cahz (cahz)


Basic Information

Item Value
gene id cahz
gene name cahz
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 1351263 ~ 1357482 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940999.2
ACTCTATGAATTGATTCGGAGTGAGCGTCACTCCAGTGCATTCACTGATCCTGCCGGTTTGACCCAACCTCCCTCTCTGTGTGCCAAACCCTCTGATGTGGAGATTCATGTGAGACAGGTttcaaagtgtgtgtataaaagctGGAGGCTGAGCAGCTCCTCACACTGACTGACTCTCAGCATCCAGGCTGTGAGGAACCTCCAGAGAGGAAAACTTTCCAACTTGGACAAGAAAGAACCCAAAGGAAGCATGTCTCACCACTGGGGTTACGGCACTAATGATGGTCCTGCCAAATGGGCTGATCACTTCCCCATCGCTAACGGACCCCGGCAGTCTCCCATTAACATCGTCCCGAGCCAGGCCCAGTTCGACTCGTCTCTCAAGCCACTCAAGCTTCAGTACGACGCGTCTACATCCAAAGACATCCTGAACAATGGCCATTCATTCCAAGTGAACTTCCTGGACGAGAAGGACAACGCAAttctgaTCGGTGGGCCCATCACTGGCACCTACAGACTGAAGCAGTTCCACTGCCACTGGGGCGCGAGTGATGACAAAGGGTCTGAGCACACAGTCGATGGCGTCAGGTACCCCTGCGAGCTGCATCTGGTGCACTGGAACACCAAGTATGAGAACTTTAATGAGGCCGTGAGCAAACCTGATGGCTTGGCAGTTGTTGGAGTCTTTCTGAAGCTTGGTTCTGCCAATCCCCGACTGCAGAAAGTTCTGGATACCTTTGATGCCATCAAAGCAAAGGGTCAGCAAACCACATTTTTGAACTTTGACCCCAAGAACCTGTTGCCTGCCTCTCTGAATTTCTGGACTTATGAAGGTTCTCTCACCACACCACCTCTGTATGAGAGCGTCACCTGGATCGTCCTGAGAGAGCCGATTAGCGTGAGCTCTGCTCAGatgGCAAAATTCCGCAGTCTTTTGTTCAGCTCGGAGGGAGAGCAACCTTGCTGTATGTGCGATAACTACAGACCCCCTCAGCCTTTAAAAGGACGCAAAGTTCGCAGCAGCTTTAAGTAAACCGCAGAACGCACCTCTGACCCCGTACACTGAATGCATCTCAGCCAATCATAATGCTTCTTTTCCTCAGAATGTCCCTGTCGAACTCTGCAACTCAATTCttcattttgattcatttgaataACTGACTCATGTTAAACAAACTCTTTTGGGTTGGTTCAGATGATGCATATTGATTCTGCAGATTACACAAAATCTAAAAAGCTATGAATCAGTTggttcatttgtttaaattgaCTCATTTGTGCAAGCACAGATGATTTGGTTCAGCTGAACCAGTTGCCATATTTGAATTTTGTATAATACGAAAGAATATAAAATGCTATGAATTATTTGAACAATTTTGTTTTAGTTGGTCAAGATGAATCAGTTGGTTCATTTGAATTCTGAAATTGTACAAAGTATAAAGATGTGTGAATCAATGAGTTTAAATCTCAGATCAAATTAGCCAACTTTGAAAAGCTCGTTGAAAAATTCggcaactgaactgaaattaACCACTCATCATTTGGTTCATctaaattttaagaaaaaaaaaaccccaaaaaacaacagaagagaaAATGCTATGAGTCAGCTGGTTAATCTATTCAAATGAATCGACTCCCAATCTGTTTCAAGCGGTTACATGTAAAACTAATGACCTTATTGTattcattattaacattttactttttaattgtaaaatgttaagcTGTGTAGACCTTCCACATGCTAGGAAAGAGATAGTAATACTCACTATCCCCATTAGTTTAAGCTTCACCTTACTCCTGATGTTAGATTATCTACTGGATGTTTAGTATTTATGTGGTTTAGGTTGAGATATGTGAAATGTTCAGGGTGCAGAGCGCAGCAAAGAAGAAATCCCCTAGTGAAGCACTTCTAAAGTATATGGCTTCATGAAATTCACTTAAAGAAGCAGCTGTAGAGATCTAGAGAAACTATAAAAGACTTAACAAGTTTTGCTAAGATAAAAATTATTGCTTATtgctaaaataaaagaatgtcTATTTGTCTGTTTTACGAAAGGGTTGAATACTCTTAcgaataataaattaatatatttaaacatta

Function

symbol description
cahz Enables carbonate dehydratase activity. Acts upstream of or within carbon dioxide transport and hypotonic salinity response. Predicted to be active in cytoplasm. Is expressed in several structures, including hematopoietic system; mesoderm; nervous system; pleuroperitoneal region; and presumptive blood. Human ortholog(s) of this gene implicated in autosomal recessive osteopetrosis 3 and osteopetrosis. Orthologous to several human genes including CA2 (carbonic anhydrase 2).

