tmx3a (LOC108280544)


Basic Information

Item Value
gene id tmx3a
gene name LOC108280544
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 2298126 ~ 2318867 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941100.2
ttaaaaaaaattgataatgattaaaaatatctcCAATCATTAATGAAGGAACTATTATGACCAATCTGTTAAATGTTAGTTCACAGCAACTCCGATCAGGACAAAGCaattattaaagattaaagatgcAAGAAGCTGCATATAAATGCAGAGGAATAGGAACCTCAGAGGAACCTCACACAGAAGGTTGTGGGAGACGGTACTGCTCGTTCTCACAAGCTGgattaacatttacaaacatttacaaacatttacactctGTTAGGTACATGGATGGTGGTTTGTAAGAACAAAATTGCACTCAGAAACAGAACCATGTAGACAAACTGAGGCAGACTGTGTCAGGTTCAGATGTGTACAGCAGCTAGAGAAGAaaatggatacacacacacacacacacacacacattttcagcaGCCCGTGTGAAGAGGAAAAGAGGGTTGCAGCTAGGCTTCATCCTTAAAGTCAGTCCCTAATCCCCCGGTCTAATCTGGTCACTGGGTCACTAGAGTGCTGCCTAATAATCATTCCATGTCTCTGTCCTTCTTCTACACACTCTCTatttcatcatcaaacacaATCATGGCAACCTCAAGACACTTCATCTGCTCAGTGCTTGTAGTGAGCATAAGCCTCGCGGCAGCGTATGTTGAAGAACTGGACGACAGatttaatgagATGCGTAGGAGTGAGCCCTGGCTGGTGGAATTTTATGCTCCGTGGTGTGAATATTGTAAAACATTTGAGCCGATATGGTACGATGTTGCAGCCGAGCTGAAGAGTCAGGGCTCTCACATCAATGTGGGCAAACTTGACACCACTGTCTACACCGatgCTGTCACAGAGTTAAAAATTCGTGGATATCCATCTATAATTTTTATAAAAGGAGATAAGTATTTTCACTACAACGGCCAGAAGACAAAAGATGCCATCCTTGAATTCACCTACAGAGTTTCTGGTCCCTCTGTGCGAGCTCTGACCAGCGTACAGCTCTTCCAGCACGTCCTGAGTCGCCATCAGCTTTTCTTTGTTTACGTCGGAGGGAGGTCACCGCTTAAGGGACAGTTTTATAAAGTGGCATCTGAATTTCTCATCCACAACTATTTTTTCTCAGCCACCGTGGACGTTTTACCGCAGGCAGTCACATTGCAAGACGTTCCCTCTGTCGTGGTGTTCAAAGACGGAGCTTATGACATCTACAACGAGGTACGCGACGGCAATCTTTCCTCCTGGGTGGACCGAGAGCGTTTTCCTCGTTATTTCCTGATGGACAGCTTCTCCTTGTACCAGATGGGTGAACGAACTAAActtgtagctgtagctgtggtGGATGAGAAAAACCCATCTGCAGAAAGTAGTCGTTATAAGAGCCTTGTGGAAAAGGTGGCCACAGAATACAGCGACCAGTACAGCATGAACTTCCAGTTTGGCTACGTGGATGGAAACGACTACATCAATGGCGTCATAATGGGCGAGTTGCCAGTGCCTTCTCTGATTGTGATGAACATGTCCATTGATGGATATTATCTACCTGGATATACGGTTGAGACCATTGAAGATCTTCTCCAGTTCCTCAATAGCATCCTGACTGGAAGATCTGAGTTACTCGGAGGGAACGGATTCCTGCGGCGGATAAAGAGACTTTATTATCGTGCAACATCTGCTTTAAAGACGAGTTTCGCATCAGCTCCCTTCGGTACatgttttcttatttccttGCCGTTGGTCGTGATTGGATTCATCGTCATGGGAATCTGCACGGCTGAGAGGGTGGATGATGAAAAGGCAGATGATGGCACTCGTTCTGCGGTCACTCACAGGAAGAAAGCAGCAGTGAAACACTCTGAAGCCAAGAAAAAAGATTAACGTGACCACAATCATTACAGTGGTTCCCAGCCCTGGTACTCGACTGCCATTACTAtgaacattttactgttttctctgctctaacacacacacacacacacacacatatacactgacTCAGCAAAGGGCTGTTAGTTAGACAAATTAGTTTAATTAACTGTGTTAAAGCAAATAACTCAGTGAAATAGGCAACATGGTTGTTGGTATTATGATgttaaaattcattaataatttatggAAACTCAAATGttcaaattataataataaaaactcacgtaattaattatttgtaatttgtaatgcaTTTTGTAACACTGTTCTGACTAACAGCACAAATGCTGGGGTTGTCAGGGAAGTATCATGTTTAATCATCATGTGTAAGGAAGTAAGgaataagaaaggaataaaacacactgagtcATGATgatataggaaaacaatcaa
>XM_026941102.2
GCTCATTTTTGGACCTGAAAATGTAAACTTTGTTCACTCTGTGTTTACGGATTGATTACAGCCATCTTGAGTTCTACATTTTTGCCTGGACGTGGTGATCTTTCAAAACAGGAAGGTCTGCACACAGTTTTGCAGTCAGatttaatgagATGCGTAGGAGTGAGCCCTGGCTGGTGGAATTTTATGCTCCGTGGTGTGAATATTGTAAAACATTTGAGCCGATATGGTACGATGTTGCAGCCGAGCTGAAGAGTCAGGGCTCTCACATCAATGTGGGCAAACTTGACACCACTGTCTACACCGatgCTGTCACAGAGTTAAAAATTCGTGGATATCCATCTATAATTTTTATAAAAGGAGATAAGTATTTTCACTACAACGGCCAGAAGACAAAAGATGCCATCCTTGAATTCACCTACAGAGTTTCTGGTCCCTCTGTGCGAGCTCTGACCAGCGTACAGCTCTTCCAGCACGTCCTGAGTCGCCATCAGCTTTTCTTTGTTTACGTCGGAGGGAGGTCACCGCTTAAGGGACAGTTTTATAAAGTGGCATCTGAATTTCTCATCCACAACTATTTTTTCTCAGCCACCGTGGACGTTTTACCGCAGGCAGTCACATTGCAAGACGTTCCCTCTGTCGTGGTGTTCAAAGACGGAGCTTATGACATCTACAACGAGGTACGCGACGGCAATCTTTCCTCCTGGGTGGACCGAGAGCGTTTTCCTCGTTATTTCCTGATGGACAGCTTCTCCTTGTACCAGATGGGTGAACGAACTAAActtgtagctgtagctgtggtGGATGAGAAAAACCCATCTGCAGAAAGTAGTCGTTATAAGAGCCTTGTGGAAAAGGTGGCCACAGAATACAGCGACCAGTACAGCATGAACTTCCAGTTTGGCTACGTGGATGGAAACGACTACATCAATGGCGTCATAATGGGCGAGTTGCCAGTGCCTTCTCTGATTGTGATGAACATGTCCATTGATGGATATTATCTACCTGGATATACGGTTGAGACCATTGAAGATCTTCTCCAGTTCCTCAATAGCATCCTGACTGGAAGATCTGAGTTACTCGGAGGGAACGGATTCCTGCGGCGGATAAAGAGACTTTATTATCGTGCAACATCTGCTTTAAAGACGAGTTTCGCATCAGCTCCCTTCGGTACatgttttcttatttccttGCCGTTGGTCGTGATTGGATTCATCGTCATGGGAATCTGCACGGCTGAGAGGGTGGATGATGAAAAGGCAGATGATGGCACTCGTTCTGCGGTCACTCACAGGAAGAAAGCAGCAGTGAAACACTCTGAAGCCAAGAAAAAAGATTAACGTGACCACAATCATTACAGTGGTTCCCAGCCCTGGTACTCGACTGCCATTACTAtgaacattttactgttttctctgctctaacacacacacacacacacacacatatacactgacTCAGCAAAGGGCTGTTAGTTAGACAAATTAGTTTAATTAACTGTGTTAAAGCAAATAACTCAGTGAAATAGGCAACATGGTTGTTGGTATTATGATgttaaaattcattaataatttatggAAACTCAAATGttcaaattataataataaaaactcacgtaattaattatttgtaatttgtaatgcaTTTTGTAACACTGTTCTGACTAACAGCACAAATGCTGGGGTTGTCAGGGAAGTATCATGTTTAATCATCATGTGTAAGGAAGTAAGgaataagaaaggaataaaacacactgagtcATGATgatataggaaaacaatcaa
