cux1b (cux1,LOC106581515,LOC105006988)


Basic Information

Item Value
gene id cux1b
gene name cux1,LOC106581515,LOC105006988
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 4376994 ~ 4533974 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941172.2
CTCCGTGGCACCGTTCAATACAGAGTCAGGTTCGCTGTTCGATCAACTCCATTCCGCGCCGCTGTTCGATAAGCGAAGGCCAAGTTCGATTACTCCGCTCCGGGTTTTACGCGCTTCCCgctctgttttttcccccctctcgcGAACTCCGGCCCCTCGCGCTCTCTCTATCAGCCTCTCACTCCGTCTCAATATGTCTCAAGATGGCGGCCAATGCGGGATCGATGTTTCAATATTGGAAGCGCTTTGATTTACAGCAACTGCAGAGAGAACTAGACACCACTGCCACACTACTGGCCAACAGACAAGATGAGAGCGAACAGTCCAGGAAAAAGCTCATCGACCAGAGCCGCGAATTtaagaaaaacacaccagaGGATCTGCGCAAGCAGGTAGCTCCGCTGCTGAAGAGTTTTCAGGCCGAGatTGATGCATTGAGTAAAAGAAGTAAAGAAGCAGAGGCTGCCTTCTTGAACGTCTATAAGAAACTGATCGATGTcccagATCCCGTCCCCGTGTTGGAGCTCGGCCAGCAGCTGCAGCTGAAGGTACAGCGGATGCACGACATTGAGACGGAGAACCAGAAACTGCGTGAGACGCTGGAGGACTACAACAAAGAGTTCGCCGAGGTCAAGAACCAGGAGGTCACTATCAAAGCACTTAAAGAGAAGATCCGGGAATATGAACAGACCCTGAAGAACCAGGCGGAGAACCTGGCGCAGGAGAAAGAGCAGCAGCTCCACAACGACtatgcagagaaagagagGAAATTGCAAGAGTCGCATGAATCAATGGCCTCCAGGTTGGAAGAGGCAGAACACAAAGCTCAGAATCTACAGACAGCACTTGAAACCACTCAGGCAGAGCTGTTCGACCTGAAGACCAAGTACGATGAGGAGTCCACGGCAAAGGCCGATGAGATCGAGATGGTCATGACCGATCTGGAGCGAGCCAATCAGAGAGCGGAGACAGCCGAGCGAGAGGCTGAGTCACTGAGGGAGCAGCTCACGTCGGCTAACAAGTCCCTGCAGCTGGCCACACAGATCCAGAAAGCTCCAGATATGgagcaggCGGTGGAGGTGGTGTCGCGCTCGAGTCTGGAGGCCGAGTTGAGCGCTAAGGAGCGGGAGATGGTGCAGCTGGTGGAGGACGTGCAGAGACTGCAGGCCAGTCTGGCCAAACTGCGCGAGAACTCCTCCACCCAAATCAGCCAGCTAGAGCAGCAACTCAGTGCCAAGAGCGCCACACTCAAGCAACTGGAGGAGAAGTTGCAGGAGCAGGCTGACTACGAGGAGGTGAAGAAAGAGCTGAGTATCCTGAAGTCCATGGAGTTTGGGCCGTCTGACAGTGCTACAGCACAGGACTCATCTAAGCCGCTGGAGGTGTTACTGCTGGAGAAGAACCGCAGTCTTCAGTCTGAGAGCGCTTCACTCCGCATCGCCAACACCGAGCTGAGCGGACGCTACACTGCACTTCAGGTGGAGTTTTCAGCCGCAGTGAAGACCAGCGCTGAGCAGAAGGAGCTCATCTTCAAACTGGAGCATGACCTGAGCACCATCCAGGCCATGTCCTCCCTGTCACGCCCCGACGCTGAGGGGGCGGACCTGAGCGGCATGGACCGAATCCCTGAGCCTATTAAAGAGGCCACGGCTCTGttcacaggAGTGGTTGGCTCTTCTCAGGCTGAGCTTCCTCAGGGTCAGATGGACTCTCTGCTGTCCATCATCtccagccagagagagagattccgGGCTCGCAACCAGGAACTGGAGACTGAGAGTCGTTCTCTGCAGCAGACTCTGCAGGCCCTGCAGTCAGAGCTGGACAGTCTACGCGCTGACAACATCAAACTGTATGAGAAGATCAAGTTCCTGCAGAGTTACCCAACCAGAagcggAGGAACTGATGACACTGTGATGCGCTACTCTTCACAGTACGAGGAGAGGCTTGACCCCTTTGCCTCCTTCAGCAAGAAGGAGCGCCAGAGACGATACCTGAGCCTCAGCCCATGGGACAAGGCCACCCTCAGCTTGGGTCGTGTCATCCTGTCCAACAAGACGGCCAGAACTATTGCTTTCTTCTACACTCTCTTCCTCCACTGCCTGGTGTTTCTGGTACTCTATAAAACAGCCTGGAGTGAGAGCATTGGCCGTGACTGTGCTGCATACTGTGCTAAGAAGTACTCGGACCACCTGCATCGTTTCCATGAGAACGGTGACAATGCCGATATGTGGCAGTGAAACAGCGCTACAGTGAAAGCTGACGGTCTTCATGGTTTCTCTACTCTTTCGCTcaaatatataagaatataactTAGAATTAGTGCTGTGTATCctaaaaacatgttattcagACACAACCCAGTGCAAACGCTTTAATATCTAGAATTGGATTGTCGCTTTGGATTTCTGAACGAAGCCTGATTgcagccactagagggcgcaCTTGGTTTGTTAGCATctagattatatacagtataaatcagTGTGAAGGAGCATTTCTGTGCATGCTAGCTGAGTCATAAATCTAAATCAAAGAAAATATCTATAATTCTGCTTTGCTTTACAGTGGGGACCAGTTTATGTCTGAAttattctttcttccttttcttctttagGAACATGAAATGAATAGGTGATGAAATGAGATGGTTTAAATTTAGTCGAAtccatatatattattttatctttaaaacatttagcaATATTATAtgcttccatttttttcctattcCTTTGAATCCgaaatcatttaaatcattaacaGGGTTATGGGTTTACTACAGTATGATATTGATTTAAATTCTATGCAGAAGCCTAATTAgtagaaattaataaatatattcaagTTGTGGAAAGTTAAATCTAGGATtaactgtgttgtgttgttacagATCGAGGAAAGCTTGCTAGCTGTAGATCATCTGCTCTTGTGTTTTGTTCAACACAATACATCATGTTATGATCTAAAGTGTGTAATACAGCTGTGAGCATCCTCCATTTCCTGTTAGTGCTATGTTTGATTGGCATGtctctgttttgctttttctcttattaaaacTGTCGAGCATCTA

