tagln (LOC108280395,LOC108424042,LOC103045968,LOC107567684)


Basic Information

Item Value
gene id tagln
gene name LOC108280395,LOC108424042,LOC103045968,LOC107567684
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 3962755 ~ 3968351 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940989.2
TTTAAGCCTGCTCTTTTCAGAGGGAGGACTCTCCTGCCGCTGCATAAAACACCCACGCCCAGAGATCCACACGCGCATacttcccaacacacactccttccgAACTGTGCGGAGGACCTTCATCCTAAAACTTATACACAGCCCAGAGCGTGGTGGTGTCCAGACATCAAGATGGCAGCACAGCAGGGAACCCCAGCCATGGCCAACAAAGGTCCATCCTACGGACTGAGTCGCCAGGTGCAGGACAAGATCGATAAGAAGTATGACCCGGAGCTTGAGCAGCGTCTGGTGGAGTGGATTGTAGCCCAGTGCGGTTCTGCAGTGGGGAAGCCTGCAGATGGCAAGCATGGCTTCCAGGATTGGCTGAAAGATGGATGTGTCCTGAGTGAGCTCATCAACAGTCTCCATGATGGAGACAAGCCCGTAAAAAAGATCCAAAGCTCACCAATGGCCTTCAAACAGATGGAGCAGGTGTCTCAGTTCCTTAATGCTGCAGAGGCCTATGGCGTGACCAAAACCGACATGTTTCAGACTGTCGATCTCTGGGAGGGAAAAGACTTGGCTGCGGTGCAAAGAACACTGATGGCCCTTGGCAGCATTGCAGTCACAAAGAATGATGGGACTTTCCGTGGTAACCCTGACTGGTTCTTCAAGAAAGCTCAGGAGAACCGGAGGGACTTTTCTGAGGACCAGCTGAAATCAGGGAAGAATGTTATTGGCCTGCAGATGGGCTCCAACAAAGGGGCATCCCAGGCTGGCATGACAGGCTACGGTAGACCCAGACAGATCCTAAACCCTTAAATCCACTAATTTCTAAACCCCATCCATCCCTTTCCACTTCCCCTTACCACTCTAAACATGCGCCAAAGTCTTAAATCTACCACACCATCCGTATACCGACAGCAGAAGGATATatacattcatgcattcatacaCTGCTCACATACGAAATCAGAAACAAACCAACATTGCTGTTGCACATCTGGGACGAGTAATGAGTTGCTGAAAACGTTGAACGAATTCCCAAAATACGGCACATGGATGATGTAAATTTGATAAAGTTTGGCTTTTGTCCTAATATTCTAAGTGATTTTAGTTCCAATGTAATAAAGGAGGTAACTGACTGACAAAAGATTTTAATCATTTGGAAGTCTGTGATAACACCTTTATTTTAGCGAACCTGTACTTCTATGGTCAAAGTTCTATGCAAATAAAGGTATGCTAAAACAA
>XM_026940990.2
TTAAGCCTGCTCTTTTCAGAGGGAGGACTCTCCTGCCGCTGCATAAAACACCCACGCCCAGAGATCCACACGCGCATacttcccaacacacactccttccgAACTGTGCGGAGGACCTTCATCCTAAAACTTATACACAGCCCAGAGCGTGGTGGTGTCCAGACATCAAGATGGCAGCACAGGGAACCCCAGCCATGGCCAACAAAGGTCCATCCTACGGACTGAGTCGCCAGGTGCAGGACAAGATCGATAAGAAGTATGACCCGGAGCTTGAGCAGCGTCTGGTGGAGTGGATTGTAGCCCAGTGCGGTTCTGCAGTGGGGAAGCCTGCAGATGGCAAGCATGGCTTCCAGGATTGGCTGAAAGATGGATGTGTCCTGAGTGAGCTCATCAACAGTCTCCATGATGGAGACAAGCCCGTAAAAAAGATCCAAAGCTCACCAATGGCCTTCAAACAGATGGAGCAGGTGTCTCAGTTCCTTAATGCTGCAGAGGCCTATGGCGTGACCAAAACCGACATGTTTCAGACTGTCGATCTCTGGGAGGGAAAAGACTTGGCTGCGGTGCAAAGAACACTGATGGCCCTTGGCAGCATTGCAGTCACAAAGAATGATGGGACTTTCCGTGGTAACCCTGACTGGTTCTTCAAGAAAGCTCAGGAGAACCGGAGGGACTTTTCTGAGGACCAGCTGAAATCAGGGAAGAATGTTATTGGCCTGCAGATGGGCTCCAACAAAGGGGCATCCCAGGCTGGCATGACAGGCTACGGTAGACCCAGACAGATCCTAAACCCTTAAATCCACTAATTTCTAAACCCCATCCATCCCTTTCCACTTCCCCTTACCACTCTAAACATGCGCCAAAGTCTTAAATCTACCACACCATCCGTATACCGACAGCAGAAGGATATatacattcatgcattcatacaCTGCTCACATACGAAATCAGAAACAAACCAACATTGCTGTTGCACATCTGGGACGAGTAATGAGTTGCTGAAAACGTTGAACGAATTCCCAAAATACGGCACATGGATGATGTAAATTTGATAAAGTTTGGCTTTTGTCCTAATATTCTAAGTGATTTTAGTTCCAATGTAATAAAGGAGGTAACTGACTGACAAAAGATTTTAATCATTTGGAAGTCTGTGATAACACCTTTATTTTAGCGAACCTGTACTTCTATGGTCAAAGTTCTATGCAAATAAAGGTATGCTAAAACAA