>XM_034314711.1
ACCTGAAAATGTAAACTTTGTTCACTCTGTGTTTACGGATTGATTACAGCCATCTTGAGTTCTACATTTTTGCCTGGACGTGGTGATCTTTCAAAACAGGAAGGTCTGCACACAGTTTTGCAGTCAGTGCTTGTAGTGAGCATAAGCCTCGCGGCAGCGTATGTTGAAGAACTGGACGACAGatttaatgagATGCGTAGGAGTGAGCCCTGGCTGGTGGAATTTTATGCTCCGTGGTGTGAATATTGTAAAACATTTGAGCCGATATGGTACGATGTTGCAGCCGAGCTGAAGAGTCAGGGCTCTCACATCAATGTGGGCAAACTTGACACCACTGTCTACACCGatgCTGTCACAGAGTTAAAAATTCGTGGATATCCATCTATAATTTTTATAAAAGGAGATAAGTATTTTCACTACAACGGCCAGAAGACAAAAGATGCCATCCTTGAATTCACCTACAGAGTTTCTGGTCCCTCTGTGCGAGCTCTGACCAGCGTACAGCTCTTCCAGCACGTCCTGAGTCGCCATCAGCTTTTCTTTGTTTACGTCGGAGGGAGGTCACCGCTTAAGGGACAGTTTTATAAAGTGGCATCTGAATTTCTCATCCACAACTATTTTTTCTCAGCCACCGTGGACGTTTTACCGCAGGCAGTCACATTGCAAGACGTTCCCTCTGTCGTGGTGTTCAAAGACGGAGCTTATGACATCTACAACGAGGTACGCGACGGCAATCTTTCCTCCTGGGTGGACCGAGAGCGTTTTCCTCGTTATTTCCTGATGGACAGCTTCTCCTTGTACCAGATGGGTGAACGAACTAAActtgtagctgtagctgtggtGGATGAGAAAAACCCATCTGCAGAAAGTAGTCGTTATAAGAGCCTTGTGGAAAAGGTGGCCACAGAATACAGCGACCAGTACAGCATGAACTTCCAGTTTGGCTACGTGGATGGAAACGACTACATCAATGGCGTCATAATGGGCGAGTTGCCAGTGCCTTCTCTGATTGTGATGAACATGTCCATTGATGGATATTATCTACCTGGATATACGGTTGAGACCATTGAAGATCTTCTCCAGTTCCTCAATAGCATCCTGACTGGAAGATCTGAGTTACTCGGAGGGAACGGATTCCTGCGGCGGATAAAGAGACTTTATTATCGTGCAACATCTGCTTTAAAGACGAGTTTCGCATCAGCTCCCTTCGGTACatgttttcttatttccttGCCGTTGGTCGTGATTGGATTCATCGTCATGGGAATCTGCACGGCTGAGAGGGTGGATGATGAAAAGGCAGATGATGGCACTCGTTCTGCGGTCACTCACAGGAAGAAAGCAGCAGTGAAACACTCTGAAGCCAAGAAAAAAGATTAACGTGACCACAATCATTACAGTGGTTCCCAGCCCTGGTACTCGACTGCCATTACTAtgaacattttactgttttctctgctctaacacacacacacacacacacacatatacactgacTCAGCAAAGGGCTGTTAGTTAGACAAATTAGTTTAATTAACTGTGTTAAAGCAAATAACTCAGTGAAATAGGCAACATGGTTGTTGGTATTATGATgttaaaattcattaataatttatggAAACTCAAATGttcaaattataataataaaaactcacgtaattaattatttgtaatttgtaatgcaTTTTGTAACACTGTTCTGACTAACAGCACAAATGCTGGGGTTGTCAGGGAAGTATCATGTTTAATCATCATGTGTAAGGAAGTAAGgaataagaaaggaataaaacacactgagtcATGATgatataggaaaacaatcaa