Function

symbol description
cux1 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in positive regulation of dendrite morphogenesis and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within animal organ development and negative regulation of transcription by RNA polymerase II. Located in Golgi apparatus and nucleoplasm.

NR:

description
PREDICTED: protein CASP-like isoform X2

GO:

id name namespace
GO:0006891 intra-Golgi vesicle-mediated transport biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09313 CUTL; homeobox protein cut-like

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941172.2 True 3073 mRNA 0.49 23 4376994 4533974

Neighbor

gene id symbol gene type direction distance location
LOC113543315 LOC108280769,LOC108423999 coding upstream 26450 4315743 ~ 4350544 (+)
wdr53 wdr53 coding upstream 68942 4300799 ~ 4308052 (+)
LOC113543011 LOC108280892 coding upstream 86884 4283167 ~ 4290110 (+)
LOC113543038 LOC108280160,LOC108424050 coding upstream 100036 4267090 ~ 4276958 (+)
LOC113543045 LOC108280189 coding upstream 113708 4258365 ~ 4263286 (+)
LOC113543006 sh2b2,LOC107573094 coding downstream 12161 4546135 ~ 4576648 (+)
bud23 wbscr22 coding downstream 49053 4583027 ~ 4590956 (+)
LOC113543019 zadh2 coding downstream 498275 5032249 ~ 5036445 (+)
rabgef1l LOC108280803 coding downstream 526056 5060030 ~ 5070433 (+)
LOC113543113 NA coding downstream 536644 5070618 ~ 5073139 (+)
G314364 NA non-coding upstream 81920 4294865 ~ 4295074 (+)
G314362 LOC108280893 non-coding upstream 83265 4290254 ~ 4293729 (+)
G314222 NA non-coding upstream 376680 3996502 ~ 4000314 (+)
LOC117599982 NA non-coding upstream 481309 3888027 ~ 3895685 (+)
G313990 NA non-coding upstream 530899 3845857 ~ 3846095 (+)
G314609 NA non-coding downstream 245964 4779938 ~ 4780145 (+)
G314628 NA non-coding downstream 266678 4800652 ~ 4801103 (+)
G314636 NA non-coding downstream 312218 4846192 ~ 4846717 (+)
LOC117599956 NA non-coding downstream 350236 4884210 ~ 4893278 (+)
G314675 NA non-coding downstream 444047 4978021 ~ 4978966 (+)
LOC113543208 LOC108280571,LOC108435486 other upstream 887627 3423567 ~ 3489367 (+)
trnat-agu_12 NA other upstream 1487606 2889315 ~ 2889388 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other upstream 1701146 2675281 ~ 2675848 (+)
LOC117599997 LOC108280771,LOC108435500 other upstream 1714595 2655200 ~ 2662399 (+)
G313112 zswim5 other upstream 2191317 2181979 ~ 2185677 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other downstream 58466 4592440 ~ 4762095 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other downstream 253874 4787848 ~ 4789835 (+)
LOC113543089 mbp other downstream 367496 4901470 ~ 4958121 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other downstream 553865 5087839 ~ 5091273 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other downstream 667047 5201021 ~ 5216591 (+)

Expression


Co-expression Network