plcd1b (LOC108280636)


Basic Information

Item Value
gene id plcd1b
gene name LOC108280636
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 2808427 ~ 2834932 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941204.2
CCCCGAGAGTGAGATATGAGCTCAGCACTTCCCCTGCTTGTGTTATTCACTGGGGATCCTGTCAGGAAAAAGGGCCGACATGCAGTGCATACGGAAGCAGCCGAAAAGGAGCAAGTCGCAGGAGTTACTTCATGATGAGCAGAGCAAGAAAATCACCAGCGTTAACCTGAAGCTGCTGGGCATGGATGGAGATCCGGATTTGAATTTTCTTCTGAACGGTGCAGAGCTCGTGAAGGTTCGCTCGGGCTCGTGGAGGAAGGTGCGATTCTACAAGCTGCAGGAGGACTGCAAGACCGTGTGGCACGAGTCCAAAAAAACCCTGCGGCCAAAGCACACCTTTTCCATTGAGGATGTAGAGTGTGTGCGCTCTGGCCGGCACACGGAGGGTCTCAGGAAGTACACAGACGAGGCGTTGGAATCTCGGGCATTCTCCATCCTGTTCAAGGGCCGCCACAAAAACCTAGACCTGATCGCCACCACCGAGGAGGAGGCCAAGCACTGGGTGTCAGGCCTGGATAAGATCATCTCCAACATGAGCAAGCTCAGCCAACAACAGAGGACTGAACACTGGATCTTCAACTGTTTGCGTAAGGCTGACATAAACTGTGACAAGAAGATGAGTCCAGAAGAAGTGAAGCGCTTCCTGCAGGACATCAACATAGAAGTGGACAATGAATACGTCAAGTTGCTATTtgaaAAATGTGATCAGTCCAAATCTGGCTTACTGGAGGGAAAAGAAATTAAGCACTTCTATGAGATCCTGACTGACAGGGAAGAGATCGGCGTAATCTACGGAACGTATGCGAAAACTGAGGGACTAATGAGTGCTGCCAACCTGCTGAACTTCCTGACAAAGGAGCAGAGGGAGAAGGTGGACCTGACTCACGCCACACAGCTCATCGAGAAATATGAAGTAGATGAAACGGCCAAAGCAAAGCAGCTGATGACGAAAGACGGCTTTCTGATGTTCCTGCACCAGCCCGAAGTGCTGATCATGAGCCCGGCCCATAAGAGTGTGTACCAGGACATGAGCCAGCCATTAAACCACTACTTTATCTCCTCCTCTCACAACACGTACCTTCTGAAAGACCAGCTTAAAGGCCCAAGCAGCACTGAGGGCTACATACGAGCGCTAATGAAGGGCTGTCGCTGCGTGGAGCTGGACGTCTGGGACGGCTCAGACGGGGAGCCGATTATCTACCATGGCTACACGTTGACCTCCAAGATCCTCTTTAAGGATGCCATCCAAGAAATTAAGGAGTATGCCTTTAAGACGTCAGAGTACCCAGTGATCCTGTCCCTGGAGAACCACTGCAGTGTAGACCAGCAGATCCTGATGGCCAAGCACATGCACTCCATCCTGGGTAGTGCTCTGATCACCAAACCCCTGGGAGAACACATGCCCACAGCGTTGCCCTCTCCAGAGGAGCTGAAGGGTCGGTTTCTGATCAAAGGCAAATGCCTGAATAAACTGGAGGATTACTTCTCAGACCAGGCAGCTACAAAAGAAGACGAGTCTgtgacagaagaagaagatgcccgtgatgatgatgatgaggatcaTTCTGAAAACAATAAGAAGTCAAAGACACTGAAGCTAGCTAAAGAGCTCTCGGACCTCGCAATCTACTGCAAAAGTGTCAAGTTCCAAGGATTTGGGCACGCGCGGACTCATCAGTCCTTTTACGAGATGTCCTCTTTTAAAGAATGGGATGCACTGAATTTTGCAGAGAAGTCAGcaaatgAATTCATTCGTCATAATGTGGACAAACTGAGTAGAATTTACCCCTCTGGAGCAGTAAGGACAAATTCCTCCAACTTCAACCCCGTGCCCATGTGGAACTCCGGCTGCCAAATTGTGGCCCTCAACTTTCAGACGCCGTGCGCAGAGATGGATCTGAACCAGGGCCTGTTTAGCCAAAATGGACAGAGCGGCTACATCCTGAAGCCGACCTACCTCCGAGAAAAAGAGTCTGAGTTTGACCCCATCACGCTCATCCGAGGACCATGGCTCAAGCACATCGAGTTCCATGTGATGGTGATCTCAGCACAGCAGTTACCCAAAATGAGTGAGAAGTCGCTATCCATCGTAGATCCCCTGGTGCGAGTGGAGATCCACGGCGTGCCTGCGGACACGTCCAAAAGAGAGACGCAGCACATTCAGAACAACGGTTTCAACCCCATGTGGAACGAGAATTTCCAGTTTGACCTATACGTGCCTGAACTTGCGCTGGTGCGCTTCGTTGTGGAGGATTATGATAGCGTGTCCAGCAACGACTTCATCGGCCAGTGCACAGTGCCGTTCACCAGCCTACAGACCGGATATCGTCATGTGCCGCTGTACAACCAGAATGGAGACCTCCTCTCCTCAGCTCAACTTTTTGTTCACCTCATGGCTGTGGACGCAGAATAAGTCTAAAGACCATTATTCCAGCGCTTCCCATCCAGTCTAAAAACCTCAGCCTGGCTGAGGAGGAAAGAGCTGAACACAAGACTCAGGTTGGAGCTGGACcagaacagaacaaaaactGAGCAATAATTTAACCAGTGAGACACTATAAGGCTTTAAATCTACTCATAACATCCACCACGGTCAACACTAAGCAACTAAACATGTAGCTGTAGTACAATAACCTGACGAGTTAATAAACTagattaatattttcttatagatgtttttagatgtttttaaagaGTGCTACTTGGCTTCTAATACATTCCACTATTTAAGatttta
>XM_026941205.2
GGAGCACCCTTGCAACACAGACCGGGGACTCCAGAGGGCGGCGCGGGTTTTCAGCAGGTTTAAACACAGCTCTGTGGACAAGGTCGAGCTTTGTAGAACTTGTCAACTTCCCGGAGCACAAAGTCATATAACTTTGGCTTCTTTGTCTTATAAATTTTTTAGCAAAAACCGAATTCTGCTGCGTTTTCTGAGGAGAGAGAATTAGCGCGTTAGCTGCTCTGAGGTAACTGCTGACGCCTTCATCAGCCtccttcttcttgtttttccgTCAGTATTTCTGACAGCATGGGCTCCAACGGCACAGCAACACCACAAGGCATGGATGGAGATCCGGATTTGAATTTTCTTCTGAACGGTGCAGAGCTCGTGAAGGTTCGCTCGGGCTCGTGGAGGAAGGTGCGATTCTACAAGCTGCAGGAGGACTGCAAGACCGTGTGGCACGAGTCCAAAAAAACCCTGCGGCCAAAGCACACCTTTTCCATTGAGGATGTAGAGTGTGTGCGCTCTGGCCGGCACACGGAGGGTCTCAGGAAGTACACAGACGAGGCGTTGGAATCTCGGGCATTCTCCATCCTGTTCAAGGGCCGCCACAAAAACCTAGACCTGATCGCCACCACCGAGGAGGAGGCCAAGCACTGGGTGTCAGGCCTGGATAAGATCATCTCCAACATGAGCAAGCTCAGCCAACAACAGAGGACTGAACACTGGATCTTCAACTGTTTGCGTAAGGCTGACATAAACTGTGACAAGAAGATGAGTCCAGAAGAAGTGAAGCGCTTCCTGCAGGACATCAACATAGAAGTGGACAATGAATACGTCAAGTTGCTATTtgaaAAATGTGATCAGTCCAAATCTGGCTTACTGGAGGGAAAAGAAATTAAGCACTTCTATGAGATCCTGACTGACAGGGAAGAGATCGGCGTAATCTACGGAACGTATGCGAAAACTGAGGGACTAATGAGTGCTGCCAACCTGCTGAACTTCCTGACAAAGGAGCAGAGGGAGAAGGTGGACCTGACTCACGCCACACAGCTCATCGAGAAATATGAAGTAGATGAAACGGCCAAAGCAAAGCAGCTGATGACGAAAGACGGCTTTCTGATGTTCCTGCACCAGCCCGAAGTGCTGATCATGAGCCCGGCCCATAAGAGTGTGTACCAGGACATGAGCCAGCCATTAAACCACTACTTTATCTCCTCCTCTCACAACACGTACCTTCTGAAAGACCAGCTTAAAGGCCCAAGCAGCACTGAGGGCTACATACGAGCGCTAATGAAGGGCTGTCGCTGCGTGGAGCTGGACGTCTGGGACGGCTCAGACGGGGAGCCGATTATCTACCATGGCTACACGTTGACCTCCAAGATCCTCTTTAAGGATGCCATCCAAGAAATTAAGGAGTATGCCTTTAAGACGTCAGAGTACCCAGTGATCCTGTCCCTGGAGAACCACTGCAGTGTAGACCAGCAGATCCTGATGGCCAAGCACATGCACTCCATCCTGGGTAGTGCTCTGATCACCAAACCCCTGGGAGAACACATGCCCACAGCGTTGCCCTCTCCAGAGGAGCTGAAGGGTCGGTTTCTGATCAAAGGCAAATGCCTGAATAAACTGGAGGATTACTTCTCAGACCAGGCAGCTACAAAAGAAGACGAGTCTgtgacagaagaagaagatgcccgtgatgatgatgatgaggatcaTTCTGAAAACAATAAGAAGTCAAAGACACTGAAGCTAGCTAAAGAGCTCTCGGACCTCGCAATCTACTGCAAAAGTGTCAAGTTCCAAGGATTTGGGCACGCGCGGACTCATCAGTCCTTTTACGAGATGTCCTCTTTTAAAGAATGGGATGCACTGAATTTTGCAGAGAAGTCAGcaaatgAATTCATTCGTCATAATGTGGACAAACTGAGTAGAATTTACCCCTCTGGAGCAGTAAGGACAAATTCCTCCAACTTCAACCCCGTGCCCATGTGGAACTCCGGCTGCCAAATTGTGGCCCTCAACTTTCAGACGCCGTGCGCAGAGATGGATCTGAACCAGGGCCTGTTTAGCCAAAATGGACAGAGCGGCTACATCCTGAAGCCGACCTACCTCCGAGAAAAAGAGTCTGAGTTTGACCCCATCACGCTCATCCGAGGACCATGGCTCAAGCACATCGAGTTCCATGTGATGGTGATCTCAGCACAGCAGTTACCCAAAATGAGTGAGAAGTCGCTATCCATCGTAGATCCCCTGGTGCGAGTGGAGATCCACGGCGTGCCTGCGGACACGTCCAAAAGAGAGACGCAGCACATTCAGAACAACGGTTTCAACCCCATGTGGAACGAGAATTTCCAGTTTGACCTATACGTGCCTGAACTTGCGCTGGTGCGCTTCGTTGTGGAGGATTATGATAGCGTGTCCAGCAACGACTTCATCGGCCAGTGCACAGTGCCGTTCACCAGCCTACAGACCGGATATCGTCATGTGCCGCTGTACAACCAGAATGGAGACCTCCTCTCCTCAGCTCAACTTTTTGTTCACCTCATGGCTGTGGACGCAGAATAAGTCTAAAGACCATTATTCCAGCGCTTCCCATCCAGTCTAAAAACCTCAGCCTGGCTGAGGAGGAAAGAGCTGAACACAAGACTCAGGTTGGAGCTGGACcagaacagaacaaaaactGAGCAATAATTTAACCAGTGAGACACTATAAGGCTTTAAATCTACTCATAACATCCACCACGGTCAACACTAAGCAACTAAACATGTAGCTGTAGTACAATAACCTGACGAGTTAATAAACTagattaatattttcttatagatgtttttagatgtttttaaagaGTGCTACTTGGCTTCTAATACATTCCACTATTTAAGatttta