Function

NR:

description
PREDICTED: protein disulfide-isomerase TMX3-like isoform X1

GO:

id name namespace
GO:0001654 eye development biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941100.2 True 2310 mRNA 0.42 16 2305769 2318867
XM_026941102.2 False 1781 mRNA 0.43 15 2298126 2318867
XM_034314711.1 False 1824 mRNA 0.43 16 2298138 2318867

Neighbor

gene id symbol gene type direction distance location
toe1 toe1 coding upstream 23180 2268447 ~ 2274946 (+)
urod urod,LOC107729049,LOC107679325,LOC107714848,LOC107674254 coding upstream 121761 2169048 ~ 2176365 (+)
lyn lyn,LOC108280443,LOC103026730,LOC108432264,LOC107674289 coding upstream 129913 2147275 ~ 2168213 (+)
xkr4 xkr4,zgc:123035,LOC107714844,LOC107728991,LOC107674319,LOC107679338 coding upstream 181946 2069361 ~ 2116180 (+)
LOC113543213 rnf31,LOC108432260 coding upstream 238109 2042200 ~ 2060017 (+)
dsela dsel coding downstream 1007 2319874 ~ 2325480 (+)
trnae-cuc_41 NA coding downstream 175365 2494232 ~ 2494303 (+)
si:dkey-181m9.8 LOC108280771 coding downstream 326664 2645531 ~ 2655148 (+)
c21h7orf25 c20h7orf25,cunh7orf25,zgc:55781 coding downstream 395572 2714439 ~ 2717698 (+)
ralab rala,ralaa,LOC107565693,LOC103042957 coding downstream 399892 2718759 ~ 2728068 (+)
G313052 NA non-coding upstream 174692 2116324 ~ 2123434 (+)
G313053 NA non-coding upstream 321411 1974099 ~ 1976715 (+)
G313016 NA non-coding upstream 403179 1894702 ~ 1894947 (+)
LOC113543035 NA non-coding upstream 635933 1624563 ~ 1662193 (+)
G312877 NA non-coding upstream 775615 1522301 ~ 1522511 (+)
G313443 NA non-coding downstream 355566 2674433 ~ 2674646 (+)
LOC117599939 NA non-coding downstream 412348 2731215 ~ 2736588 (+)
G313465 NA non-coding downstream 416252 2735119 ~ 2735384 (+)
G313494 NA non-coding downstream 470375 2789242 ~ 2789496 (+)
LOC113543325 NA non-coding downstream 623620 2942487 ~ 2945207 (+)
G313112 zswim5 other upstream 112449 2181979 ~ 2185677 (+)
tgs1 tgs1 other upstream 152889 2133150 ~ 2145237 (+)
c21h5orf22 c20h5orf22,LOC107714825 other upstream 320817 1965740 ~ 1977309 (+)
paxip1 paxip1,LOC106569237,LOC107550719 other upstream 1150750 1128909 ~ 1147376 (+)
jph1b jph1b,jph1,LOC108280498,LOC107550709,LOC108435725,LOC107584332,LOC107746914,LOC107686034,LOC107664083,LOC107732545 other upstream 1451109 820530 ~ 847017 (+)
LOC117599997 LOC108280771,LOC108435500 other downstream 336333 2655200 ~ 2662399 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other downstream 356414 2675281 ~ 2675848 (+)
trnat-agu_12 NA other downstream 570448 2889315 ~ 2889388 (+)
LOC113543208 LOC108280571,LOC108435486 other downstream 1104700 3423567 ~ 3489367 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other downstream 2273573 4592440 ~ 4762095 (+)

Expression


Co-expression Network