gtpbp4 (gtpbp4,LOC107721733,LOC107749117,LOC107690210,LOC107659538)


Basic Information

Item Value
gene id gtpbp4
gene name gtpbp4,LOC107721733,LOC107749117,LOC107690210,LOC107659538
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 8667284 ~ 8678094 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941126.2
AGGGGGCAGTGTGAGAGGCGCTGCGGCAGCTGGGTTCGGTCTTTTCCGGTGCCGTAAACGCTGGCAGCACGTGCGTTGACGACATGGCACTCTACAACTTTAAAAAGATTATGGTGGTCCCCACTGCAAAGGACTTCATTGACCTGACGCTGTCTAAAACCCAGCGCAAAACCCCTACTGTGATTCACAAGCATTATCAGATTCATCGCATTCGCCACTTCTACATGCGAAAGGTTAAGTTCACACAACAGAACTACCACGACCGTCTCTCACAGATCATAGCGGACTTCCCCAAGCTGGATGATATTCACCCTTTTTATGCTGATCTGATGAATGTATTGTACGATAAGGATCATTATAAACTTGCTCTGGGTCAGATCAACATTGCCAAGAACCTGATTGATAAtGTAGCTAAAGACTATGTGCGTCTGATGAAGTATGGCGACTCACTGTATCGCTGCAAGCAGTTAAAGAGAGCAGCACTCGGTCGCATGTGCACCATCTtgaagagacagaaacagagtcTGGAATATCTAGAACAAGTTCGTCAGCATCTTTCTCGTCTGCCCACAATCGACCCAAACACCAGAACTCTTCTGCTCTGTGGGTACCCCAATGTTGGCAAGTCCAGCTTCATCAACAAGGTCACACGTGCAGATGTGGAGGTGCAGCCGTATGCCTTCACCACTAAATCTCTGTTTGTGGGTCACATGGACTATAAGTACCTCCGCTGGCAGgtAGTGGACACCCCCGGTATCCTGGACCATCCATTGGAAGAGCGGAACACAATTGAGATGCAGGCAATCACTGCGCTGGCCCACCTGAGGGCTGCCGTGCTCTATGTGATGGACATATCTGAGCAGTGTggacacacactttcacagcaGCTTGAACTGTTTAACAGTATCAGACCCCTCTTTGCAAACAAGCCTCTGATTGTGGTGGCCAATAAGTGTGATGTGAAGAAGATCAGTGACCTGTCTGAGGAGAATCGGAAAATTTTTGCTGATCTCTTGTCTGAGGGGATCCCAGTGATTGAGACCAGCACTCTGACAGAGGAGGGGGTCATGCAAGTAAAGACTGAGGCATGTGATAGGCTGCTGGTCCACCGTGTGGACACAAAGATGAAGGGGAAGAAAGTACATGACATCCTGAACAGACTCCACCTTGCAGTGCCAACCAAGAGAGACGACAAGGAAAGACCACCGTTTATCCCTGAGGGAGCAGCTCTTCGCAGAAAGGTGATGGAGGTTGACACTCCTAAACGTAAACTGGAGAGAGACCTTGAAATAGAGCTTGGAGATGATTACACACTCGATTTGCAGAAATACTGGAACTTGATGAATGCTGATGAGAAGCATGATAAAATTCCTGAGATCTGGGAAGGACATAACATTGCTGACTACATTGATCCTGAAATCATGAAGCGATTGGCTGAGctggagaaggaggaagagctCCGTGAACAGGCAGGTGAGTATGACTCTAATGAAGAGAGTGAGGATGAAGAGATGCAGGAAATTCGGCAGCTGGCCAAACAGATTCGAGAGAAGAGAAAACTGAAGATTTTGGAGTCAAAAGAGAAGGATGTGCAGGGACCCAGAATGCCCCGTACTGTCAAGAAGGTGGACAGAGCAGCGTTGGAGAAAGACATGGAAGAACTTGGTTTGGACGTGACGGACAAAGATAATAGCCACTATGCCCAGCAGGCTCGGAGGTCACGTTCACTGGTTagaaagaggaagagggaaACATCTGTCTTGCCAACTTCACGCACCCGTAGTCAGAGTGCATCGAAACAACCACGTGACCAGTCAGGAATCAGAGATGCCAAGATGATGAAGAAGGTGAAGACTATGATGAAGAACTCTCAGAAGGGGATGAACAGGCAGGGAAAGAAGGGCGAATCAGACAGACACGTATTCGACTTGAAACCGAAACACCTGCTTGCAGGAAAGAGAAAATCGGGCAGCACCAGCCGTCGATAAACACATTCTTCATTTTACATATGCTTGTGTATGTGCAAGCATGTGCATTTATAAACTTAATAAACACGTTTCTCTGATATCCAGGTTTATTTACATACCCAGCATCAGATATGCAAGGTTCATGATGTCCTCCACAAAATACTCCACTGAACATATTGCTGGACTTCTGTTGAGTTGTATGTGGATGGGAGTGAAATAAATCAGCATGAGCTGAATAAATagtt

