trpa1a (LOC108280835,LOC108435699)


Basic Information

Item Value
gene id trpa1a
gene name LOC108280835,LOC108435699
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 946792 ~ 965617 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941207.2
CCAGCCGCTCACAAGCTGAACAGCCGGACAGGAACAGCGGCTCTCACCAGACGCTATGTGTCCGTCCCGGTCTCAGCCGAAGTTCACTCACGAATACCAGTTTCTGATGGACATGGACGGAAACGGCTGCACGTCAATGAACGTCTTTAAGTGGGCTTTGGAGGGCAACGTCCCGGCACTGGAGGGCGACTCGAATAACCTGAGCATGCGGGACGACGGCGGCGCCGCCCCGCTTCACTACGCCGCCTCCAAAGGCCACATCCGAGTCATCAACCTCATCGTACAGCTCGCCGGCTCTCAGGagctggACATTGTGGATGATGAAGGAAACACTCCTCTGCACTGGGCCGTTCAGCAGGATCAGAGTGGAAGCTGTTTGGCTCTGCTGAGTCTCGGAGCGAATCCTAACATCCTGAACAAAGCGGCTCTCTCACCACTGCACCTCGCCGTCAGCCTCAGACACAACCACATAGTGGAGcaactcctgacacacagagagacgaATGTGAACCTGGAAGGCGATCTGGGAAACACACCTTTAACTCTGGCTGCTTCAGTGGACAACCATGAGGCGCTTCTCATACTGCACAGGCACGGCGCCAAACTGTGCTGCCAGAACAAGCTGGGTCACTTGGCCATCCACGCCGCCGCCTTCGCAGGAGCCAAGAGGTCCATGGAGGTGATTCTCCAAAAAGGAGAGGAGAAAGGCGTGCCCATTGAGAGACACATAAACTACGTGGACAAATCCATCAGCAGTCCTCTTCACCTGGCCGTACGTGGAGGAAACCTCGAGGTCATCAAGCTCTGCATCGCTCACGGCGCCAAAATCGACCAACAGCAGTGTGATAAATCCACCGCTCTCCACTTTGCGTGCACTCAGGGAGCCACGGAAGCCGTGAAGGTGATGCTCCAGGCGTACGAGAGAGtgtgtgacatcatcaacatcaccGACGGAGCGTTCCAAACACCgctacataaGGCggccatttttgaccactatgAACTGGTGGAGTATCTAATCTCACAGGGCGCCGACATCGACTTCCCCGACTGTAAAGGCCACTCTCCACTGCTGCTAGCGACCAGCTGTGGTGCCTGGAGAACCGTTAACCTGCTGCTGTCACACGGTGCCGATCTGACGGCTAAAGACAAAGCTGGATGCAACTTCCTGCATCTCGCCATCTTGCAGCCTCGAGGTCTGAAGAACCTTCCGGCAGAAGTTCTGCAGCATGAGCATGTGCGAGAGCTGCTGAACGATGAAGACTCGGAGGGCTGCACTCCTCTTCACTACGCCTGCAGGCTGGGAATCCCTGACTCCGTGAAGAACATGCTCGGCCTGGAGGTCTCACTCGACCAGAAGTCCAAGCAGAAGAAATCGGCCTTACACTTTGCAGCTGAGTACGGGAGGATCAACACGTGTCACCGGCTCCTGGAGACCATGACAGACACACGTCTGCTGAACGAGGGTGATGAGAACGGCATGACACCGTTACACCTGGCTTCACGAGGCGGCCATGTTAAAGTGGTCGAGCTGCTCCTCAGAAAAGGTGCTCTGTTCCACAGTGATTATAAAGGCTGGTCCTGTTTACATCACGCTGCGGCCGAGGGATACACGCAGACCATGGACAGCTTACTCACATCTAACATCAAACTCCTGGACAAAACCGACGGAGACGGAAACACGGCACTGCACTTGGCTGCACGAGCGGGACACGTTGCTGCCGTTCGCCTCCTGCTGTCCAGAGGAGCTCAGATCCTGCTGAACCGCAGCGACGCCTCCTTCCTGCACGAGGCCATACACAACGGGAGGAAAGACGTCACGTGCGCCGTGATCGACAGCGACAGGTGTGAGGAAGCCATCACTACGTTTAAAGTGAACTCAGCCAAACGCTGCACTGTCCTGGACATGATCGAGTTTCTCCCTGAGTGTTTCAAGCATCTTCTAGACACCTGCATTAAAGAGTCAGAGGAAGACGTGAACTCCTGCAGCTACTATCTGGAATATAATTTCCAGTGGCTTCAACAGCCAAAACAGTACGCTAAGGACAGGGAGAAGACGGAGAAAGAAGACGAATACAAACCCCTGGCTGCACTCAACGCCATGGTGGAGTTTAATCGTGTCGAGTTACTGACGCATCCAGTGTGCAAGAAATATCTGGAAATGAAATGGCATGCGTACGGGGTGAAAGCTCACTTGCTCAATATGACCATGTACACGCTGGGCGTTTTCCCGCTGACCTACCTGATCGTCAATCTGCGGCCCAATCTGAGCGTGGAGAAAAACGTGACGATCAAGATGGTCACTAATACTCTGGACAAGcagtgttATTTCATCACAACCTGCATGTTTCTGGTCCTCGCGATGAATTTATACGCAGTCGGCAAAGAAGTAGTGCAGATGTTTCAGCAGAGGTTAAAGTACCTGCAGGACGTGTCGAACGTGCAGGACTGGGCCGCGACCATCTGCTCTCTGCTCTTCGTCCTTCCTCTCCTGCTGAACGTGAAGAAATCGTGGCACTGGCAGGCCGGAGCTCTGGCGTCTCTCGCCTCCTGGGTCAACCTGCTCCTCTACCTGCAGCGGTTTCAGAGGTTTGGGATATACGTGGTGATGTTTCGGGAGATCTGCAAGACGCTGCTGAGCATCATTCTGATATTCGTCTATCTGATCCTGGCGTTCGCTCTGGCCTTCTACGCGCTGATGATCGAACAGAAACATTTTGGCCGTCTGTTTCTCTCGATGATGCAAACGTTTGCCATGATGGCAGGAGAGATCAACTACCAGGACAACTTCCTGAAACCCTTCATGGCCAGACATCTTCCCTTCCCCATACTGACGTACTTCATCTTCGTTTGGTTCGTCCTGCTCGTGCCGATTCTGCTCATGAACCTGCTAATTGGTTTGGCTGTGGGAGACATCGCAGAGGTGAAGAACAACGCCTGTTTAAAACAGATAGGAATGCAGATTGAACTTCACACTAATCTGGAGGAGCGTCTGCCCTCCTGGTTCATGAAAAGAGTCGACCAAATCTCCGTGAAGGAATTTCCTAACAAGTGCTACAAAGGCAAGAGGTGGTTCTTCTGTGGAGGTGAAGTGAACAAAGTGAGAGCACGGCTGAGTTCCAGCACACGGCAGTGCACACAGCTGGAGAGAGAACTCACCAAACAGAAACACAGactgAAGGATCTCTCTGAGTCTATGGAGAAGCAGCACAACCTGCTGAAGCTGATCGTGCAGAAGATGGAGATCAGCTCCGAGGCGGAGGAAAACGACGGCCCTCGAGTCCTGCGCGACTTCACGCACAAACTCAGCGCCAAGAGCAAGTGGGGGCCGCTGCTGCGCGCCGTTACGGCCaagaggaagtgacatcacGACTCGGACGCCGGTGCTGAGGGCCAAGTTTCACGCGAGGTCTAAACCTCCATCTGGGCTGCTTAgtgatatttattttcaaaagtaTACGCCATCTAAGGACACTGAGAAGCGAAATGTCACTACAGCGCGGTGTTTATTTCTCTCGCCTTCTTTCTGCTGGTTAATAAAGCGATGACGGCGTGAAAACTCCGACTGTGTCAGAAACGGTATGAAACACGACGCACAgtgtaacaataataaaatacattaaactgTCATGTTTCACAGTTAATGAAAGACTGCTCAGGATCCGTGTGGTGTAAATTACTCGCTTGTTTTGACATATTTTGGCGAACAGAACTGACTGAAGTTTATTAGAAATGATCACAGACGGATGCAGACAGAAACACTAACTGCAGGAGCGCATGGAACTaggataaaaaacaaacaaacacaaacaaacacaaacaaacacctcTAATTCACAGCTATTTCTAGTTACATCTATTTTGGTAATTATTCATCAAACTGTCTTTTATTGTAAAGCAGATTTAACAAAGTGAAACTTTCTCATGACACAAAAAAAGACACCTGTTATGAAGTTTTAGTTATTAATTCAAAAAAAA

Function

NR:

description
PREDICTED: transient receptor potential cation channel subfamily A member 1-like

GO:

id name namespace
GO:0070542 response to fatty acid biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0009593 detection of chemical stimulus biological_process
GO:0050960 detection of temperature stimulus involved in thermoception biological_process
GO:0050974 detection of mechanical stimulus involved in sensory perception biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015276 ligand-gated ion channel activity molecular_function
GO:0008381 mechanosensitive ion channel activity molecular_function

KEGG:

id description
K04984 TRPA1, ANKTM1; transient receptor potential cation channel subfamily A member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941207.2 True 3978 mRNA 0.52 29 946792 965617

Neighbor

gene id symbol gene type direction distance location
tmem70 tmem70 coding upstream 45168 898058 ~ 901624 (+)
rdh10b rdh10b,LOC108280502,LOC108435720,LOC107550714,LOC107664055 coding upstream 73026 868721 ~ 873766 (+)
cbln2a cbln2a,cbln2,LOC108280218,LOC107586364,LOC107550708,LOC107686082,LOC107664049 coding upstream 218927 723451 ~ 727865 (+)
LOC113543348 gpr83 coding upstream 252454 683806 ~ 694338 (+)
mre11a mre11a coding upstream 269010 616718 ~ 677782 (+)
shhb LOC108280234 coding downstream 38292 1003909 ~ 1012192 (+)
cnpy1 cnpy1,LOC108435706 coding downstream 88251 1053868 ~ 1066467 (+)
cahz cahz coding downstream 385646 1351263 ~ 1357482 (+)
cdh6 LOC108280858,LOC108432255,LOC107678945,LOC107667294,LOC107567409 coding downstream 922133 1887750 ~ 1935629 (+)
zgc:163121 LOC108280641,LOC108432257 coding downstream 1017699 1983316 ~ 2018166 (+)
G312540 NA non-coding upstream 40346 906234 ~ 906446 (+)
G312534 NA non-coding upstream 60678 883404 ~ 886114 (+)
G312531 NA non-coding upstream 70912 875663 ~ 875880 (+)
G312509 rpl7,LOC107664057,LOC107584398 non-coding upstream 80071 862387 ~ 866721 (+)
G312517 NA non-coding upstream 124046 821262 ~ 822746 (+)
LOC117599981 NA non-coding downstream 11004 976621 ~ 980051 (+)
LOC117599954 NA non-coding downstream 124241 1089858 ~ 1104324 (+)
LOC117599969 NA non-coding downstream 397759 1363376 ~ 1370691 (+)
G312877 NA non-coding downstream 556684 1522301 ~ 1522511 (+)
LOC113543035 NA non-coding downstream 658946 1624563 ~ 1662193 (+)
jph1b jph1b,jph1,LOC108280498,LOC107550709,LOC108435725,LOC107584332,LOC107746914,LOC107686034,LOC107664083,LOC107732545 other upstream 99775 820530 ~ 847017 (+)
LOC113543349 iws1 other upstream 229501 704778 ~ 717291 (+)
atpv0e2 LOC108280382,LOC100691746,LOC107588449,LOC107551367,LOC107706116 other upstream 445403 413619 ~ 501389 (+)
snap91a snap91,LOC108280370 other upstream 627830 274822 ~ 318962 (+)
pnrc2 pnrc2 other upstream 753258 189539 ~ 193534 (+)
paxip1 paxip1,LOC106569237,LOC107550719 other downstream 163292 1128909 ~ 1147376 (+)
c21h5orf22 c20h5orf22,LOC107714825 other downstream 1000123 1965740 ~ 1977309 (+)
tgs1 tgs1 other downstream 1167533 2133150 ~ 2145237 (+)
G313112 zswim5 other downstream 1216362 2181979 ~ 2185677 (+)
LOC117599997 LOC108280771,LOC108435500 other downstream 1689583 2655200 ~ 2662399 (+)

Expression


Co-expression Network