>XM_026940991.2
TTTTAAGCCTGCTCTTTTCAGAGGGAGGACTCTCCTGCCGCTGCATAAAACACCCACGCCCAGAGATCCACACGCGCATacttcccaacacacactccttccgAACTGTGCGGAGGACCTTCATCCTAAAACTTATACACAGGAACCCCAGCCATGGCCAACAAAGGTCCATCCTACGGACTGAGTCGCCAGGTGCAGGACAAGATCGATAAGAAGTATGACCCGGAGCTTGAGCAGCGTCTGGTGGAGTGGATTGTAGCCCAGTGCGGTTCTGCAGTGGGGAAGCCTGCAGATGGCAAGCATGGCTTCCAGGATTGGCTGAAAGATGGATGTGTCCTGAGTGAGCTCATCAACAGTCTCCATGATGGAGACAAGCCCGTAAAAAAGATCCAAAGCTCACCAATGGCCTTCAAACAGATGGAGCAGGTGTCTCAGTTCCTTAATGCTGCAGAGGCCTATGGCGTGACCAAAACCGACATGTTTCAGACTGTCGATCTCTGGGAGGGAAAAGACTTGGCTGCGGTGCAAAGAACACTGATGGCCCTTGGCAGCATTGCAGTCACAAAGAATGATGGGACTTTCCGTGGTAACCCTGACTGGTTCTTCAAGAAAGCTCAGGAGAACCGGAGGGACTTTTCTGAGGACCAGCTGAAATCAGGGAAGAATGTTATTGGCCTGCAGATGGGCTCCAACAAAGGGGCATCCCAGGCTGGCATGACAGGCTACGGTAGACCCAGACAGATCCTAAACCCTTAAATCCACTAATTTCTAAACCCCATCCATCCCTTTCCACTTCCCCTTACCACTCTAAACATGCGCCAAAGTCTTAAATCTACCACACCATCCGTATACCGACAGCAGAAGGATATatacattcatgcattcatacaCTGCTCACATACGAAATCAGAAACAAACCAACATTGCTGTTGCACATCTGGGACGAGTAATGAGTTGCTGAAAACGTTGAACGAATTCCCAAAATACGGCACATGGATGATGTAAATTTGATAAAGTTTGGCTTTTGTCCTAATATTCTAAGTGATTTTAGTTCCAATGTAATAAAGGAGGTAACTGACTGACAAAAGATTTTAATCATTTGGAAGTCTGTGATAACACCTTTATTTTAGCGAACCTGTACTTCTATGGTCAAAGTTCTATGCAAATAAAGGTATGCTAAAACAA
>XM_026940992.2
TTTTAAGCCTGCTCTTTTCAGAGGGAGGACTCTCCTGCCGCTGCATAAAACACCCACGCCCAGAGATCCACACGCGCATacttcccaacacacactccttccgAACTGTGCGGAGGACCTTCATCCTAAAACTTATACACACAGGGAACCCCAGCCATGGCCAACAAAGGTCCATCCTACGGACTGAGTCGCCAGGTGCAGGACAAGATCGATAAGAAGTATGACCCGGAGCTTGAGCAGCGTCTGGTGGAGTGGATTGTAGCCCAGTGCGGTTCTGCAGTGGGGAAGCCTGCAGATGGCAAGCATGGCTTCCAGGATTGGCTGAAAGATGGATGTGTCCTGAGTGAGCTCATCAACAGTCTCCATGATGGAGACAAGCCCGTAAAAAAGATCCAAAGCTCACCAATGGCCTTCAAACAGATGGAGCAGGTGTCTCAGTTCCTTAATGCTGCAGAGGCCTATGGCGTGACCAAAACCGACATGTTTCAGACTGTCGATCTCTGGGAGGGAAAAGACTTGGCTGCGGTGCAAAGAACACTGATGGCCCTTGGCAGCATTGCAGTCACAAAGAATGATGGGACTTTCCGTGGTAACCCTGACTGGTTCTTCAAGAAAGCTCAGGAGAACCGGAGGGACTTTTCTGAGGACCAGCTGAAATCAGGGAAGAATGTTATTGGCCTGCAGATGGGCTCCAACAAAGGGGCATCCCAGGCTGGCATGACAGGCTACGGTAGACCCAGACAGATCCTAAACCCTTAAATCCACTAATTTCTAAACCCCATCCATCCCTTTCCACTTCCCCTTACCACTCTAAACATGCGCCAAAGTCTTAAATCTACCACACCATCCGTATACCGACAGCAGAAGGATATatacattcatgcattcatacaCTGCTCACATACGAAATCAGAAACAAACCAACATTGCTGTTGCACATCTGGGACGAGTAATGAGTTGCTGAAAACGTTGAACGAATTCCCAAAATACGGCACATGGATGATGTAAATTTGATAAAGTTTGGCTTTTGTCCTAATATTCTAAGTGATTTTAGTTCCAATGTAATAAAGGAGGTAACTGACTGACAAAAGATTTTAATCATTTGGAAGTCTGTGATAACACCTTTATTTTAGCGAACCTGTACTTCTATGGTCAAAGTTCTATGCAAATAAAGGTATGCTAAAACAA