Function

symbol description
gtpbp4 Predicted to enable GTP binding activity. Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in nucleolus. Is expressed in gill. Orthologous to human GTPBP4 (GTP binding protein 4).

NR:

description
nucleolar GTP-binding protein 1

GO:

id name namespace
GO:0042254 ribosome biogenesis biological_process
GO:0005730 nucleolus cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K06943 NOG1; nucleolar GTP-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941126.2 True 2212 mRNA 0.47 16 8667284 8678094

Neighbor

gene id symbol gene type direction distance location
slc39a6 slc39a6,LOC107749133 coding upstream 9685 8631553 ~ 8657599 (+)
LOC113542997 LOC108270649,LOC108428329 coding upstream 35947 8616397 ~ 8631337 (+)
LOC113543000 LOC108428331 coding upstream 81785 8552247 ~ 8585499 (+)
LOC113543002 LOC108280206 coding upstream 162054 8504015 ~ 8505230 (+)
adhfe1 adhfe1 coding upstream 190312 8467382 ~ 8476972 (+)
med17 med17 coding downstream 79863 8757957 ~ 8786658 (+)
cavin4a murc,murca,LOC107690354,LOC107749140,LOC107602614,LOC107721748 coding downstream 122603 8800697 ~ 8802910 (+)
urb1 urb1 coding downstream 137672 8815766 ~ 8891958 (+)
LOC113543050 LOC108280424 coding downstream 331107 9009201 ~ 9027258 (+)
LOC113543049 LOC108280422 coding downstream 355475 9033569 ~ 9163194 (+)
G317027 NA non-coding upstream 5508 8661286 ~ 8661776 (+)
G317008 NA non-coding upstream 79073 8587995 ~ 8588211 (+)
G316756 NA non-coding upstream 290191 8376785 ~ 8377093 (+)
G316754 NA non-coding upstream 333753 8332424 ~ 8333531 (+)
G316752 NA non-coding upstream 335498 8331506 ~ 8331786 (+)
G317031 NA non-coding downstream 11341 8689435 ~ 8691471 (+)
G317045 NA non-coding downstream 48247 8726341 ~ 8730818 (+)
G317113 NA non-coding downstream 115620 8793714 ~ 8793944 (+)
G317125 NA non-coding downstream 127176 8805270 ~ 8805725 (+)
G317136 NA non-coding downstream 142130 8820224 ~ 8821893 (+)
G316745 NA other upstream 398086 8268709 ~ 8269198 (+)
G316744 NA other upstream 403223 8263339 ~ 8264061 (+)
fitm1 fitm1,LOC107688462,LOC107585187,LOC107722554,LOC107589905 other upstream 910323 7751694 ~ 7756961 (+)
G316413 NA other upstream 971365 7695534 ~ 7695919 (+)
crsp7 LOC108280732 other upstream 1069120 7582313 ~ 7598164 (+)
LOC117599964 LOC107387363,LOC107676291,LOC107756568 other downstream 133501 8811595 ~ 8813410 (+)
G317390 NA other downstream 734229 9412323 ~ 9415164 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other downstream 1280899 9958993 ~ 9977916 (+)
capn10 capn10 other downstream 1858337 10536431 ~ 10562994 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other downstream 1885727 10563821 ~ 10568907 (+)

Expression


Co-expression Network