ralab (rala,ralaa,LOC107565693,LOC103042957)


Basic Information

Item Value
gene id ralab
gene name rala,ralaa,LOC107565693,LOC103042957
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 2718759 ~ 2728068 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941136.2
tttttttttttaaggatcaACTCCCAGTTCTGTACAAAACAAAGATGTCAAACTTGTCTCATAGCGAAGGGACaggaaaatcagaaaatattgTCATTTGGGATATTTTTACACGTTGTAGCTCTTGTGTATGTTCTGAGTAAATCTTATTTACACCGTTGTGTTTGGTATCTGGACTCTGGGGATATTTGGTTAGCCCTGGAGCTAAGTTTACACAAGAAGAATTAGGACGCAGGGGTTAGTTTGGCGCTTTTTAACAGACATTTCTTTAGCGTGTTAGCTCCTGGTACGAGCAGGGACGGGTTTTGGTGACGGATGAAACACTAAACAGTGTGAGTAAGCAGCTCTGGGCTTTACTGACTCATCTGTTTCTGatgtaaaagaagaaaattacCGGCACCAGCAGCGGTTCTGACCGGACATCATCGGCGCGTGACACTTGATTTCCTTCGCTAGGCTGAGTAAGCTGAGTAAATCCCACCTCCTGTCTGGTTTACCTCCTTTGGCttgtttttggaaaaatggCAGCTAATAAACCCAAAGCGCCGAACTCTCTGGCCCTCCACAAAGTGATAATGGTGGGCAGCGGTGGAGTGGGCAAATCCGCGCTCACACTCCAGTTCATGTACGACGAGTTTGTGGAAGACTACGAGCCCACTAAAGCTGACAGCTACAGGAAGAAAGTGGTGctggatggagaggaggtgCAGATTGATATTCTGGACACGGCAGGGCAGGAAGACTACGCTGCCATTCGGGATAACTACTTCCGCAGCGGAGAGGGCTTCCTCTGTGTGTTCTCTATCACTGAACCCGAGTCTTTCGCTGCTACTGCTGACTTCAGAGAGCAGATCCTCAGAGTAAAGGAGGACGAGAACGTGCCCTTCCTGCTGGTCGGAAATAAGTCCGACCTGGAGGACCGGAGGCAGGTGGGAGCGGAGGAAGCCAAAGCCCGAGCCGATCAGTGGGGCGTCAGCTACGTGGAGACGTCCGCCAAAACCCGGGCCAACGTGGACAAGGTGTTTTTTGACCTCATGCGAGGAATCAGAGCCAGGAAAATGGAGGAGGGAAAGGAGAACgggaaaaataaaaggaagagCTTAATGAAGAGGATTCGGGAGAGatgttgtattttataatgACTGACTTTTTGCactgtgatgtcacttcctctcATTTCCAGTGTCTGTCTAATTACAGCTCATTTTATTTGACTTCTCTTTTTTGAAGGGTAACAAGGGACAGAAAATCAGGTATGTACACGTGTATGTACGTAGGACTTGGAACAAGTCTTAATGAACGTAAGACTGATATGAAgctatttcatttcattatttaaatgtaaataggTTGAGTCATATGACActactgtgttgttttttttgtttgtttgttttttcatgcACACTGAGGACCCAGCACTACCATGAAATAATCAGttaggctgctttcacattTGGCATGTTTTCCTAAACGTCAGTGCACAATTTACCTGTACTCCTACAGGAAGTGGATGCAAGGCAGGCGGAATGTGGACGCTTTTAAAAAGCAGTCCAGTCTACAGCTGTTTCCGAACTTTCCAGAAAAGCGCAGAATGACACAAAgaggcttttattttttttttttaacttcctgaccaatcaggctGCAGGTAAggcaagcaagaaaaacaaacatggaggacagaaTGCAGGAGGAAAAAACTTGTTGGCAAGTGAATATAAGGAGCACAATGGAAAATAATTCCTTTCTAATATTCCAACGTGTCTATTTTTAGGATGTTCATCAGTATGCATTGTGACGTCCCAGTTTAACTCTGGATGcagtcacatcacacaattAGCACCTCAAGTTCTCTTGAGTTTCTAcctccaaagctacagcgaacacaaacaacctcctcatcgcTAGAGTCACACCAGTCTTTATTTTATCTGTGATACTGAtcataataaatctaatctagatcGCTGATTctagatatattatatatatcttgTATATTAGCTCTGGAATACACTTCTTGtgggaaaaacaaatagaactcGACGACAACGGAGCCAACAAGTCTTCGTTCTTGTTACAgatttgtatgcctgaaatacccttaaaatatccCTTGACCATGTTTGGATCAATgccaaaatgtaatcagttcatCAAGTGGTAGCAAGTATACAAATCCTAGATTTTAACCATTCTTTTTTGAGGTATTACACTGACAAGAATTTCCTAAGGAAGGATCGATGGCAAAAATCCAGAAAACAGCTGTCGAGTTCCTGAGCACGAAGGCGTACTTAATGTCTCTGTATGCCAAAGAGGAAGGATGCTGTTGGAAGTAAAACTATTTGatcttgctgtgaccttgactctgctgggatcaattccaaaatctaatcagttcatctgctggaggcaggaaaaaaaaaaaaaaaaaaaaaaaacacacacaccaagtgtGAACGCAGCCTTAGTCCACTACATGGGTTTTTAGGTTATTTGGGTTCTGTGTGCACTTTAGAGAAAGGTATACAACAAACACAAGCATCCTCCTTACATGAGCTTTTAAAAAGCTGGTATTCATTTAAGTAAAGCTTTCTAACTGGAAAATCTATTCTCCAAAGTTTGATCCGTCACGAGGTCAAGGTTATGGGTGAAATATAAATTTGATAAAGATCAGTGAACTAGAACGAGTGCCTTGACTTAACACTTACAAAGTTCCTATTAGTGGTTTTTAAGAAGTGATACTAATTAAAGTTTGGGGTAGATCACTTATTACACGTTTCTGCTCACTTGCACACACTCGATTGGACACGCTTTAGTTATGGATCACCGTATTCAGCACCAAGCTTTTCTAAACCTTACTTACCTCAGCACACTCAGAGTGAGGTTAATGTGATAGGCGTAcctcgtgtgtgtttgtgtgtgcgaaGACAACAACCCTAAcactacatacatatatatggtgtaaaCACACTacttcattaaattaaatagatCCCTTGGAAACAGTAAACATATGCTGGGCCTGTGGGTCTCGGAGACATAGTGGTGGATATCACAAGCAACAATTATCAAAATTTTTATAGCTATTAGTCTGTTTGACTGAATCATTTTAATCCGaatctcaataactcaaaaacaaatagaatatttatttagaaagcAGTATGTTTCTCTAAATCTGTACCGAGAGGGTCCGTGGAAATAATTTTACAGTTAGGGTATGAAAAGTTTGAGAGCCGCTACTCTAGCTCATGCcttaatattatacagtatatatacagtactgtgcaaaagtcttgggcatgtgtaaagaaatgctgtaaagcaatgattccttcaaaaataatgaacgtttctaaaaataaaaatctaacacagagcagtaaacagtaataaactgaaCAAAGTCAATATTACATGTGACAAAtctttttcgttttaaaaatgcaccagtagtctcaggtatttgtgcagttttataatgaaattatcTGTtgagttttactgagcatcttagAGATTCTGCCACGGTTCTTCTCTGACTGACTGTTTTTGCAGATAATCCCcgacagccttcattatgtttttttggttgAAAAGTGGtgttttatgtaatatgtaactttcttcactgacatacaaaaatatttctgtattatagaattttttgttggaaaactaaaaaaaattactgacttAATcctgcagaagtcataaaataaacatctaagacaaaatttgtatttaaaaaataaggatgacttttgcacagtactgttcGAACCATCAGACTTTACCAGATTTTAACAGATTAGTTGTCttccctggaaaaaaaaaagcctgtatcAGTATGACTTAGAGGAATTTACCTAATACTCGTAATACTGATGCTAGTTAAAAGAGGAAACACAGTGActgattttttaattattcagtcTTTTTCATTATTAACCGCTTTagtcaaatcatatttttaaagtgcgtttcattttctttgtttatgtAATGGAAAgggctgttttgttttcttcttttccaaAATTGTGTGCAGGCTTTAAAGTTGCATCGCATGAGCTTAtaatgaactttaaaaaaaaaaaacagaaagaaagaaagtaaggaAAAGTGCTGCAGACCTCAGAACACCATCATCTCACAACATCCTCAACAGACTGATCTGGTTTTGAATGAGTGTTTATCTGTGGAATATATAATTACATGCGTCACGTGGGTCCGTCGTAACACGATGTACAGCTCTATATATTGAAAATTTGAATGATTTGAACGATCGTTTCTTGCTAACTGCGATTCACTAACAGTCCTGTATCGTTAGCGATGTTGGCACTTCAGTGTGGATTATTCCTGTAACCTGTGGATTGAACTTTTTCTAGCATAATAACTTTGCTGTGTGGTAACTGGTACTCGGGGTAATGACGCTGAAACACAGTGTGCTCTGCTGAAGCCCTTAGCTACTTTTTGTTCTGAAATGTTGTGTTAATTTATGCATCTGTCTAACCCAgagccaaaaaaattaaaatacaagagattttattataata