Function

NR:

description
PREDICTED: transgelin isoform X1

GO:

id name namespace
GO:0007517 muscle organ development biological_process

KEGG:

id description
K20526 TAGLN; transgelin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940989.2 True 1230 mRNA 0.47 6 3962756 3968351
XM_026940990.2 False 1226 mRNA 0.47 6 3962757 3968351
XM_026940991.2 False 1185 mRNA 0.47 5 3962755 3968351
XM_026940992.2 False 1188 mRNA 0.47 5 3962755 3968351

Neighbor

gene id symbol gene type direction distance location
trnap-ugg_21 NA coding upstream 15749 3946935 ~ 3947006 (+)
pmvk pmvk coding upstream 145901 3813253 ~ 3816854 (+)
nt5c3a nt5c3a,LOC107697280,LOC107720166,LOC107581689,LOC107714420 coding upstream 300068 3647747 ~ 3662687 (+)
LOC113543357 NA coding upstream 316083 3642315 ~ 3646672 (+)
trnas-aga_16 NA coding upstream 334642 3628032 ~ 3628113 (+)
LOC113543359 LOC108280252 coding downstream 206442 4174793 ~ 4183429 (+)
igsf10 igsf10 coding downstream 257147 4225498 ~ 4238706 (+)
p2ry12 LOC108280198 coding downstream 283519 4251870 ~ 4256834 (+)
LOC113543045 LOC108280189 coding downstream 290014 4258365 ~ 4263286 (+)
LOC113543038 LOC108280160,LOC108424050 coding downstream 298739 4267090 ~ 4276958 (+)
LOC117599982 NA non-coding upstream 67070 3888027 ~ 3895685 (+)
G313990 NA non-coding upstream 116660 3845857 ~ 3846095 (+)
G313949 NA non-coding upstream 142846 3773070 ~ 3819909 (+)
G313975 NA non-coding upstream 154065 3807148 ~ 3808690 (+)
G313853 NA non-coding upstream 438237 3524309 ~ 3524518 (+)
G314222 NA non-coding downstream 28151 3996502 ~ 4000314 (+)
G314362 LOC108280893 non-coding downstream 321903 4290254 ~ 4293729 (+)
G314364 NA non-coding downstream 326514 4294865 ~ 4295074 (+)
G314402 NA non-coding downstream 411286 4379637 ~ 4384865 (+)
G314404 NA non-coding downstream 549250 4517601 ~ 4527820 (+)
LOC113543208 LOC108280571,LOC108435486 other upstream 473388 3423567 ~ 3489367 (+)
trnat-agu_12 NA other upstream 1073367 2889315 ~ 2889388 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other upstream 1286907 2675281 ~ 2675848 (+)
LOC117599997 LOC108280771,LOC108435500 other upstream 1300356 2655200 ~ 2662399 (+)
G313112 zswim5 other upstream 1777078 2181979 ~ 2185677 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other downstream 624089 4592440 ~ 4762095 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other downstream 819497 4787848 ~ 4789835 (+)
LOC113543089 mbp other downstream 933119 4901470 ~ 4958121 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other downstream 1119488 5087839 ~ 5091273 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other downstream 1232670 5201021 ~ 5216591 (+)

Expression


Co-expression Network