATATGGAATAAGTGAATAGATTGATGTCATATTTAATAACCTCACACTGGCATcatgtaaaagaaaaggaatttTTAGACCTAATCAACTTATGAAGTTGAAATTTCCACCAAAATGTGATGTCTATTCATGAAAATGATATCAAAGTAGCTTGTCTCTAAGCAAATATACATTAATTACAATGAAATGGTTTCCTTCAGGGACAGAAAAGACTCATGATATATAGGAATTTCTATTTGGTCTTGCAGTATAagctataaatatttttcttccatATTTTTAATGGCCTAAAGTGAATATAACTAAATGATCAGGACTAGtgagtgttaatgagtgtaAAGTCAGgataatattatttaaaggGTCACAGCAAAACATTGTCCTAGTGAGCCCTATTAACTCAGTCCTTTAGGTACTTTAtagattttttcatttctgtcatttcaAGTGCAAAAATTAGCCTAAGTAGCAATTCCTTTTTCAATGTGTCATCTGTTTTTTAGCAGCTTAACCCATGTTGGgactttccttctttttaatctaaactcagcattttttttgtttgtttgtttgtttgattccTCCTAGCAGTAATTTCTTTTGCTGCTTTAAAGACTGATATTATAACagatattaaatttaaaatgtaatttatttaatgtataataTGTTAACAGTGATGTTTTACTGTCCCAAATTCTCTAAGAGTACAGCTGCCATTTCTGGTCCAAgcttatttgtaataataaaaatacagacatttatataagatttcttcctttttttaaatgtcttggGTACTTCTGtatacacctttttttttgtttttttcacttcaaATTTTGTGTCCACCTGATTTCTTTCAAGCCCTTGAATTTCAGTTTTGAAATTAGGatagcactttattttatagTAACTACAGTATTTAATGAGTAgatatgtaataattaaaagtgATGTCTTGTACGTACTTTACATGTTGAATAAAGTTGGAAAATAA

Function

GO: NA

KEGG:

id description
K08388 P2RY13; P2Y purinoceptor 13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940970.2 True 3354 mRNA 0.40 3 4270065 4276958
XM_026940971.2 False 3296 mRNA 0.40 3 4267090 4276958

Neighbor

gene id symbol gene type direction distance location
LOC113543045 LOC108280189 coding upstream 3804 4258365 ~ 4263286 (+)
p2ry12 LOC108280198 coding upstream 10256 4251870 ~ 4256834 (+)
igsf10 igsf10 coding upstream 28384 4225498 ~ 4238706 (+)
LOC113543359 LOC108280252 coding upstream 83661 4174793 ~ 4183429 (+)
tagln LOC108280395,LOC108424042,LOC103045968,LOC107567684 coding upstream 298739 3962755 ~ 3968351 (+)
LOC113543011 LOC108280892 coding downstream 6209 4283167 ~ 4290110 (+)
wdr53 wdr53 coding downstream 23841 4300799 ~ 4308052 (+)
LOC113543315 LOC108280769,LOC108423999 coding downstream 38785 4315743 ~ 4350544 (+)
cux1b cux1,LOC106581515,LOC105006988 coding downstream 100036 4376994 ~ 4533974 (+)
LOC113543006 sh2b2,LOC107573094 coding downstream 269177 4546135 ~ 4576648 (+)
G314222 NA non-coding upstream 266776 3996502 ~ 4000314 (+)
LOC117599982 NA non-coding upstream 371405 3888027 ~ 3895685 (+)
G313990 NA non-coding upstream 420995 3845857 ~ 3846095 (+)
G313949 NA non-coding upstream 447181 3773070 ~ 3819909 (+)
G314362 LOC108280893 non-coding downstream 13296 4290254 ~ 4293729 (+)
G314364 NA non-coding downstream 17907 4294865 ~ 4295074 (+)
G314402 NA non-coding downstream 102679 4379637 ~ 4384865 (+)
G314404 NA non-coding downstream 240643 4517601 ~ 4527820 (+)
G314609 NA non-coding downstream 502980 4779938 ~ 4780145 (+)
LOC113543208 LOC108280571,LOC108435486 other upstream 777723 3423567 ~ 3489367 (+)
trnat-agu_12 NA other upstream 1377702 2889315 ~ 2889388 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other upstream 1591242 2675281 ~ 2675848 (+)
LOC117599997 LOC108280771,LOC108435500 other upstream 1604691 2655200 ~ 2662399 (+)
G313112 zswim5 other upstream 2081413 2181979 ~ 2185677 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other downstream 315482 4592440 ~ 4762095 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other downstream 510890 4787848 ~ 4789835 (+)
LOC113543089 mbp other downstream 624512 4901470 ~ 4958121 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other downstream 810881 5087839 ~ 5091273 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other downstream 924063 5201021 ~ 5216591 (+)

Expression


Co-expression Network