>XM_026941137.2
tttttttttttaaggatcaACTCCCAGTTCTGTACAAAACAAAGATGTCAAACTTGTCTCATAGCGAAGGGACaggaaaatcagaaaatattgTCATTTGGGATATTTTTACACGTTGTAGCTCTTGTGTATGTTCTGAGTAAATCTTATTTACACCGTTGTGTTTGGTATCTGGACTCTGGGGATATTTGGTTAGCCCTGGAGCTAAGTTTACACAAGAAGAATTAGGACGCAGGGGTTAGTTTGGCGCTTTTTAACAGACATTTCTTTAGCGTGTTAGCTCCTGGTACGAGCAGGGACGGGTTTTGGTGACGGATGAAACACTAAACAGTGTGAGTAAGCAGCTCTGGGCTTTACTGACTCATCTGTTTCTGatgtaaaagaagaaaattacCGGCACCAGCAGCGGTTCTGACCGGACATCATCGGCGCGTGACACTTGGACGCAGCTGCTTTCCTTCATTTCCATCATCAGTGAGGAGTTGTTGTCTGTATCATATTCAGGCCTTCCTACAGTCTGGATTCATCAATTTCCTTCGCTAGGCTGAGTAAGCTGAGTAAATCCCACCTCCTGTCTGGTTTACCTCCTTTGGCttgtttttggaaaaatggCAGCTAATAAACCCAAAGCGCCGAACTCTCTGGCCCTCCACAAAGTGATAATGGTGGGCAGCGGTGGAGTGGGCAAATCCGCGCTCACACTCCAGTTCATGTACGACGAGTTTGTGGAAGACTACGAGCCCACTAAAGCTGACAGCTACAGGAAGAAAGTGGTGctggatggagaggaggtgCAGATTGATATTCTGGACACGGCAGGGCAGGAAGACTACGCTGCCATTCGGGATAACTACTTCCGCAGCGGAGAGGGCTTCCTCTGTGTGTTCTCTATCACTGAACCCGAGTCTTTCGCTGCTACTGCTGACTTCAGAGAGCAGATCCTCAGAGTAAAGGAGGACGAGAACGTGCCCTTCCTGCTGGTCGGAAATAAGTCCGACCTGGAGGACCGGAGGCAGGTGGGAGCGGAGGAAGCCAAAGCCCGAGCCGATCAGTGGGGCGTCAGCTACGTGGAGACGTCCGCCAAAACCCGGGCCAACGTGGACAAGGTGTTTTTTGACCTCATGCGAGGAATCAGAGCCAGGAAAATGGAGGAGGGAAAGGAGAACgggaaaaataaaaggaagagCTTAATGAAGAGGATTCGGGAGAGatgttgtattttataatgACTGACTTTTTGCactgtgatgtcacttcctctcATTTCCAGTGTCTGTCTAATTACAGCTCATTTTATTTGACTTCTCTTTTTTGAAGGGTAACAAGGGACAGAAAATCAGGTATGTACACGTGTATGTACGTAGGACTTGGAACAAGTCTTAATGAACGTAAGACTGATATGAAgctatttcatttcattatttaaatgtaaataggTTGAGTCATATGACActactgtgttgttttttttgtttgtttgttttttcatgcACACTGAGGACCCAGCACTACCATGAAATAATCAGttaggctgctttcacattTGGCATGTTTTCCTAAACGTCAGTGCACAATTTACCTGTACTCCTACAGGAAGTGGATGCAAGGCAGGCGGAATGTGGACGCTTTTAAAAAGCAGTCCAGTCTACAGCTGTTTCCGAACTTTCCAGAAAAGCGCAGAATGACACAAAgaggcttttattttttttttttaacttcctgaccaatcaggctGCAGGTAAggcaagcaagaaaaacaaacatggaggacagaaTGCAGGAGGAAAAAACTTGTTGGCAAGTGAATATAAGGAGCACAATGGAAAATAATTCCTTTCTAATATTCCAACGTGTCTATTTTTAGGATGTTCATCAGTATGCATTGTGACGTCCCAGTTTAACTCTGGATGcagtcacatcacacaattAGCACCTCAAGTTCTCTTGAGTTTCTAcctccaaagctacagcgaacacaaacaacctcctcatcgcTAGAGTCACACCAGTCTTTATTTTATCTGTGATACTGAtcataataaatctaatctagatcGCTGATTctagatatattatatatatcttgTATATTAGCTCTGGAATACACTTCTTGtgggaaaaacaaatagaactcGACGACAACGGAGCCAACAAGTCTTCGTTCTTGTTACAgatttgtatgcctgaaatacccttaaaatatccCTTGACCATGTTTGGATCAATgccaaaatgtaatcagttcatCAAGTGGTAGCAAGTATACAAATCCTAGATTTTAACCATTCTTTTTTGAGGTATTACACTGACAAGAATTTCCTAAGGAAGGATCGATGGCAAAAATCCAGAAAACAGCTGTCGAGTTCCTGAGCACGAAGGCGTACTTAATGTCTCTGTATGCCAAAGAGGAAGGATGCTGTTGGAAGTAAAACTATTTGatcttgctgtgaccttgactctgctgggatcaattccaaaatctaatcagttcatctgctggaggcaggaaaaaaaaaaaaaaaaaaaaaaaacacacacaccaagtgtGAACGCAGCCTTAGTCCACTACATGGGTTTTTAGGTTATTTGGGTTCTGTGTGCACTTTAGAGAAAGGTATACAACAAACACAAGCATCCTCCTTACATGAGCTTTTAAAAAGCTGGTATTCATTTAAGTAAAGCTTTCTAACTGGAAAATCTATTCTCCAAAGTTTGATCCGTCACGAGGTCAAGGTTATGGGTGAAATATAAATTTGATAAAGATCAGTGAACTAGAACGAGTGCCTTGACTTAACACTTACAAAGTTCCTATTAGTGGTTTTTAAGAAGTGATACTAATTAAAGTTTGGGGTAGATCACTTATTACACGTTTCTGCTCACTTGCACACACTCGATTGGACACGCTTTAGTTATGGATCACCGTATTCAGCACCAAGCTTTTCTAAACCTTACTTACCTCAGCACACTCAGAGTGAGGTTAATGTGATAGGCGTAcctcgtgtgtgtttgtgtgtgcgaaGACAACAACCCTAAcactacatacatatatatggtgtaaaCACACTacttcattaaattaaatagatCCCTTGGAAACAGTAAACATATGCTGGGCCTGTGGGTCTCGGAGACATAGTGGTGGATATCACAAGCAACAATTATCAAAATTTTTATAGCTATTAGTCTGTTTGACTGAATCATTTTAATCCGaatctcaataactcaaaaacaaatagaatatttatttagaaagcAGTATGTTTCTCTAAATCTGTACCGAGAGGGTCCGTGGAAATAATTTTACAGTTAGGGTATGAAAAGTTTGAGAGCCGCTACTCTAGCTCATGCcttaatattatacagtatatatacagtactgtgcaaaagtcttgggcatgtgtaaagaaatgctgtaaagcaatgattccttcaaaaataatgaacgtttctaaaaataaaaatctaacacagagcagtaaacagtaataaactgaaCAAAGTCAATATTACATGTGACAAAtctttttcgttttaaaaatgcaccagtagtctcaggtatttgtgcagttttataatgaaattatcTGTtgagttttactgagcatcttagAGATTCTGCCACGGTTCTTCTCTGACTGACTGTTTTTGCAGATAATCCCcgacagccttcattatgtttttttggttgAAAAGTGGtgttttatgtaatatgtaactttcttcactgacatacaaaaatatttctgtattatagaattttttgttggaaaactaaaaaaaattactgacttAATcctgcagaagtcataaaataaacatctaagacaaaatttgtatttaaaaaataaggatgacttttgcacagtactgttcGAACCATCAGACTTTACCAGATTTTAACAGATTAGTTGTCttccctggaaaaaaaaaagcctgtatcAGTATGACTTAGAGGAATTTACCTAATACTCGTAATACTGATGCTAGTTAAAAGAGGAAACACAGTGActgattttttaattattcagtcTTTTTCATTATTAACCGCTTTagtcaaatcatatttttaaagtgcgtttcattttctttgtttatgtAATGGAAAgggctgttttgttttcttcttttccaaAATTGTGTGCAGGCTTTAAAGTTGCATCGCATGAGCTTAtaatgaactttaaaaaaaaaaaacagaaagaaagaaagtaaggaAAAGTGCTGCAGACCTCAGAACACCATCATCTCACAACATCCTCAACAGACTGATCTGGTTTTGAATGAGTGTTTATCTGTGGAATATATAATTACATGCGTCACGTGGGTCCGTCGTAACACGATGTACAGCTCTATATATTGAAAATTTGAATGATTTGAACGATCGTTTCTTGCTAACTGCGATTCACTAACAGTCCTGTATCGTTAGCGATGTTGGCACTTCAGTGTGGATTATTCCTGTAACCTGTGGATTGAACTTTTTCTAGCATAATAACTTTGCTGTGTGGTAACTGGTACTCGGGGTAATGACGCTGAAACACAGTGTGCTCTGCTGAAGCCCTTAGCTACTTTTTGTTCTGAAATGTTGTGTTAATTTATGCATCTGTCTAACCCAgagccaaaaaaattaaaatacaagagattttattataata