Function

NR:

description
PREDICTED: 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1-like isoform X2

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0005509 calcium ion binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0004435 phosphatidylinositol phospholipase C activity molecular_function

KEGG:

id description
K05857 PLCD; phosphatidylinositol phospholipase C, delta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941204.2 False 2737 mRNA 0.49 15 2817742 2834932
XM_026941205.2 True 2874 mRNA 0.49 15 2808427 2834932

Neighbor

gene id symbol gene type direction distance location
ralab rala,ralaa,LOC107565693,LOC103042957 coding upstream 80359 2718759 ~ 2728068 (+)
c21h7orf25 c20h7orf25,cunh7orf25,zgc:55781 coding upstream 90729 2714439 ~ 2717698 (+)
si:dkey-181m9.8 LOC108280771 coding upstream 153279 2645531 ~ 2655148 (+)
trnae-cuc_41 NA coding upstream 314124 2494232 ~ 2494303 (+)
dsela dsel coding upstream 482947 2319874 ~ 2325480 (+)
hhatla hhatl,LOC108435490,LOC103033016,LOC107688529,LOC107722653,LOC107689424 coding downstream 25353 2860285 ~ 2871256 (+)
klhl40a LOC108280764,LOC108435482,LOC103032700 coding downstream 37597 2872529 ~ 2878715 (+)
bmi1b LOC108280883,LOC103034194,LOC108444227,LOC107689401,LOC107585379 coding downstream 140714 2975646 ~ 2985302 (+)
nebl nebl,LOC107722518,LOC107718172,LOC107688530 coding downstream 179554 3014486 ~ 3019463 (+)
nrn1b LOC108280273 coding downstream 245084 3080016 ~ 3082751 (+)
G313494 NA non-coding upstream 18931 2789242 ~ 2789496 (+)
LOC117599939 NA non-coding upstream 71839 2731215 ~ 2736588 (+)
G313465 NA non-coding upstream 73043 2735119 ~ 2735384 (+)
G313443 NA non-coding upstream 133781 2674433 ~ 2674646 (+)
G313052 NA non-coding upstream 684993 2116324 ~ 2123434 (+)
LOC113543325 NA non-coding downstream 107555 2942487 ~ 2945207 (+)
G313607 NA non-coding downstream 241117 3076049 ~ 3076370 (+)
G313796 NA non-coding downstream 464166 3299098 ~ 3299306 (+)
G313853 NA non-coding downstream 689377 3524309 ~ 3524518 (+)
G313949 NA non-coding downstream 938138 3773070 ~ 3819909 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other upstream 132579 2675281 ~ 2675848 (+)
LOC117599997 LOC108280771,LOC108435500 other upstream 146028 2655200 ~ 2662399 (+)
G313112 zswim5 other upstream 622750 2181979 ~ 2185677 (+)
tgs1 tgs1 other upstream 663190 2133150 ~ 2145237 (+)
c21h5orf22 c20h5orf22,LOC107714825 other upstream 831118 1965740 ~ 1977309 (+)
trnat-agu_12 NA other downstream 54383 2889315 ~ 2889388 (+)
LOC113543208 LOC108280571,LOC108435486 other downstream 588635 3423567 ~ 3489367 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other downstream 1757508 4592440 ~ 4762095 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other downstream 1952916 4787848 ~ 4789835 (+)
LOC113543089 mbp other downstream 2066538 4901470 ~ 4958121 (+)

Expression


Co-expression Network