NR:

description
carbonic anhydrase II

GO:

id name namespace
GO:0042539 hypotonic salinity response biological_process
GO:0006730 one-carbon metabolic process biological_process
GO:0015670 carbon dioxide transport biological_process
GO:0008270 zinc ion binding molecular_function
GO:0004089 carbonate dehydratase activity molecular_function

KEGG:

id description
K18245 CA2; carbonic anhydrase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940999.2 True 2107 mRNA 0.42 7 1351263 1357482

Neighbor

gene id symbol gene type direction distance location
cnpy1 cnpy1,LOC108435706 coding upstream 284796 1053868 ~ 1066467 (+)
shhb LOC108280234 coding upstream 339071 1003909 ~ 1012192 (+)
trpa1a LOC108280835,LOC108435699 coding upstream 385646 946792 ~ 965617 (+)
tmem70 tmem70 coding upstream 449639 898058 ~ 901624 (+)
rdh10b rdh10b,LOC108280502,LOC108435720,LOC107550714,LOC107664055 coding upstream 477497 868721 ~ 873766 (+)
cdh6 LOC108280858,LOC108432255,LOC107678945,LOC107667294,LOC107567409 coding downstream 530268 1887750 ~ 1935629 (+)
zgc:163121 LOC108280641,LOC108432257 coding downstream 625834 1983316 ~ 2018166 (+)
LOC113543213 rnf31,LOC108432260 coding downstream 684718 2042200 ~ 2060017 (+)
xkr4 xkr4,zgc:123035,LOC107714844,LOC107728991,LOC107674319,LOC107679338 coding downstream 711879 2069361 ~ 2116180 (+)
lyn lyn,LOC108280443,LOC103026730,LOC108432264,LOC107674289 coding downstream 789793 2147275 ~ 2168213 (+)
LOC117599954 NA non-coding upstream 246939 1089858 ~ 1104324 (+)
LOC117599981 NA non-coding upstream 371212 976621 ~ 980051 (+)
G312540 NA non-coding upstream 444817 906234 ~ 906446 (+)
G312534 NA non-coding upstream 465149 883404 ~ 886114 (+)
G312531 NA non-coding upstream 475383 875663 ~ 875880 (+)
LOC117599969 NA non-coding downstream 5894 1363376 ~ 1370691 (+)
G312877 NA non-coding downstream 164819 1522301 ~ 1522511 (+)
LOC113543035 NA non-coding downstream 267081 1624563 ~ 1662193 (+)
G313016 NA non-coding downstream 537220 1894702 ~ 1894947 (+)
G313053 NA non-coding downstream 616617 1974099 ~ 1976715 (+)
paxip1 paxip1,LOC106569237,LOC107550719 other upstream 203887 1128909 ~ 1147376 (+)
jph1b jph1b,jph1,LOC108280498,LOC107550709,LOC108435725,LOC107584332,LOC107746914,LOC107686034,LOC107664083,LOC107732545 other upstream 504246 820530 ~ 847017 (+)
LOC113543349 iws1 other upstream 633972 704778 ~ 717291 (+)
atpv0e2 LOC108280382,LOC100691746,LOC107588449,LOC107551367,LOC107706116 other upstream 849874 413619 ~ 501389 (+)
snap91a snap91,LOC108280370 other upstream 1032301 274822 ~ 318962 (+)
c21h5orf22 c20h5orf22,LOC107714825 other downstream 608258 1965740 ~ 1977309 (+)
tgs1 tgs1 other downstream 775668 2133150 ~ 2145237 (+)
G313112 zswim5 other downstream 824497 2181979 ~ 2185677 (+)
LOC117599997 LOC108280771,LOC108435500 other downstream 1297718 2655200 ~ 2662399 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other downstream 1317799 2675281 ~ 2675848 (+)

Expression


Co-expression Network