Function

symbol description
ralaa Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Predicted to be involved in Ras protein signal transduction and regulation of exocytosis. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in lens and solid lens vesicle. Orthologous to human RALA (RAS like proto-oncogene A).
rala Enables several functions, including Edg-2 lysophosphatidic acid receptor binding activity; enzyme binding activity; and guanyl ribonucleotide binding activity. Involved in several processes, including actin cytoskeleton reorganization; membrane raft localization; and positive regulation of cellular component organization. Located in several cellular components, including cell surface; cleavage furrow; and focal adhesion. Colocalizes with endocytic vesicle. Biomarker of pancreatic ductal adenocarcinoma.

NR:

description
PREDICTED: ras-related protein Ral-A-like

GO:

id name namespace
GO:0007265 Ras protein signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005886 plasma membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07834 RALA; Ras-related protein Ral-A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941136.2 False 4565 mRNA 0.39 5 2718759 2728068
XM_026941137.2 True 4652 mRNA 0.39 6 2718759 2728068

Neighbor

gene id symbol gene type direction distance location
c21h7orf25 c20h7orf25,cunh7orf25,zgc:55781 coding upstream 1061 2714439 ~ 2717698 (+)
si:dkey-181m9.8 LOC108280771 coding upstream 63611 2645531 ~ 2655148 (+)
trnae-cuc_41 NA coding upstream 224456 2494232 ~ 2494303 (+)
dsela dsel coding upstream 393279 2319874 ~ 2325480 (+)
tmx3a LOC108280544 coding upstream 399892 2298126 ~ 2318867 (+)
plcd1b LOC108280636 coding downstream 80359 2808427 ~ 2834932 (+)
hhatla hhatl,LOC108435490,LOC103033016,LOC107688529,LOC107722653,LOC107689424 coding downstream 132217 2860285 ~ 2871256 (+)
klhl40a LOC108280764,LOC108435482,LOC103032700 coding downstream 144461 2872529 ~ 2878715 (+)
bmi1b LOC108280883,LOC103034194,LOC108444227,LOC107689401,LOC107585379 coding downstream 247578 2975646 ~ 2985302 (+)
nebl nebl,LOC107722518,LOC107718172,LOC107688530 coding downstream 286418 3014486 ~ 3019463 (+)
G313443 NA non-coding upstream 44113 2674433 ~ 2674646 (+)
G313052 NA non-coding upstream 595325 2116324 ~ 2123434 (+)
G313053 NA non-coding upstream 742044 1974099 ~ 1976715 (+)
G313016 NA non-coding upstream 823812 1894702 ~ 1894947 (+)
LOC113543035 NA non-coding upstream 1056566 1624563 ~ 1662193 (+)
LOC117599939 NA non-coding downstream 3147 2731215 ~ 2736588 (+)
G313465 NA non-coding downstream 7051 2735119 ~ 2735384 (+)
G313494 NA non-coding downstream 61174 2789242 ~ 2789496 (+)
LOC113543325 NA non-coding downstream 214419 2942487 ~ 2945207 (+)
G313607 NA non-coding downstream 347981 3076049 ~ 3076370 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other upstream 42911 2675281 ~ 2675848 (+)
LOC117599997 LOC108280771,LOC108435500 other upstream 56360 2655200 ~ 2662399 (+)
G313112 zswim5 other upstream 533082 2181979 ~ 2185677 (+)
tgs1 tgs1 other upstream 573522 2133150 ~ 2145237 (+)
c21h5orf22 c20h5orf22,LOC107714825 other upstream 741450 1965740 ~ 1977309 (+)
trnat-agu_12 NA other downstream 161247 2889315 ~ 2889388 (+)
LOC113543208 LOC108280571,LOC108435486 other downstream 695499 3423567 ~ 3489367 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other downstream 1864372 4592440 ~ 4762095 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other downstream 2059780 4787848 ~ 4789835 (+)
LOC113543089 mbp other downstream 2173402 4901470 ~ 4958121 (+)

Expression


Co-expression Network